Wall clock time and date at job start Mon Mar 30 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.44946 * 2 1 4 4 C 1.48530 * 110.99996 * 184.39706 * 3 2 1 5 5 C 1.54935 * 103.22804 * 159.72219 * 4 3 2 6 6 C 1.54593 * 102.91941 * 322.57973 * 5 4 3 7 7 C 1.47903 * 111.00044 * 301.79178 * 3 2 1 8 8 C 1.53036 * 109.46161 * 240.02911 * 2 1 3 9 9 C 1.53192 * 109.31491 * 301.34835 * 8 2 1 10 10 N 1.46927 * 108.89386 * 305.28971 * 9 8 2 11 11 C 1.34770 * 120.63260 * 233.67615 * 10 9 8 12 12 O 1.21687 * 120.00047 * 5.12351 * 11 10 9 13 13 C 1.46369 * 120.00032 * 185.13058 * 11 10 9 14 14 H 1.07999 * 120.00065 * 353.90616 * 13 11 10 15 15 C 1.40054 * 120.00405 * 173.91362 * 13 11 10 16 16 N 1.30679 * 119.99405 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 120.00256 * 179.97438 * 15 13 11 18 18 H 1.48490 * 109.47005 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.46855 * 119.99844 * 17 15 13 20 20 H 1.48500 * 109.46723 * 239.99557 * 17 15 13 21 21 C 1.47209 * 118.54968 * 53.53821 * 10 9 8 22 22 C 1.53047 * 109.45690 * 119.96280 * 2 1 3 23 23 H 1.08999 * 109.47626 * 183.69983 * 1 2 3 24 24 H 1.09002 * 109.47147 * 303.69801 * 1 2 3 25 25 H 1.09003 * 109.47285 * 63.69680 * 1 2 3 26 26 H 1.09005 * 110.66419 * 278.15494 * 4 3 2 27 27 H 1.08998 * 110.67193 * 41.28071 * 4 3 2 28 28 H 1.09005 * 110.72389 * 204.22602 * 5 4 3 29 29 H 1.08993 * 110.73072 * 80.94358 * 5 4 3 30 30 H 1.08995 * 110.31680 * 263.04238 * 6 5 4 31 31 H 1.09003 * 110.39349 * 140.91668 * 6 5 4 32 32 H 1.09001 * 109.91213 * 333.50908 * 7 3 2 33 33 H 1.08998 * 109.92037 * 94.60263 * 7 3 2 34 34 H 1.08996 * 109.50304 * 181.39079 * 8 2 1 35 35 H 1.09007 * 109.49323 * 61.29645 * 8 2 1 36 36 H 1.09008 * 109.58595 * 65.15226 * 9 8 2 37 37 H 1.08993 * 109.58902 * 185.43036 * 9 8 2 38 38 H 0.97000 * 119.99739 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.52742 * 186.67601 * 21 10 9 40 40 H 1.09001 * 109.67653 * 66.37126 * 21 10 9 41 41 H 1.09000 * 109.49245 * 178.60434 * 22 2 1 42 42 H 1.08991 * 109.49802 * 298.70376 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0191 1.3851 0.0000 4 6 3.5000 1.4267 -0.1063 5 6 3.7788 2.8637 -0.6140 6 6 2.6122 3.1156 -1.5965 7 6 1.5097 2.1272 -1.1736 8 6 2.0399 -0.7208 -1.2500 9 6 1.4995 -2.1542 -1.2641 10 7 1.8626 -2.8120 -0.0015 11 6 2.5162 -3.9906 -0.0044 12 8 2.8937 -4.4745 -1.0552 13 6 2.7720 -4.6887 1.2564 14 1 2.5259 -4.2153 2.1954 15 6 3.3361 -5.9705 1.2453 16 7 3.6337 -6.5435 0.1091 17 14 3.6632 -6.8611 2.8544 18 1 3.2408 -6.0026 3.9900 19 1 2.8955 -8.1320 2.8817 20 1 5.1139 -7.1566 2.9706 21 6 1.4995 -2.1541 1.2643 22 6 2.0398 -0.7207 1.2502 23 1 -0.3634 -1.0255 0.0663 24 1 -0.3633 0.5702 0.8550 25 1 -0.3634 0.4554 -0.9213 26 1 3.9603 1.2671 0.8688 27 1 3.8550 0.6888 -0.8257 28 1 4.7366 2.9106 -1.1324 29 1 3.7499 3.5764 0.2101 30 1 2.9289 2.9140 -2.6197 31 1 2.2550 4.1416 -1.5069 32 1 1.2998 1.4342 -1.9884 33 1 0.6033 2.6698 -0.9051 34 1 3.1295 -0.7429 -1.2383 35 1 1.6957 -0.1935 -2.1398 36 1 0.4145 -2.1347 -1.3673 37 1 1.9362 -2.7011 -2.0997 38 1 4.0240 -7.4314 0.1014 39 1 1.9381 -2.7017 2.0985 40 1 0.4148 -2.1347 1.3700 41 1 3.1295 -0.7428 1.2384 42 1 1.6957 -0.1934 2.1398 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601740666.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:10 Heat of formation + Delta-G solvation = -48.605811 kcal Electronic energy + Delta-G solvation = -21666.152964 eV Core-core repulsion = 18645.060240 eV Total energy + Delta-G solvation = -3021.092724 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.49095 -39.44147 -37.36813 -34.73672 -34.24949 -32.18546 -30.47700 -30.22172 -28.49549 -27.95215 -24.88391 -24.32212 -22.71825 -21.63976 -21.22980 -19.22641 -18.25706 -17.96170 -17.03206 -16.75167 -16.24194 -15.91826 -15.68479 -15.44586 -14.95234 -14.85517 -14.38680 -14.09461 -13.87660 -13.52156 -13.16005 -13.11765 -12.96717 -12.79317 -12.62173 -12.47576 -12.39217 -12.24236 -12.05012 -12.01865 -11.94330 -11.88891 -11.51774 -11.31472 -11.12272 -10.95210 -9.78897 -9.26247 -9.05384 -8.29820 -6.84008 1.39231 1.39667 1.57477 2.23435 2.45238 2.83553 3.01267 3.57172 3.67410 3.74972 3.84529 3.96064 4.07919 4.13372 4.23931 4.33250 4.40328 4.48160 4.61558 4.66652 4.70800 4.76723 4.84118 4.91341 4.92540 4.99373 5.00191 5.00688 5.07590 5.10705 5.16731 5.21954 5.27865 5.38257 5.39616 5.47991 5.77744 6.03042 6.13604 6.17895 6.41165 6.87834 7.42589 8.46618 8.67170 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.032400 B = 0.004924 C = 0.004856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.986142 B = 5685.032350 C = 5764.877319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.110 3.890 3 N -0.505 5.505 4 C 0.022 3.978 5 C -0.117 4.117 6 C -0.127 4.127 7 C 0.027 3.973 8 C -0.146 4.146 9 C 0.124 3.876 10 N -0.642 5.642 11 C 0.540 3.460 12 O -0.636 6.636 13 C -0.568 4.568 14 H 0.094 0.906 15 C 0.028 3.972 16 N -0.825 5.825 17 Si 0.995 3.005 18 H -0.244 1.244 19 H -0.268 1.268 20 H -0.271 1.271 21 C 0.120 3.880 22 C -0.108 4.108 23 H 0.057 0.943 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.034 0.966 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.087 0.913 34 H 0.044 0.956 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.042 0.958 38 H 0.273 0.727 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.044 0.956 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.601 18.222 2.593 18.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.020 3.980 3 N -0.228 5.228 4 C -0.106 4.106 5 C -0.155 4.155 6 C -0.165 4.165 7 C -0.101 4.101 8 C -0.186 4.186 9 C 0.000 4.000 10 N -0.379 5.379 11 C 0.347 3.653 12 O -0.523 6.523 13 C -0.605 4.605 14 H 0.112 0.888 15 C -0.186 4.186 16 N -0.454 5.454 17 Si 0.815 3.185 18 H -0.167 1.167 19 H -0.193 1.193 20 H -0.196 1.196 21 C -0.003 4.003 22 C -0.147 4.147 23 H 0.076 0.924 24 H 0.092 0.908 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.053 0.947 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.542 18.081 2.418 18.799 hybrid contribution 0.704 -1.297 -0.630 1.605 sum -3.838 16.785 1.788 17.310 Atomic orbital electron populations 1.21889 0.92311 1.02114 1.02850 1.21039 0.96318 0.87366 0.93250 1.65081 1.06357 1.11473 1.39856 1.23346 0.89131 0.97559 1.00578 1.22452 0.98566 0.95238 0.99259 1.22395 0.94992 1.00125 0.99023 1.22997 0.99173 0.96129 0.91792 1.22484 1.00103 0.95783 1.00196 1.21157 0.98605 0.92388 0.87891 1.48100 1.61525 1.22382 1.05886 1.18677 0.76890 0.79431 0.90340 1.90531 1.57572 1.68427 1.35805 1.21544 1.44228 1.02000 0.92691 0.88794 1.27007 0.92186 0.98024 1.01419 1.70207 1.31860 1.13855 1.29521 0.85004 0.78441 0.78096 0.76991 1.16668 1.19294 1.19555 1.21686 0.99496 0.92418 0.86723 1.21851 0.99803 0.94660 0.98352 0.92366 0.90783 0.91872 0.90731 0.94748 0.90595 0.90205 0.91476 0.89592 0.93669 0.89516 0.93703 0.90010 0.91789 0.93912 0.91686 0.90228 0.91384 0.93749 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 7.49 71.98 0.54 -2.62 16 2 C 0.11 3.02 0.43 3.56 0.00 3.02 16 3 N -0.50 -12.13 5.09 -833.53 -4.24 -16.37 16 4 C 0.02 0.53 5.40 86.65 0.47 1.00 16 5 C -0.12 -2.16 7.06 31.80 0.22 -1.93 16 6 C -0.13 -2.14 6.93 31.47 0.22 -1.92 16 7 C 0.03 0.53 5.21 86.45 0.45 0.98 16 8 C -0.15 -4.74 4.21 30.67 0.13 -4.61 16 9 C 0.12 5.04 5.97 86.36 0.52 5.56 16 10 N -0.64 -29.96 2.98 -823.28 -2.46 -32.42 16 11 C 0.54 32.21 7.62 86.36 0.66 32.86 16 12 O -0.64 -43.89 14.46 -4.31 -0.06 -43.95 16 13 C -0.57 -32.49 8.87 24.83 0.22 -32.27 16 14 H 0.09 4.80 5.70 -2.91 -0.02 4.78 16 15 C 0.03 1.60 5.50 85.30 0.47 2.07 16 16 N -0.82 -51.31 11.85 21.84 0.26 -51.06 16 17 Si 1.00 41.23 29.56 68.60 2.03 43.25 16 18 H -0.24 -9.23 7.11 99.48 0.71 -8.52 16 19 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 20 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 21 C 0.12 4.40 5.85 86.31 0.51 4.90 16 22 C -0.11 -3.29 4.83 30.67 0.15 -3.14 16 23 H 0.06 1.51 4.99 -2.39 -0.01 1.50 16 24 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.06 1.33 7.07 -2.39 -0.02 1.31 16 26 H 0.07 1.88 7.72 -2.38 -0.02 1.86 16 27 H 0.03 0.99 5.53 -2.39 -0.01 0.97 16 28 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.05 0.96 5.28 -2.39 -0.01 0.94 16 33 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.04 1.66 6.06 -2.39 -0.01 1.65 16 35 H 0.08 2.31 6.03 -2.38 -0.01 2.30 16 36 H 0.06 2.32 6.78 -2.38 -0.02 2.30 16 37 H 0.04 2.05 6.99 -2.39 -0.02 2.04 16 38 H 0.27 15.37 8.29 -92.71 -0.77 14.60 16 39 H 0.08 3.11 5.40 -2.39 -0.01 3.09 16 40 H 0.07 2.20 6.62 -2.39 -0.02 2.19 16 41 H 0.04 1.52 7.13 -2.39 -0.02 1.50 16 42 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -75.08 307.21 1.09 -73.99 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 1.02 Total: 22.68 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 4.55 Total: 3.88 kcal Atomic # 7 Polarization: -93.41 SS G_CDS: -6.44 Total: -99.85 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -0.06 Total: -43.95 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.25 kcal Total: -75.08 1.09 -73.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601740666.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.382 kcal (2) G-P(sol) polarization free energy of solvation -75.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds