Wall clock time and date at job start Mon Mar 30 2020 04:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 C 1.52997 * 109.47000 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47126 * 55.00700 * 11 10 9 13 13 N 1.46899 * 109.47230 * 295.00027 * 11 10 9 14 14 C 1.50707 * 109.46655 * 175.00530 * 11 10 9 15 15 O 1.21278 * 120.00488 * 100.00526 * 14 11 10 16 16 N 1.34777 * 119.99920 * 279.99764 * 14 11 10 17 17 C 1.46500 * 120.00319 * 180.02562 * 16 14 11 18 18 H 1.09001 * 110.05039 * 34.30270 * 17 16 14 19 19 C 1.54380 * 110.07228 * 272.81839 * 17 16 14 20 20 C 1.54920 * 104.22623 * 217.21645 * 19 17 16 21 21 C 1.54997 * 102.81849 * 37.71510 * 20 19 17 22 22 C 1.53475 * 110.07214 * 155.78804 * 17 16 14 23 23 C 1.52556 * 121.08824 * 335.14586 * 22 17 16 24 24 C 1.52573 * 121.05091 * 263.43289 * 22 17 16 25 25 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 27 27 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 28 28 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 29 29 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 30 30 H 1.00897 * 111.00224 * 300.00189 * 13 11 10 31 31 H 1.00903 * 110.99527 * 63.96255 * 13 11 10 32 32 H 0.97002 * 120.00238 * 0.02562 * 16 14 11 33 33 H 1.09002 * 110.48129 * 335.90299 * 19 17 16 34 34 H 1.08997 * 110.48350 * 98.53070 * 19 17 16 35 35 H 1.08996 * 110.74608 * 156.04911 * 20 19 17 36 36 H 1.08997 * 110.74466 * 279.38552 * 20 19 17 37 37 H 1.09007 * 110.50916 * 81.07420 * 21 20 19 38 38 H 1.08997 * 110.50850 * 203.64588 * 21 20 19 39 39 H 1.08997 * 117.50892 * 357.03592 * 23 22 17 40 40 H 1.09002 * 117.51074 * 142.11894 * 23 22 17 41 41 H 1.08997 * 117.51429 * 217.93674 * 24 22 17 42 42 H 1.09002 * 117.51341 * 3.02868 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 6 4.0216 -2.6365 -0.0108 11 6 5.5516 -2.6364 -0.0166 12 1 5.9181 -2.0488 0.8252 13 7 6.0365 -2.0484 -1.2724 14 6 6.0544 -4.0521 0.1023 15 8 6.4248 -4.6491 -0.8862 16 7 6.0925 -4.6547 1.3072 17 6 6.5818 -6.0308 1.4229 18 1 7.3781 -6.2063 0.6996 19 6 5.4249 -7.0259 1.1891 20 6 5.7055 -8.1772 2.1871 21 6 6.2435 -7.4287 3.4331 22 6 7.0962 -6.2890 2.8457 23 6 7.5853 -5.1434 3.7265 24 6 8.5802 -6.1703 3.1795 25 1 -0.4850 0.8400 -0.0004 26 1 3.8713 -0.6783 -0.8962 27 1 3.8786 -0.6819 0.8837 28 1 3.6619 -3.1521 0.8797 29 1 3.6545 -3.1485 -0.9003 30 1 5.7100 -2.5756 -2.0683 31 1 5.7668 -1.0788 -1.3455 32 1 5.7960 -4.1774 2.0979 33 1 4.4666 -6.5553 1.4094 34 1 5.4420 -7.3968 0.1644 35 1 4.7872 -8.7137 2.4257 36 1 6.4590 -8.8572 1.7900 37 1 5.4195 -7.0255 4.0218 38 1 6.8575 -8.0926 4.0418 39 1 7.6016 -4.1446 3.2904 40 1 7.3480 -5.1889 4.7894 41 1 8.9974 -6.8912 3.8826 42 1 9.2511 -5.8469 2.3836 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602583892.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:55 Heat of formation + Delta-G solvation = -34.894527 kcal Electronic energy + Delta-G solvation = -20554.437258 eV Core-core repulsion = 17533.939100 eV Total energy + Delta-G solvation = -3020.498158 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.30869 -38.71084 -35.61527 -34.49655 -33.52289 -32.79637 -30.31534 -28.34800 -26.68122 -25.48996 -23.53170 -22.74670 -21.07277 -20.45504 -19.79708 -19.13103 -17.41627 -16.68021 -16.29185 -15.64578 -15.28666 -14.74342 -14.50275 -14.40327 -14.20694 -13.73669 -13.27389 -13.15907 -12.77586 -12.75278 -12.66670 -12.05991 -11.78839 -11.74896 -11.34156 -11.24800 -11.13438 -10.98218 -10.80330 -10.50160 -10.36036 -10.13143 -10.04452 -9.87208 -9.35963 -9.31864 -8.93410 -8.62464 -8.31197 -6.12082 -4.11612 2.90266 3.13107 3.24722 3.32944 3.34239 3.64616 4.13510 4.37284 4.40067 4.59567 4.68557 4.95650 5.02599 5.05529 5.06835 5.20973 5.36925 5.41625 5.43328 5.47308 5.47681 5.61799 5.62672 5.68588 5.74003 5.82698 5.90102 5.94872 6.05397 6.14132 6.17903 6.33475 6.60734 6.66026 7.08643 7.21783 7.34697 7.66213 7.69067 7.78320 8.43804 8.46136 8.91916 9.49226 11.01173 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024541 B = 0.004158 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.659850 B = 6731.691277 C = 6929.113715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.071 0.929 9 C -0.010 4.010 10 C -0.129 4.129 11 C 0.071 3.929 12 H 0.095 0.905 13 N -0.831 5.831 14 C 0.526 3.474 15 O -0.538 6.538 16 N -0.727 5.727 17 C 0.178 3.822 18 H 0.089 0.911 19 C -0.134 4.134 20 C -0.121 4.121 21 C -0.087 4.087 22 C -0.142 4.142 23 C -0.167 4.167 24 C -0.162 4.162 25 H 0.264 0.736 26 H 0.011 0.989 27 H 0.018 0.982 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.348 0.652 31 H 0.350 0.650 32 H 0.401 0.599 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.050 -12.597 7.904 21.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.169 4.169 11 C -0.044 4.044 12 H 0.113 0.887 13 N -0.363 5.363 14 C 0.313 3.687 15 O -0.413 6.413 16 N -0.380 5.380 17 C 0.074 3.926 18 H 0.107 0.893 19 C -0.173 4.173 20 C -0.159 4.159 21 C -0.124 4.124 22 C -0.143 4.143 23 C -0.204 4.204 24 C -0.199 4.199 25 H 0.074 0.926 26 H 0.029 0.971 27 H 0.036 0.964 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.161 0.839 31 H 0.164 0.836 32 H 0.236 0.764 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 15.898 -13.060 7.439 21.878 hybrid contribution -0.914 1.335 0.206 1.631 sum 14.985 -11.725 7.644 20.505 Atomic orbital electron populations 1.69913 1.06337 1.27008 1.50695 1.25042 0.94751 0.99215 0.94416 0.86769 0.80308 0.83549 0.78586 1.20209 1.21321 1.18990 1.21066 0.89233 0.94525 1.51315 0.91084 1.19575 0.97551 0.91392 0.96269 1.22191 0.91285 1.01051 1.02326 1.21512 0.95687 0.91785 0.95404 0.88698 1.58732 1.66783 1.07362 1.03381 1.20790 0.76629 0.88589 0.82715 1.90632 1.47440 1.66442 1.36815 1.46132 1.66987 1.14862 1.09972 1.20950 0.96153 0.81365 0.94181 0.89257 1.22791 0.98757 0.95824 0.99891 1.22436 1.00927 0.97228 0.95279 1.21891 0.98317 0.94983 0.97247 1.22025 0.96682 0.99773 0.95788 1.22920 1.03468 0.94804 0.99228 1.22967 0.91249 1.02323 1.03332 0.92632 0.97065 0.96377 0.91917 0.92092 0.83853 0.83567 0.76402 0.90723 0.90978 0.91181 0.91319 0.90915 0.91515 0.88370 0.88446 0.88595 0.88693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.96 55.43 0.77 -26.61 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.09 27.46 -169.99 -4.67 16.42 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.02 6.55 56.52 0.37 -5.65 16 7 C -0.52 -14.52 9.66 -34.44 -0.33 -14.85 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C -0.01 -0.23 3.81 -27.88 -0.11 -0.34 16 10 C -0.13 -2.43 4.78 -26.73 -0.13 -2.55 16 11 C 0.07 1.15 3.21 -68.86 -0.22 0.93 16 12 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 13 N -0.83 -13.53 8.94 -5.65 -0.05 -13.58 16 14 C 0.53 8.43 7.07 -10.98 -0.08 8.36 16 15 O -0.54 -10.27 15.92 5.56 0.09 -10.18 16 16 N -0.73 -9.24 4.58 -52.86 -0.24 -9.48 16 17 C 0.18 2.08 3.08 -66.96 -0.21 1.87 16 18 H 0.09 1.20 7.59 -51.93 -0.39 0.81 16 19 C -0.13 -1.51 6.54 -24.99 -0.16 -1.67 16 20 C -0.12 -1.05 6.91 -24.66 -0.17 -1.22 16 21 C -0.09 -0.71 6.59 -25.16 -0.17 -0.88 16 22 C -0.14 -1.31 2.31 -154.19 -0.36 -1.66 16 23 C -0.17 -1.41 9.48 -26.91 -0.26 -1.67 16 24 C -0.16 -1.35 10.24 -26.90 -0.28 -1.63 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.01 0.25 6.29 -51.93 -0.33 -0.08 16 27 H 0.02 0.40 7.21 -51.93 -0.37 0.03 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.35 5.80 8.58 -39.29 -0.34 5.47 16 31 H 0.35 5.49 7.55 -39.29 -0.30 5.19 16 32 H 0.40 4.45 7.66 -40.82 -0.31 4.14 16 33 H 0.07 0.91 8.05 -51.93 -0.42 0.49 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 38 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 39 H 0.10 0.88 7.38 -51.93 -0.38 0.50 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 336.90 15.07 5.08 5.08 Total: -1.00 -31.57 336.90 -8.65 -40.22 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -7.08 Total: 11.63 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -2.56 Total: -13.50 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: 0.48 Total: -49.68 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.57 -8.65 -40.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602583892.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.329 kcal (2) G-P(sol) polarization free energy of solvation -31.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds