Wall clock time and date at job start Mon Mar 30 2020 04:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00679 * 2 1 4 4 H 1.48504 * 109.47050 * 239.99920 * 3 2 1 5 5 H 1.48502 * 109.46981 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47139 * 119.99554 * 3 2 1 7 7 C 1.37884 * 119.99615 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00181 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99597 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46788 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47381 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.47497 * 179.97438 * 11 10 9 13 13 O 1.21275 * 119.99908 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00070 * 179.97438 * 12 11 10 15 15 C 1.48341 * 128.19376 * 0.02562 * 14 12 11 16 16 C 1.54461 * 104.30694 * 221.74426 * 15 14 12 17 17 H 1.09006 * 111.92831 * 96.31320 * 16 15 14 18 18 C 1.54146 * 108.79945 * 221.45777 * 16 15 14 19 19 C 1.54831 * 104.34548 * 135.95731 * 18 16 15 20 20 C 1.56524 * 103.25801 * 322.20795 * 19 18 16 21 21 C 1.54140 * 103.54576 * 37.28824 * 20 19 18 22 22 N 1.46905 * 111.89526 * 100.37495 * 21 20 19 23 23 C 1.48333 * 128.19703 * 180.02562 * 14 12 11 24 24 H 0.97003 * 119.99389 * 0.02562 * 1 2 3 25 25 H 1.08991 * 109.47581 * 59.99739 * 9 7 2 26 26 H 1.09000 * 109.47023 * 299.99054 * 9 7 2 27 27 H 1.08996 * 109.47649 * 59.99302 * 10 9 7 28 28 H 1.09005 * 109.46953 * 299.99579 * 10 9 7 29 29 H 1.09008 * 109.47230 * 59.99559 * 11 10 9 30 30 H 1.09005 * 109.46847 * 299.99783 * 11 10 9 31 31 H 1.08993 * 110.46760 * 340.45647 * 15 14 12 32 32 H 1.09008 * 110.46116 * 103.04021 * 15 14 12 33 33 H 1.09001 * 110.45922 * 254.67331 * 18 16 15 34 34 H 1.09004 * 110.45569 * 17.11500 * 18 16 15 35 35 H 1.08995 * 110.76359 * 80.08807 * 19 18 16 36 36 H 1.09002 * 110.75852 * 203.27640 * 19 18 16 37 37 H 1.09000 * 109.53647 * 279.44473 * 20 19 18 38 38 H 1.08996 * 112.13236 * 156.37713 * 20 19 18 39 39 H 1.00901 * 110.99869 * 61.40856 * 22 21 20 40 40 H 1.00896 * 110.99543 * 185.35978 * 22 21 20 41 41 H 1.09004 * 110.46376 * 19.54189 * 23 14 12 42 42 H 1.09005 * 110.46413 * 256.96393 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6961 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1943 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2449 -3.6622 0.0005 11 6 1.4799 -4.9872 0.0012 12 6 2.4591 -6.1327 0.0005 13 8 3.6514 -5.9112 -0.0008 14 7 2.0097 -7.4034 0.0015 15 6 0.6047 -7.8794 0.0026 16 6 0.6022 -9.0591 0.9997 17 1 0.2787 -8.7510 1.9940 18 6 -0.2611 -10.1972 0.4206 19 6 0.5689 -11.4783 0.6798 20 6 2.0411 -11.0087 0.4303 21 6 2.0644 -9.5762 0.9988 22 7 2.6661 -9.5280 2.3381 23 6 2.8029 -8.6568 0.0016 24 1 -0.4849 0.8401 -0.0004 25 1 0.6244 -2.5571 -0.8896 26 1 0.6239 -2.5567 0.8904 27 1 2.8717 -3.6045 0.8904 28 1 2.8715 -3.6045 -0.8895 29 1 0.8528 -5.0451 -0.8886 30 1 0.8535 -5.0446 0.8915 31 1 -0.0648 -7.0901 0.3442 32 1 0.3171 -8.2205 -0.9920 33 1 -1.2179 -10.2516 0.9398 34 1 -0.4164 -10.0513 -0.6484 35 1 0.4513 -11.8130 1.7104 36 1 0.2870 -12.2686 -0.0159 37 1 2.2435 -10.9971 -0.6406 38 1 2.7657 -11.6363 0.9490 39 1 3.6256 -9.8393 2.3148 40 1 2.5959 -8.6021 2.7329 41 1 3.8202 -8.4640 0.3425 42 1 2.8114 -9.1025 -0.9931 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598666918.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:01 Heat of formation + Delta-G solvation = -77.135118 kcal Electronic energy + Delta-G solvation = -20401.068480 eV Core-core repulsion = 17378.738633 eV Total energy + Delta-G solvation = -3022.329847 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.60130 -39.81524 -36.17949 -35.75676 -34.13630 -33.82202 -30.82704 -30.29343 -28.57980 -26.71860 -25.74346 -24.24390 -22.19802 -21.73388 -20.20912 -19.76867 -18.50371 -18.04469 -17.14736 -16.76534 -16.63816 -16.41814 -16.26544 -15.84929 -15.02631 -14.94920 -14.39758 -14.31865 -14.15886 -13.81097 -13.38671 -13.14287 -13.13186 -12.64619 -12.54029 -12.46853 -12.29769 -12.16532 -11.90942 -11.85494 -11.62460 -11.59425 -11.49069 -11.42165 -11.27996 -10.79472 -10.55952 -10.18870 -9.45955 -8.21828 -6.32118 1.38416 1.41422 1.49570 1.53990 1.87159 2.40409 3.10999 3.25890 3.39560 3.50295 3.76710 3.89185 4.09590 4.12963 4.17356 4.25999 4.31103 4.39968 4.46433 4.59312 4.67600 4.74291 4.84798 4.89996 4.91161 4.94756 5.04257 5.07774 5.12958 5.16632 5.24413 5.29983 5.32758 5.50550 5.55254 5.71407 5.83433 6.16651 6.24839 6.41493 6.47412 6.82543 7.08336 7.36456 8.89587 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.043209 B = 0.003302 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.853471 B = 8477.024552 C = 8827.063517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.004 3.996 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.551 4.551 8 H 0.051 0.949 9 C 0.028 3.972 10 C -0.081 4.081 11 C -0.123 4.123 12 C 0.533 3.467 13 O -0.588 6.588 14 N -0.627 5.627 15 C 0.095 3.905 16 C -0.093 4.093 17 H 0.089 0.911 18 C -0.111 4.111 19 C -0.113 4.113 20 C -0.107 4.107 21 C 0.108 3.892 22 N -0.827 5.827 23 C 0.069 3.931 24 H 0.265 0.735 25 H 0.001 0.999 26 H 0.001 0.999 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.346 0.654 40 H 0.339 0.661 41 H 0.057 0.943 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.623 -25.918 0.717 25.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.786 3.214 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.589 4.589 8 H 0.069 0.931 9 C -0.009 4.009 10 C -0.119 4.119 11 C -0.162 4.162 12 C 0.324 3.676 13 O -0.469 6.469 14 N -0.360 5.360 15 C -0.027 4.027 16 C -0.113 4.113 17 H 0.107 0.893 18 C -0.149 4.149 19 C -0.151 4.151 20 C -0.145 4.145 21 C 0.014 3.986 22 N -0.355 5.355 23 C -0.055 4.055 24 H 0.074 0.926 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.160 0.840 40 H 0.151 0.849 41 H 0.076 0.924 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.662 -26.107 0.922 26.176 hybrid contribution 1.232 1.960 -0.364 2.344 sum -0.430 -24.146 0.558 24.157 Atomic orbital electron populations 1.70057 1.07489 1.27918 1.51364 1.25908 0.95848 1.03061 0.94584 0.85550 0.78407 0.78344 0.79057 1.19448 1.20214 1.19430 1.21653 0.93322 0.92810 1.51067 0.93115 1.18994 0.94106 0.92245 0.95551 1.21166 0.97666 0.92914 1.00199 1.21629 0.97777 0.91490 1.05324 1.20781 0.89112 0.83267 0.74470 1.90657 1.19092 1.84701 1.52409 1.49233 1.09998 1.04109 1.72676 1.23069 0.81559 0.97267 1.00784 1.22797 0.94171 0.95106 0.99190 0.89279 1.22397 0.98125 0.92895 1.01477 1.22683 0.93255 0.97268 1.01888 1.22681 0.98425 0.92783 1.00607 1.22419 0.93791 0.95177 0.87222 1.58955 1.24158 1.31660 1.20758 1.23635 0.95876 0.84500 1.01513 0.92583 0.98035 0.98022 0.94174 0.94196 0.87702 0.87721 0.89273 0.88660 0.90355 0.89970 0.91774 0.90116 0.90304 0.90590 0.84008 0.84894 0.92431 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.65 13.29 21.45 0.28 -56.37 16 2 C 0.00 0.25 5.46 84.66 0.46 0.71 16 3 Si 0.96 45.50 29.54 68.60 2.03 47.52 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.55 -32.83 9.11 25.60 0.23 -32.60 16 8 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 9 C 0.03 1.52 4.97 29.85 0.15 1.66 16 10 C -0.08 -3.70 4.44 30.59 0.14 -3.56 16 11 C -0.12 -4.21 4.68 29.85 0.14 -4.07 16 12 C 0.53 18.20 7.93 87.66 0.69 18.89 16 13 O -0.59 -25.30 16.27 -3.01 -0.05 -25.35 16 14 N -0.63 -15.57 3.31 -806.71 -2.67 -18.24 16 15 C 0.10 1.62 6.46 86.52 0.56 2.18 16 16 C -0.09 -1.36 3.70 -9.19 -0.03 -1.39 16 17 H 0.09 1.46 8.08 -2.38 -0.02 1.44 16 18 C -0.11 -1.13 6.38 31.61 0.20 -0.93 16 19 C -0.11 -1.14 6.93 32.45 0.22 -0.91 16 20 C -0.11 -1.25 6.28 32.21 0.20 -1.05 16 21 C 0.11 1.70 1.22 5.12 0.01 1.70 16 22 N -0.83 -13.83 9.07 -145.34 -1.32 -15.15 16 23 C 0.07 1.44 6.34 86.51 0.55 1.99 16 24 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 25 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 26 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 27 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 28 H 0.04 1.90 8.10 -2.38 -0.02 1.88 16 29 H 0.10 3.23 8.14 -2.38 -0.02 3.21 16 30 H 0.10 3.22 7.98 -2.38 -0.02 3.20 16 31 H 0.09 1.48 7.32 -2.39 -0.02 1.47 16 32 H 0.10 1.30 7.20 -2.38 -0.02 1.28 16 33 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.08 0.69 7.18 -2.38 -0.02 0.67 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.08 0.80 7.20 -2.39 -0.02 0.79 16 38 H 0.08 0.88 8.07 -2.39 -0.02 0.86 16 39 H 0.35 5.17 9.07 -89.69 -0.81 4.36 16 40 H 0.34 6.50 9.03 -89.70 -0.81 5.69 16 41 H 0.06 1.43 7.83 -2.39 -0.02 1.41 16 42 H 0.09 1.55 7.22 -2.38 -0.02 1.54 16 Total: -1.00 -72.13 333.98 1.18 -70.95 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -0.61 Total: 14.01 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: 3.52 Total: -17.38 kcal Atomic # 7 Polarization: -86.06 SS G_CDS: -3.70 Total: -89.76 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.05 Total: -25.35 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -72.13 1.18 -70.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598666918.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.184 kcal (2) G-P(sol) polarization free energy of solvation -72.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds