Wall clock time and date at job start Mon Mar 30 2020 04:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00007 * 2 1 4 4 H 1.48502 * 109.47126 * 240.00325 * 3 2 1 5 5 H 1.48500 * 109.47067 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47264 * 120.00119 * 3 2 1 7 7 C 1.37877 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00153 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99854 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47309 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47418 * 180.02562 * 10 9 7 12 12 C 1.50690 * 109.47242 * 180.02562 * 11 10 9 13 13 O 1.21286 * 120.00260 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00164 * 180.02562 * 12 11 10 15 15 C 1.49221 * 126.05640 * 359.96684 * 14 12 11 16 16 C 1.50338 * 104.85964 * 187.10517 * 15 14 12 17 17 H 1.09004 * 110.04651 * 81.04647 * 16 15 14 18 18 C 1.51114 * 125.60491 * 215.58101 * 16 15 14 19 19 C 1.56402 * 101.54011 * 156.01282 * 18 16 15 20 20 C 1.55939 * 105.85127 * 335.06725 * 19 18 16 21 21 C 1.50293 * 104.16319 * 352.42490 * 20 19 18 22 22 N 1.46907 * 110.00131 * 279.50187 * 21 20 19 23 23 C 1.49700 * 126.06078 * 180.02562 * 14 12 11 24 24 H 0.96993 * 120.00020 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46951 * 60.00408 * 9 7 2 26 26 H 1.08998 * 109.47098 * 300.00436 * 9 7 2 27 27 H 1.09004 * 109.46736 * 60.00332 * 10 9 7 28 28 H 1.09005 * 109.47094 * 300.00476 * 10 9 7 29 29 H 1.09001 * 109.46878 * 59.99590 * 11 10 9 30 30 H 1.08998 * 109.46903 * 300.00439 * 11 10 9 31 31 H 1.09005 * 110.35775 * 68.26231 * 15 14 12 32 32 H 1.08998 * 110.45671 * 306.00300 * 15 14 12 33 33 H 1.08994 * 110.98210 * 37.96991 * 18 16 15 34 34 H 1.09002 * 111.06603 * 274.09161 * 18 16 15 35 35 H 1.09002 * 110.18631 * 215.94765 * 19 18 16 36 36 H 1.09003 * 110.18534 * 94.18414 * 19 18 16 37 37 H 1.09005 * 110.49462 * 111.10009 * 20 19 18 38 38 H 1.09008 * 110.49096 * 233.75388 * 20 19 18 39 39 H 1.00899 * 110.99715 * 298.98703 * 22 21 20 40 40 H 1.00896 * 110.99940 * 62.93843 * 22 21 20 41 41 H 1.08999 * 110.84400 * 86.90267 * 23 14 12 42 42 H 1.09000 * 110.84364 * 323.29001 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4804 -4.9871 -0.0025 12 6 2.4596 -6.1325 -0.0031 13 8 3.6521 -5.9109 -0.0035 14 7 2.0104 -7.4032 -0.0043 15 6 0.5803 -7.8292 -0.0043 16 6 0.6225 -9.3214 0.1739 17 1 0.7567 -9.5682 1.2271 18 6 -0.3260 -10.3106 -0.4627 19 6 0.5351 -11.6163 -0.4595 20 6 2.0218 -11.1460 -0.4438 21 6 1.9385 -9.6571 -0.6313 22 7 1.7502 -9.3395 -2.0532 23 6 2.8577 -8.6373 -0.0045 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8896 27 1 2.8726 -3.6047 0.8878 28 1 2.8714 -3.6039 -0.8923 29 1 0.8533 -5.0442 -0.8922 30 1 0.8540 -5.0455 0.8877 31 1 0.1086 -7.5738 -0.9532 32 1 0.0440 -7.3635 0.8224 33 1 -0.5774 -10.0110 -1.4801 34 1 -1.2257 -10.4344 0.1400 35 1 0.3350 -12.2011 -1.3573 36 1 0.3183 -12.2076 0.4302 37 1 2.4876 -11.3848 0.5123 38 1 2.5754 -11.6035 -1.2639 39 1 2.5265 -9.6736 -2.6042 40 1 0.8772 -9.7129 -2.3946 41 1 3.1219 -8.9266 1.0127 42 1 3.7509 -8.4945 -0.6127 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598666920.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:10 Heat of formation + Delta-G solvation = -55.496251 kcal Electronic energy + Delta-G solvation = -20456.774155 eV Core-core repulsion = 17435.382639 eV Total energy + Delta-G solvation = -3021.391516 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.00238 -40.00653 -36.19337 -35.98079 -34.03478 -33.05535 -30.85730 -30.42401 -28.91936 -27.25610 -25.75167 -24.06185 -22.06027 -20.92184 -20.48807 -19.99416 -18.47969 -17.75999 -17.57610 -17.09731 -16.65601 -16.47410 -15.70640 -15.56263 -15.21810 -14.93063 -14.54430 -14.36112 -13.80374 -13.64189 -13.50539 -13.36271 -13.05541 -12.79277 -12.60921 -12.49328 -12.40454 -12.25822 -12.18558 -12.02646 -11.57073 -11.45778 -11.42054 -11.27159 -11.02667 -10.71338 -10.54073 -9.69704 -9.47304 -8.19815 -6.30180 1.39363 1.42893 1.50946 1.68231 1.93141 2.42068 2.82805 3.12707 3.48217 3.68964 3.84240 3.88647 4.00337 4.18954 4.20981 4.26445 4.36059 4.41390 4.53341 4.65177 4.67734 4.73453 4.80888 4.83200 4.90437 4.95706 5.06078 5.09083 5.11316 5.17701 5.17781 5.29772 5.36906 5.46654 5.53092 5.74362 5.85722 6.27191 6.29851 6.51003 6.62335 6.84408 7.21126 7.38229 8.91734 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.046810 B = 0.003267 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.018998 B = 8569.070410 C = 8910.470268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.051 0.949 9 C 0.028 3.972 10 C -0.080 4.080 11 C -0.121 4.121 12 C 0.528 3.472 13 O -0.593 6.593 14 N -0.611 5.611 15 C 0.124 3.876 16 C -0.115 4.115 17 H 0.089 0.911 18 C -0.103 4.103 19 C -0.116 4.116 20 C -0.127 4.127 21 C 0.086 3.914 22 N -0.843 5.843 23 C 0.133 3.867 24 H 0.265 0.735 25 H 0.000 1.000 26 H 0.001 0.999 27 H 0.040 0.960 28 H 0.038 0.962 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.346 0.654 40 H 0.351 0.649 41 H 0.077 0.923 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.535 -28.352 -1.047 28.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.588 4.588 8 H 0.069 0.931 9 C -0.009 4.009 10 C -0.119 4.119 11 C -0.161 4.161 12 C 0.319 3.681 13 O -0.474 6.474 14 N -0.344 5.344 15 C 0.003 3.997 16 C -0.135 4.135 17 H 0.107 0.893 18 C -0.141 4.141 19 C -0.154 4.154 20 C -0.167 4.167 21 C -0.007 4.007 22 N -0.378 5.378 23 C 0.011 3.989 24 H 0.074 0.926 25 H 0.018 0.982 26 H 0.020 0.980 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.160 0.840 40 H 0.167 0.833 41 H 0.095 0.905 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.039 -27.279 -0.822 27.367 hybrid contribution 0.522 0.175 -0.168 0.576 sum -1.517 -27.103 -0.990 27.164 Atomic orbital electron populations 1.70060 1.07512 1.27906 1.51433 1.25920 0.95858 1.03089 0.94584 0.85534 0.78389 0.78267 0.79067 1.19443 1.20177 1.19402 1.21661 0.93335 0.92803 1.50998 0.93096 1.18995 0.94107 0.92291 0.95471 1.21159 0.97637 0.92948 1.00126 1.21594 0.97771 0.91718 1.04972 1.20694 0.89053 0.83588 0.74813 1.90640 1.19047 1.84860 1.52901 1.49573 1.08569 1.04081 1.72180 1.21303 0.80854 0.95065 1.02493 1.22320 0.97170 0.93182 1.00795 0.89279 1.21875 0.97614 0.93288 1.01297 1.22944 0.92220 0.96921 1.03318 1.22168 0.98339 0.92835 1.03387 1.21612 0.96150 0.93191 0.89788 1.58807 1.08402 1.68893 1.01689 1.21439 0.93664 0.83815 1.00007 0.92593 0.98168 0.98033 0.94130 0.94339 0.88197 0.87923 0.90626 0.90455 0.90425 0.89661 0.90432 0.90295 0.90419 0.90663 0.84039 0.83268 0.90507 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.52 13.29 21.45 0.28 -57.23 16 2 C 0.00 0.21 5.46 84.65 0.46 0.67 16 3 Si 0.96 46.15 29.54 68.60 2.03 48.18 16 4 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 7 C -0.55 -33.45 9.11 25.60 0.23 -33.21 16 8 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 9 C 0.03 1.58 4.97 29.85 0.15 1.73 16 10 C -0.08 -3.83 4.44 30.59 0.14 -3.69 16 11 C -0.12 -4.47 4.93 29.84 0.15 -4.32 16 12 C 0.53 19.52 7.88 87.65 0.69 20.21 16 13 O -0.59 -27.06 16.31 -3.05 -0.05 -27.11 16 14 N -0.61 -16.81 3.31 -815.06 -2.70 -19.51 16 15 C 0.12 2.45 5.96 84.99 0.51 2.96 16 16 C -0.12 -1.56 2.64 -10.53 -0.03 -1.59 16 17 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 18 C -0.10 -0.87 6.32 31.16 0.20 -0.67 16 19 C -0.12 -0.77 6.78 32.80 0.22 -0.55 16 20 C -0.13 -1.19 6.31 30.74 0.19 -0.99 16 21 C 0.09 1.27 1.32 3.71 0.00 1.27 16 22 N -0.84 -12.90 8.21 -150.81 -1.24 -14.14 16 23 C 0.13 3.03 6.43 85.08 0.55 3.58 16 24 H 0.27 15.35 8.31 -92.71 -0.77 14.57 16 25 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 26 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 27 H 0.04 2.00 8.10 -2.39 -0.02 1.98 16 28 H 0.04 1.91 8.10 -2.38 -0.02 1.89 16 29 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 30 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 31 H 0.08 1.53 8.07 -2.38 -0.02 1.51 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.08 0.65 6.43 -2.39 -0.02 0.63 16 34 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 38 H 0.07 0.63 8.06 -2.38 -0.02 0.61 16 39 H 0.35 4.81 8.99 -89.70 -0.81 4.00 16 40 H 0.35 4.09 6.43 -89.70 -0.58 3.52 16 41 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.06 1.57 8.09 -2.39 -0.02 1.55 16 Total: -1.00 -75.09 332.43 1.41 -73.69 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -0.38 Total: 10.73 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: 3.46 Total: -14.61 kcal Atomic # 7 Polarization: -87.22 SS G_CDS: -3.65 Total: -90.88 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.05 Total: -27.11 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -75.09 1.41 -73.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598666920.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.190 kcal (2) G-P(sol) polarization free energy of solvation -75.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds