Wall clock time and date at job start Mon Mar 30 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.44946 * 2 1 4 4 C 1.48530 * 110.99996 * 184.39706 * 3 2 1 5 5 C 1.54935 * 103.22804 * 159.72219 * 4 3 2 6 6 C 1.54593 * 102.91941 * 322.57973 * 5 4 3 7 7 C 1.47903 * 111.00044 * 301.79178 * 3 2 1 8 8 C 1.53036 * 109.46161 * 240.02911 * 2 1 3 9 9 C 1.53192 * 109.31491 * 301.34835 * 8 2 1 10 10 N 1.46927 * 108.89386 * 305.28971 * 9 8 2 11 11 C 1.34770 * 120.63260 * 233.67615 * 10 9 8 12 12 O 1.21687 * 120.00047 * 5.12351 * 11 10 9 13 13 C 1.46369 * 120.00032 * 185.13058 * 11 10 9 14 14 H 1.07999 * 120.00065 * 353.90616 * 13 11 10 15 15 C 1.40054 * 120.00405 * 173.91362 * 13 11 10 16 16 N 1.30679 * 119.99405 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 120.00256 * 179.97438 * 15 13 11 18 18 H 1.48490 * 109.47005 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.46855 * 119.99844 * 17 15 13 20 20 H 1.48500 * 109.46723 * 239.99557 * 17 15 13 21 21 C 1.47209 * 118.54968 * 53.53821 * 10 9 8 22 22 C 1.53047 * 109.45690 * 119.96280 * 2 1 3 23 23 H 1.08999 * 109.47626 * 183.69983 * 1 2 3 24 24 H 1.09002 * 109.47147 * 303.69801 * 1 2 3 25 25 H 1.09003 * 109.47285 * 63.69680 * 1 2 3 26 26 H 1.09005 * 110.66419 * 278.15494 * 4 3 2 27 27 H 1.08998 * 110.67193 * 41.28071 * 4 3 2 28 28 H 1.09005 * 110.72389 * 204.22602 * 5 4 3 29 29 H 1.08993 * 110.73072 * 80.94358 * 5 4 3 30 30 H 1.08995 * 110.31680 * 263.04238 * 6 5 4 31 31 H 1.09003 * 110.39349 * 140.91668 * 6 5 4 32 32 H 1.09001 * 109.91213 * 333.50908 * 7 3 2 33 33 H 1.08998 * 109.92037 * 94.60263 * 7 3 2 34 34 H 1.08996 * 109.50304 * 181.39079 * 8 2 1 35 35 H 1.09007 * 109.49323 * 61.29645 * 8 2 1 36 36 H 1.09008 * 109.58595 * 65.15226 * 9 8 2 37 37 H 1.08993 * 109.58902 * 185.43036 * 9 8 2 38 38 H 0.97000 * 119.99739 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.52742 * 186.67601 * 21 10 9 40 40 H 1.09001 * 109.67653 * 66.37126 * 21 10 9 41 41 H 1.09000 * 109.49245 * 178.60434 * 22 2 1 42 42 H 1.08991 * 109.49802 * 298.70376 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0191 1.3851 0.0000 4 6 3.5000 1.4267 -0.1063 5 6 3.7788 2.8637 -0.6140 6 6 2.6122 3.1156 -1.5965 7 6 1.5097 2.1272 -1.1736 8 6 2.0399 -0.7208 -1.2500 9 6 1.4995 -2.1542 -1.2641 10 7 1.8626 -2.8120 -0.0015 11 6 2.5162 -3.9906 -0.0044 12 8 2.8937 -4.4745 -1.0552 13 6 2.7720 -4.6887 1.2564 14 1 2.5259 -4.2153 2.1954 15 6 3.3361 -5.9705 1.2453 16 7 3.6337 -6.5435 0.1091 17 14 3.6632 -6.8611 2.8544 18 1 3.2408 -6.0026 3.9900 19 1 2.8955 -8.1320 2.8817 20 1 5.1139 -7.1566 2.9706 21 6 1.4995 -2.1541 1.2643 22 6 2.0398 -0.7207 1.2502 23 1 -0.3634 -1.0255 0.0663 24 1 -0.3633 0.5702 0.8550 25 1 -0.3634 0.4554 -0.9213 26 1 3.9603 1.2671 0.8688 27 1 3.8550 0.6888 -0.8257 28 1 4.7366 2.9106 -1.1324 29 1 3.7499 3.5764 0.2101 30 1 2.9289 2.9140 -2.6197 31 1 2.2550 4.1416 -1.5069 32 1 1.2998 1.4342 -1.9884 33 1 0.6033 2.6698 -0.9051 34 1 3.1295 -0.7429 -1.2383 35 1 1.6957 -0.1935 -2.1398 36 1 0.4145 -2.1347 -1.3673 37 1 1.9362 -2.7011 -2.0997 38 1 4.0240 -7.4314 0.1014 39 1 1.9381 -2.7017 2.0985 40 1 0.4148 -2.1347 1.3700 41 1 3.1295 -0.7428 1.2384 42 1 1.6957 -0.1934 2.1398 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601740666.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:10 Heat of formation + Delta-G solvation = -25.575963 kcal Electronic energy + Delta-G solvation = -21665.154315 eV Core-core repulsion = 18645.060240 eV Total energy + Delta-G solvation = -3020.094075 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.23640 -37.76992 -35.74159 -32.89331 -32.42532 -30.66596 -29.29317 -29.17906 -27.06880 -26.17156 -23.45740 -22.75792 -21.55509 -20.59709 -19.56010 -17.73055 -16.76692 -16.09300 -15.79151 -15.37717 -14.68382 -14.21763 -14.19198 -14.00257 -13.68320 -13.62809 -13.10574 -12.42169 -12.39370 -12.14772 -11.85095 -11.64054 -11.49410 -11.35230 -11.26815 -11.05353 -11.00441 -10.95647 -10.82610 -10.68600 -10.54118 -10.33796 -10.18122 -10.04141 -9.70368 -8.86317 -8.15670 -7.56424 -7.18460 -6.19870 -4.64056 3.12439 3.20848 3.24922 4.06426 4.08938 4.54211 4.59986 4.66934 4.67967 4.91468 5.06791 5.11828 5.34059 5.39588 5.48913 5.61289 5.70286 5.72931 5.75108 5.77229 5.80433 5.87089 5.91629 6.00707 6.01795 6.09275 6.13331 6.17193 6.26624 6.30960 6.42991 6.53539 6.55173 6.63792 6.77991 7.08430 7.26257 7.46201 7.64393 8.15306 8.37375 9.02679 9.45201 10.58058 10.76786 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.032400 B = 0.004924 C = 0.004856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.986142 B = 5685.032350 C = 5764.877319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.105 3.895 3 N -0.507 5.507 4 C 0.027 3.973 5 C -0.123 4.123 6 C -0.131 4.131 7 C 0.030 3.970 8 C -0.159 4.159 9 C 0.125 3.875 10 N -0.641 5.641 11 C 0.560 3.440 12 O -0.580 6.580 13 C -0.544 4.544 14 H 0.073 0.927 15 C 0.088 3.912 16 N -0.769 5.769 17 Si 0.906 3.094 18 H -0.263 1.263 19 H -0.276 1.276 20 H -0.276 1.276 21 C 0.122 3.878 22 C -0.117 4.117 23 H 0.069 0.931 24 H 0.059 0.941 25 H 0.048 0.952 26 H 0.080 0.920 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.043 0.957 37 H 0.081 0.919 38 H 0.267 0.733 39 H 0.092 0.908 40 H 0.045 0.955 41 H 0.062 0.938 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.561 16.097 0.713 16.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.015 3.985 3 N -0.230 5.230 4 C -0.101 4.101 5 C -0.161 4.161 6 C -0.169 4.169 7 C -0.098 4.098 8 C -0.199 4.199 9 C 0.000 4.000 10 N -0.379 5.379 11 C 0.366 3.634 12 O -0.462 6.462 13 C -0.581 4.581 14 H 0.091 0.909 15 C -0.132 4.132 16 N -0.398 5.398 17 Si 0.730 3.270 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.202 1.202 21 C -0.002 4.002 22 C -0.156 4.156 23 H 0.088 0.912 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.098 0.902 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.111 0.889 40 H 0.063 0.937 41 H 0.081 0.919 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.467 15.884 0.522 16.266 hybrid contribution 0.408 -0.710 0.011 0.819 sum -3.059 15.174 0.533 15.488 Atomic orbital electron populations 1.21943 0.93925 1.02441 1.01407 1.21132 0.95236 0.86767 0.95344 1.65064 1.06263 1.12857 1.38826 1.23325 0.89218 0.96272 1.01264 1.22464 0.97806 0.97022 0.98795 1.22384 0.95863 0.99543 0.99081 1.22888 0.98129 0.96033 0.92721 1.22603 1.01596 0.97854 0.97840 1.21052 0.97579 0.91024 0.90357 1.48236 1.62849 1.23464 1.03380 1.18247 0.76619 0.77919 0.90628 1.90584 1.55135 1.66336 1.34190 1.21022 1.43856 1.01172 0.92018 0.90860 1.25734 0.93282 0.97283 0.96898 1.70031 1.30653 1.13032 1.26065 0.86347 0.78449 0.79590 0.82591 1.18703 1.20167 1.20179 1.21503 0.98157 0.91354 0.89228 1.21955 1.01014 0.96173 0.96420 0.91232 0.92224 0.93250 0.90176 0.92720 0.91427 0.91069 0.91834 0.91428 0.93133 0.90860 0.91454 0.92050 0.93896 0.90104 0.92187 0.88945 0.93653 0.91898 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 7.49 37.16 0.28 -1.58 16 2 C 0.10 1.52 0.43 -131.56 -0.06 1.47 16 3 N -0.51 -6.69 5.09 -214.81 -1.09 -7.78 16 4 C 0.03 0.34 5.40 -1.90 -0.01 0.33 16 5 C -0.12 -1.27 7.06 -24.87 -0.18 -1.45 16 6 C -0.13 -1.29 6.93 -25.38 -0.18 -1.47 16 7 C 0.03 0.35 5.21 -2.75 -0.01 0.33 16 8 C -0.16 -2.59 4.21 -26.61 -0.11 -2.71 16 9 C 0.12 2.47 5.97 -3.71 -0.02 2.45 16 10 N -0.64 -14.56 2.98 -174.20 -0.52 -15.08 16 11 C 0.56 15.98 7.62 -12.99 -0.10 15.88 16 12 O -0.58 -18.86 14.46 5.20 0.08 -18.79 16 13 C -0.54 -15.23 8.87 -35.63 -0.32 -15.54 16 14 H 0.07 1.87 5.70 -52.49 -0.30 1.57 16 15 C 0.09 2.43 5.50 -17.36 -0.10 2.34 16 16 N -0.77 -23.06 11.85 55.55 0.66 -22.41 16 17 Si 0.91 20.04 29.56 -169.99 -5.02 15.01 16 18 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 19 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 21 C 0.12 2.28 5.85 -3.56 -0.02 2.26 16 22 C -0.12 -1.86 4.83 -26.61 -0.13 -1.98 16 23 H 0.07 0.99 4.99 -51.93 -0.26 0.73 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.60 7.07 -51.93 -0.37 0.24 16 26 H 0.08 1.04 7.72 -51.93 -0.40 0.64 16 27 H 0.05 0.78 5.53 -51.93 -0.29 0.49 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.60 5.28 -51.93 -0.27 0.33 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.07 1.21 6.06 -51.93 -0.31 0.89 16 35 H 0.06 0.90 6.03 -51.92 -0.31 0.59 16 36 H 0.04 0.78 6.78 -51.92 -0.35 0.43 16 37 H 0.08 1.83 6.99 -51.93 -0.36 1.46 16 38 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16 39 H 0.09 1.82 5.40 -51.93 -0.28 1.54 16 40 H 0.05 0.78 6.62 -51.93 -0.34 0.43 16 41 H 0.06 1.08 7.13 -51.93 -0.37 0.71 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 307.21 15.07 4.63 4.63 Total: -1.00 -32.83 307.21 -8.54 -41.38 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.32 Total: 2.70 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -0.95 Total: 0.34 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: -0.96 Total: -45.27 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: 0.08 Total: -18.79 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.83 -8.54 -41.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601740666.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.800 kcal (2) G-P(sol) polarization free energy of solvation -32.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds