Wall clock time and date at job start Mon Mar 30 2020 04:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 C 1.52997 * 109.47000 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47126 * 55.00700 * 11 10 9 13 13 N 1.46899 * 109.47230 * 295.00027 * 11 10 9 14 14 C 1.50707 * 109.46655 * 175.00530 * 11 10 9 15 15 O 1.21278 * 120.00488 * 100.00526 * 14 11 10 16 16 N 1.34777 * 119.99920 * 279.99764 * 14 11 10 17 17 C 1.46500 * 120.00319 * 180.02562 * 16 14 11 18 18 H 1.09001 * 110.05039 * 34.30270 * 17 16 14 19 19 C 1.54380 * 110.07228 * 272.81839 * 17 16 14 20 20 C 1.54920 * 104.22623 * 217.21645 * 19 17 16 21 21 C 1.54997 * 102.81849 * 37.71510 * 20 19 17 22 22 C 1.53475 * 110.07214 * 155.78804 * 17 16 14 23 23 C 1.52556 * 121.08824 * 335.14586 * 22 17 16 24 24 C 1.52573 * 121.05091 * 263.43289 * 22 17 16 25 25 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 27 27 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 28 28 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 29 29 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 30 30 H 1.00897 * 111.00224 * 300.00189 * 13 11 10 31 31 H 1.00903 * 110.99527 * 63.96255 * 13 11 10 32 32 H 0.97002 * 120.00238 * 0.02562 * 16 14 11 33 33 H 1.09002 * 110.48129 * 335.90299 * 19 17 16 34 34 H 1.08997 * 110.48350 * 98.53070 * 19 17 16 35 35 H 1.08996 * 110.74608 * 156.04911 * 20 19 17 36 36 H 1.08997 * 110.74466 * 279.38552 * 20 19 17 37 37 H 1.09007 * 110.50916 * 81.07420 * 21 20 19 38 38 H 1.08997 * 110.50850 * 203.64588 * 21 20 19 39 39 H 1.08997 * 117.50892 * 357.03592 * 23 22 17 40 40 H 1.09002 * 117.51074 * 142.11894 * 23 22 17 41 41 H 1.08997 * 117.51429 * 217.93674 * 24 22 17 42 42 H 1.09002 * 117.51341 * 3.02868 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 6 4.0216 -2.6365 -0.0108 11 6 5.5516 -2.6364 -0.0166 12 1 5.9181 -2.0488 0.8252 13 7 6.0365 -2.0484 -1.2724 14 6 6.0544 -4.0521 0.1023 15 8 6.4248 -4.6491 -0.8862 16 7 6.0925 -4.6547 1.3072 17 6 6.5818 -6.0308 1.4229 18 1 7.3781 -6.2063 0.6996 19 6 5.4249 -7.0259 1.1891 20 6 5.7055 -8.1772 2.1871 21 6 6.2435 -7.4287 3.4331 22 6 7.0962 -6.2890 2.8457 23 6 7.5853 -5.1434 3.7265 24 6 8.5802 -6.1703 3.1795 25 1 -0.4850 0.8400 -0.0004 26 1 3.8713 -0.6783 -0.8962 27 1 3.8786 -0.6819 0.8837 28 1 3.6619 -3.1521 0.8797 29 1 3.6545 -3.1485 -0.9003 30 1 5.7100 -2.5756 -2.0683 31 1 5.7668 -1.0788 -1.3455 32 1 5.7960 -4.1774 2.0979 33 1 4.4666 -6.5553 1.4094 34 1 5.4420 -7.3968 0.1644 35 1 4.7872 -8.7137 2.4257 36 1 6.4590 -8.8572 1.7900 37 1 5.4195 -7.0255 4.0218 38 1 6.8575 -8.0926 4.0418 39 1 7.6016 -4.1446 3.2904 40 1 7.3480 -5.1889 4.7894 41 1 8.9974 -6.8912 3.8826 42 1 9.2511 -5.8469 2.3836 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602583892.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:54 Heat of formation + Delta-G solvation = -56.692860 kcal Electronic energy + Delta-G solvation = -20555.382505 eV Core-core repulsion = 17533.939100 eV Total energy + Delta-G solvation = -3021.443404 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.36660 -39.74532 -37.11951 -35.37617 -34.82044 -34.50366 -32.08832 -29.41380 -28.02973 -26.52912 -25.04278 -23.44170 -22.28958 -21.79280 -21.01438 -20.01837 -19.07255 -18.34399 -17.29982 -16.55534 -16.28902 -16.15399 -15.95027 -15.74775 -15.57297 -14.94274 -14.73975 -14.43434 -14.30593 -13.79115 -13.60210 -13.53747 -13.08625 -12.84063 -12.64269 -12.38239 -12.10069 -12.00480 -11.92841 -11.89598 -11.67465 -11.64145 -11.41711 -11.17645 -10.92446 -10.77808 -10.61298 -10.03200 -9.67127 -8.30309 -6.36000 1.38335 1.39556 1.51076 1.60896 2.08853 2.35898 2.88735 3.05329 3.37357 3.63134 3.72402 3.79398 3.87419 4.00588 4.08349 4.17606 4.25090 4.27909 4.46805 4.57154 4.65218 4.71013 4.75184 4.79373 4.89218 4.93707 5.00491 5.04081 5.08728 5.15917 5.26348 5.27231 5.34411 5.39798 5.45347 5.55427 5.62009 6.04934 6.24552 6.47448 6.55380 6.72392 7.24572 7.28921 8.86551 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024541 B = 0.004158 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.659850 B = 6731.691277 C = 6929.113715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.003 3.997 3 Si 0.954 3.046 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.237 1.237 7 C -0.535 4.535 8 H 0.026 0.974 9 C -0.006 4.006 10 C -0.117 4.117 11 C 0.081 3.919 12 H 0.118 0.882 13 N -0.830 5.830 14 C 0.524 3.476 15 O -0.573 6.573 16 N -0.712 5.712 17 C 0.175 3.825 18 H 0.068 0.932 19 C -0.136 4.136 20 C -0.115 4.115 21 C -0.081 4.081 22 C -0.148 4.148 23 C -0.163 4.163 24 C -0.157 4.157 25 H 0.266 0.734 26 H 0.023 0.977 27 H 0.032 0.968 28 H 0.063 0.937 29 H 0.040 0.960 30 H 0.345 0.655 31 H 0.354 0.646 32 H 0.411 0.589 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.283 -12.054 9.591 23.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.777 3.223 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.160 1.160 7 C -0.573 4.573 8 H 0.044 0.956 9 C -0.043 4.043 10 C -0.157 4.157 11 C -0.034 4.034 12 H 0.136 0.864 13 N -0.362 5.362 14 C 0.311 3.689 15 O -0.452 6.452 16 N -0.364 5.364 17 C 0.071 3.929 18 H 0.086 0.914 19 C -0.175 4.175 20 C -0.153 4.153 21 C -0.119 4.119 22 C -0.149 4.149 23 C -0.200 4.200 24 C -0.194 4.194 25 H 0.075 0.925 26 H 0.041 0.959 27 H 0.051 0.949 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.158 0.842 31 H 0.170 0.830 32 H 0.248 0.752 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.131 0.869 41 H 0.133 0.867 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 18.150 -12.536 9.161 23.885 hybrid contribution -1.671 1.070 -0.337 2.013 sum 16.479 -11.465 8.824 21.929 Atomic orbital electron populations 1.70083 1.08542 1.28249 1.52465 1.26076 0.95613 1.03756 0.93927 0.85606 0.79753 0.77740 0.79222 1.19317 1.21334 1.15993 1.21433 0.92186 0.92905 1.50777 0.95608 1.19500 0.93833 0.93756 0.97210 1.22006 0.93489 0.98748 1.01467 1.21441 0.93324 0.92418 0.96259 0.86385 1.58750 1.66539 1.07622 1.03281 1.20793 0.76476 0.88512 0.83130 1.90620 1.49307 1.67100 1.38135 1.46062 1.65685 1.15314 1.09340 1.21020 0.95702 0.80570 0.95624 0.91352 1.22760 0.98032 0.96886 0.99825 1.22427 1.01668 0.96390 0.94788 1.21887 0.98410 0.94672 0.96908 1.21970 0.97693 1.00923 0.94291 1.22996 1.02954 0.94229 0.99852 1.23036 0.90491 1.02568 1.03288 0.92507 0.95872 0.94944 0.91819 0.94130 0.84236 0.83027 0.75204 0.91861 0.92717 0.90252 0.90661 0.90667 0.89682 0.88944 0.86857 0.86739 0.89576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.29 13.96 21.45 0.30 -58.99 16 2 C 0.00 0.17 5.47 84.65 0.46 0.63 16 3 Si 0.95 42.52 27.46 68.60 1.88 44.40 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.24 -9.42 6.55 99.48 0.65 -8.76 16 7 C -0.54 -30.09 9.66 25.60 0.25 -29.85 16 8 H 0.03 1.62 7.99 -2.91 -0.02 1.60 16 9 C -0.01 -0.24 3.81 29.85 0.11 -0.13 16 10 C -0.12 -4.35 4.78 30.59 0.15 -4.20 16 11 C 0.08 2.48 3.21 44.17 0.14 2.62 16 12 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 13 N -0.83 -25.75 8.94 -171.80 -1.54 -27.29 16 14 C 0.52 16.51 7.07 87.66 0.62 17.13 16 15 O -0.57 -22.05 15.92 -3.02 -0.05 -22.10 16 16 N -0.71 -17.50 4.58 -439.55 -2.01 -19.51 16 17 C 0.18 4.00 3.08 45.62 0.14 4.14 16 18 H 0.07 1.87 7.59 -2.39 -0.02 1.85 16 19 C -0.14 -3.07 6.54 31.72 0.21 -2.86 16 20 C -0.11 -1.83 6.91 31.93 0.22 -1.61 16 21 C -0.08 -1.13 6.59 31.61 0.21 -0.92 16 22 C -0.15 -2.44 2.31 -51.98 -0.12 -2.56 16 23 C -0.16 -2.34 9.48 30.48 0.29 -2.05 16 24 C -0.16 -2.25 10.24 30.48 0.31 -1.94 16 25 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 26 H 0.02 0.96 6.29 -2.39 -0.02 0.94 16 27 H 0.03 1.33 7.21 -2.38 -0.02 1.31 16 28 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.34 11.28 8.58 -89.70 -0.77 10.51 16 31 H 0.35 10.28 7.55 -89.69 -0.68 9.60 16 32 H 0.41 8.44 7.66 -92.71 -0.71 7.73 16 33 H 0.06 1.55 8.05 -2.39 -0.02 1.53 16 34 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.08 0.91 8.11 -2.39 -0.02 0.89 16 39 H 0.09 1.44 7.38 -2.39 -0.02 1.42 16 40 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -69.60 336.90 0.39 -69.21 By element: Atomic # 1 Polarization: 37.05 SS G_CDS: -1.19 Total: 35.87 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: 2.99 Total: -21.59 kcal Atomic # 7 Polarization: -102.54 SS G_CDS: -3.25 Total: -105.78 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.05 Total: -22.10 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 1.88 Total: 44.40 kcal Total: -69.60 0.39 -69.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602583892.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.516 kcal (2) G-P(sol) polarization free energy of solvation -69.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds