Wall clock time and date at job start Mon Mar 30 2020 04:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00007 * 2 1 4 4 H 1.48502 * 109.47126 * 240.00325 * 3 2 1 5 5 H 1.48500 * 109.47067 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47264 * 120.00119 * 3 2 1 7 7 C 1.37877 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00153 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99854 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47309 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47418 * 180.02562 * 10 9 7 12 12 C 1.50690 * 109.47242 * 180.02562 * 11 10 9 13 13 O 1.21286 * 120.00260 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00164 * 180.02562 * 12 11 10 15 15 C 1.49221 * 126.05640 * 359.96684 * 14 12 11 16 16 C 1.50338 * 104.85964 * 187.10517 * 15 14 12 17 17 H 1.09004 * 110.04651 * 81.04647 * 16 15 14 18 18 C 1.51114 * 125.60491 * 215.58101 * 16 15 14 19 19 C 1.56402 * 101.54011 * 156.01282 * 18 16 15 20 20 C 1.55939 * 105.85127 * 335.06725 * 19 18 16 21 21 C 1.50293 * 104.16319 * 352.42490 * 20 19 18 22 22 N 1.46907 * 110.00131 * 279.50187 * 21 20 19 23 23 C 1.49700 * 126.06078 * 180.02562 * 14 12 11 24 24 H 0.96993 * 120.00020 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46951 * 60.00408 * 9 7 2 26 26 H 1.08998 * 109.47098 * 300.00436 * 9 7 2 27 27 H 1.09004 * 109.46736 * 60.00332 * 10 9 7 28 28 H 1.09005 * 109.47094 * 300.00476 * 10 9 7 29 29 H 1.09001 * 109.46878 * 59.99590 * 11 10 9 30 30 H 1.08998 * 109.46903 * 300.00439 * 11 10 9 31 31 H 1.09005 * 110.35775 * 68.26231 * 15 14 12 32 32 H 1.08998 * 110.45671 * 306.00300 * 15 14 12 33 33 H 1.08994 * 110.98210 * 37.96991 * 18 16 15 34 34 H 1.09002 * 111.06603 * 274.09161 * 18 16 15 35 35 H 1.09002 * 110.18631 * 215.94765 * 19 18 16 36 36 H 1.09003 * 110.18534 * 94.18414 * 19 18 16 37 37 H 1.09005 * 110.49462 * 111.10009 * 20 19 18 38 38 H 1.09008 * 110.49096 * 233.75388 * 20 19 18 39 39 H 1.00899 * 110.99715 * 298.98703 * 22 21 20 40 40 H 1.00896 * 110.99940 * 62.93843 * 22 21 20 41 41 H 1.08999 * 110.84400 * 86.90267 * 23 14 12 42 42 H 1.09000 * 110.84364 * 323.29001 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4804 -4.9871 -0.0025 12 6 2.4596 -6.1325 -0.0031 13 8 3.6521 -5.9109 -0.0035 14 7 2.0104 -7.4032 -0.0043 15 6 0.5803 -7.8292 -0.0043 16 6 0.6225 -9.3214 0.1739 17 1 0.7567 -9.5682 1.2271 18 6 -0.3260 -10.3106 -0.4627 19 6 0.5351 -11.6163 -0.4595 20 6 2.0218 -11.1460 -0.4438 21 6 1.9385 -9.6571 -0.6313 22 7 1.7502 -9.3395 -2.0532 23 6 2.8577 -8.6373 -0.0045 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8896 27 1 2.8726 -3.6047 0.8878 28 1 2.8714 -3.6039 -0.8923 29 1 0.8533 -5.0442 -0.8922 30 1 0.8540 -5.0455 0.8877 31 1 0.1086 -7.5738 -0.9532 32 1 0.0440 -7.3635 0.8224 33 1 -0.5774 -10.0110 -1.4801 34 1 -1.2257 -10.4344 0.1400 35 1 0.3350 -12.2011 -1.3573 36 1 0.3183 -12.2076 0.4302 37 1 2.4876 -11.3848 0.5123 38 1 2.5754 -11.6035 -1.2639 39 1 2.5265 -9.6736 -2.6042 40 1 0.8772 -9.7129 -2.3946 41 1 3.1219 -8.9266 1.0127 42 1 3.7509 -8.4945 -0.6127 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598666920.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:10 Heat of formation + Delta-G solvation = -32.211753 kcal Electronic energy + Delta-G solvation = -20455.764463 eV Core-core repulsion = 17435.382639 eV Total energy + Delta-G solvation = -3020.381824 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.21188 -38.67297 -35.06742 -34.08546 -32.47749 -31.89287 -30.05871 -29.16645 -27.42518 -26.45216 -24.06993 -22.89141 -20.37347 -20.15999 -19.70145 -18.73430 -16.94749 -16.56547 -16.22147 -15.99303 -15.45684 -14.77080 -14.56307 -14.45737 -14.25539 -14.01481 -13.30638 -12.76355 -12.60029 -12.37717 -12.22473 -11.97622 -11.75997 -11.70215 -11.64017 -11.45546 -11.22108 -10.94774 -10.71842 -10.53707 -10.48535 -10.32215 -9.56864 -9.53359 -9.17874 -8.98950 -8.88901 -8.42729 -8.25484 -5.91519 -3.92580 3.04667 3.11693 3.41016 3.43883 3.48150 3.49770 4.12618 4.32305 4.41493 4.54484 4.67606 4.73258 4.86058 5.02961 5.09794 5.26529 5.29675 5.34438 5.44312 5.46938 5.51521 5.55610 5.61560 5.68134 5.75111 5.85590 5.87894 5.88819 6.04158 6.27891 6.42604 6.84100 6.90755 7.04507 7.16104 7.25857 7.75228 7.79962 7.92559 8.09984 8.54223 8.60060 9.14384 9.70868 11.20057 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.046810 B = 0.003267 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.018998 B = 8569.070410 C = 8910.470268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.095 4.095 11 C -0.131 4.131 12 C 0.532 3.468 13 O -0.544 6.544 14 N -0.617 5.617 15 C 0.132 3.868 16 C -0.121 4.121 17 H 0.084 0.916 18 C -0.107 4.107 19 C -0.124 4.124 20 C -0.133 4.133 21 C 0.079 3.921 22 N -0.829 5.829 23 C 0.141 3.859 24 H 0.260 0.740 25 H 0.015 0.985 26 H 0.015 0.985 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.342 0.658 40 H 0.341 0.659 41 H 0.067 0.933 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.783 -26.867 -1.082 26.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.133 4.133 11 C -0.171 4.171 12 C 0.323 3.677 13 O -0.420 6.420 14 N -0.353 5.353 15 C 0.009 3.991 16 C -0.140 4.140 17 H 0.102 0.898 18 C -0.145 4.145 19 C -0.161 4.161 20 C -0.173 4.173 21 C -0.014 4.014 22 N -0.362 5.362 23 C 0.018 3.982 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.033 0.967 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.086 0.914 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.246 -25.733 -0.854 25.778 hybrid contribution 0.327 -0.246 -0.154 0.437 sum -0.919 -25.980 -1.007 26.015 Atomic orbital electron populations 1.69954 1.06020 1.26567 1.51295 1.25017 0.94852 0.99191 0.95457 0.86656 0.79567 0.83108 0.78668 1.20239 1.21364 1.20258 1.21258 0.93168 0.91065 1.50044 0.92640 1.19122 0.93971 0.91428 0.97068 1.21448 0.98618 0.91611 1.01596 1.21790 0.98050 0.93808 1.03444 1.20889 0.89999 0.82227 0.74623 1.90667 1.17388 1.83852 1.50125 1.49569 1.06389 1.04685 1.74660 1.21059 0.83038 0.92848 1.02120 1.22316 0.96572 0.94880 1.00273 0.89789 1.21850 0.97606 0.93872 1.01219 1.22977 0.93567 0.97320 1.02267 1.22188 0.97200 0.95005 1.02876 1.21732 0.97276 0.92433 0.89999 1.58852 1.07608 1.68209 1.01497 1.21246 0.93843 0.83761 0.99324 0.93067 0.96621 0.96658 0.92813 0.92755 0.89507 0.89745 0.90646 0.91237 0.90674 0.90745 0.91558 0.91176 0.90753 0.91371 0.84471 0.84408 0.91437 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.29 55.43 0.74 -26.92 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.49 29.54 -169.99 -5.02 17.47 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.52 -15.41 9.11 -34.44 -0.31 -15.72 16 8 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.09 -2.18 4.44 -26.73 -0.12 -2.30 16 11 C -0.13 -2.41 4.93 -27.89 -0.14 -2.54 16 12 C 0.53 9.69 7.88 -10.99 -0.09 9.60 16 13 O -0.54 -11.97 16.31 5.55 0.09 -11.88 16 14 N -0.62 -8.62 3.31 -171.55 -0.57 -9.19 16 15 C 0.13 1.41 5.96 -3.86 -0.02 1.38 16 16 C -0.12 -0.96 2.64 -90.22 -0.24 -1.20 16 17 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 18 C -0.11 -0.63 6.32 -25.85 -0.16 -0.79 16 19 C -0.12 -0.62 6.78 -23.33 -0.16 -0.78 16 20 C -0.13 -0.80 6.31 -26.51 -0.17 -0.96 16 21 C 0.08 0.65 1.32 -131.31 -0.17 0.48 16 22 N -0.83 -6.96 8.21 0.98 0.01 -6.96 16 23 C 0.14 1.64 6.43 -3.30 -0.02 1.62 16 24 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 1.28 8.10 -51.93 -0.42 0.86 16 28 H 0.05 1.30 8.10 -51.93 -0.42 0.88 16 29 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 31 H 0.08 0.82 8.07 -51.93 -0.42 0.41 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.43 6.43 -51.93 -0.33 0.09 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.38 8.06 -51.92 -0.42 -0.04 16 39 H 0.34 2.58 8.99 -39.29 -0.35 2.23 16 40 H 0.34 2.36 6.43 -39.29 -0.25 2.11 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 LS Contribution 332.43 15.07 5.01 5.01 Total: -1.00 -34.30 332.43 -8.81 -43.11 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -7.23 Total: -1.41 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -1.84 Total: -9.23 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: 0.18 Total: -43.07 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.30 -8.81 -43.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598666920.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.897 kcal (2) G-P(sol) polarization free energy of solvation -34.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds