Wall clock time and date at job start Mon Mar 30 2020 04:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86790 * 120.00206 * 2 1 4 4 H 1.48506 * 109.47301 * 269.99685 * 3 2 1 5 5 H 1.48495 * 109.47406 * 29.99715 * 3 2 1 6 6 H 1.48500 * 109.47168 * 150.00339 * 3 2 1 7 7 C 1.37880 * 119.99463 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99748 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00137 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46952 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47061 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47431 * 179.97438 * 11 10 9 13 13 H 1.09008 * 109.46660 * 54.99908 * 12 11 10 14 14 N 1.46902 * 109.47140 * 295.00453 * 12 11 10 15 15 C 1.50693 * 109.47307 * 174.99944 * 12 11 10 16 16 O 1.21283 * 120.00174 * 100.00615 * 15 12 11 17 17 N 1.34783 * 119.99944 * 279.99876 * 15 12 11 18 18 C 1.49244 * 126.71407 * 179.97438 * 17 15 12 19 19 C 1.50768 * 104.77332 * 188.40572 * 18 17 15 20 20 H 1.09003 * 112.66340 * 78.46991 * 19 18 17 21 21 C 1.49257 * 131.43430 * 236.94987 * 19 18 17 22 22 C 1.56696 * 80.83260 * 134.95814 * 21 19 18 23 23 C 1.49761 * 81.07727 * 314.01091 * 22 21 19 24 24 H 1.08997 * 114.09252 * 291.96351 * 23 22 21 25 25 C 1.49625 * 126.71842 * 0.03048 * 17 15 12 26 26 H 0.97006 * 119.99509 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.46853 * 60.00117 * 9 7 2 28 28 H 1.09002 * 109.46716 * 300.00204 * 9 7 2 29 29 H 1.08996 * 109.47674 * 60.00095 * 10 9 7 30 30 H 1.08997 * 109.47008 * 300.00152 * 10 9 7 31 31 H 1.09007 * 109.47213 * 59.99824 * 11 10 9 32 32 H 1.08997 * 109.47310 * 299.99937 * 11 10 9 33 33 H 1.00896 * 111.00110 * 176.04439 * 14 12 11 34 34 H 1.00906 * 110.99521 * 299.99276 * 14 12 11 35 35 H 1.09002 * 110.39878 * 307.26289 * 18 17 15 36 36 H 1.09004 * 110.39679 * 69.54997 * 18 17 15 37 37 H 1.08999 * 114.59872 * 21.96087 * 21 19 18 38 38 H 1.08995 * 114.66813 * 247.95716 * 21 19 18 39 39 H 1.09004 * 114.59434 * 200.96760 * 22 21 19 40 40 H 1.08997 * 114.60218 * 67.05677 * 22 21 19 41 41 H 1.09001 * 110.94939 * 325.69849 * 25 17 15 42 42 H 1.09000 * 110.95220 * 89.37147 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 6 2.4741 -6.1501 -0.0018 13 1 3.1583 -6.0437 0.8401 14 7 3.2372 -6.1413 -1.2570 15 6 1.7247 -7.4517 0.1214 16 8 1.5123 -8.1249 -0.8648 17 7 1.2904 -7.8677 1.3276 18 6 0.5380 -9.1228 1.6208 19 6 0.1228 -8.9938 3.0645 20 1 -0.7405 -8.3416 3.1965 21 6 0.3744 -9.8696 4.2466 22 6 0.6875 -8.4782 4.8956 23 6 1.4524 -8.3162 3.6184 24 1 2.3239 -8.9657 3.5361 25 6 1.4673 -7.1611 2.6346 26 1 -0.4850 0.8401 -0.0004 27 1 0.6239 -2.5567 -0.8903 28 1 0.6245 -2.5570 0.8897 29 1 2.8717 -3.6045 0.8894 30 1 2.8717 -3.6044 -0.8905 31 1 0.8536 -5.0446 -0.8914 32 1 0.8530 -5.0451 0.8885 33 1 3.9449 -6.8605 -1.2551 34 1 2.6249 -6.2388 -2.0531 35 1 -0.3394 -9.1986 0.9785 36 1 1.1821 -9.9919 1.4870 37 1 1.2364 -10.5292 4.1473 38 1 -0.5118 -10.3663 4.6415 39 1 1.3060 -8.5246 5.7920 40 1 -0.1750 -7.8192 4.9946 41 1 2.4210 -6.6342 2.6668 42 1 0.6398 -6.4771 2.8230 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688318335.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:18 Heat of formation + Delta-G solvation = 31.132153 kcal Electronic energy + Delta-G solvation = -20418.318516 eV Core-core repulsion = 17400.683490 eV Total energy + Delta-G solvation = -3017.635026 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.75820 -39.36421 -35.67883 -35.00215 -33.31402 -31.32897 -29.48142 -28.61425 -27.50170 -24.85609 -23.88728 -22.42820 -21.23646 -20.95460 -19.99446 -19.13966 -17.15710 -16.54910 -16.27466 -15.70473 -15.40471 -14.85767 -14.75066 -14.43089 -14.09693 -13.70550 -13.63834 -13.05822 -12.65485 -12.39081 -12.22500 -12.05153 -11.84660 -11.65773 -11.57611 -11.45010 -11.15407 -11.09421 -10.72508 -10.58027 -10.40188 -10.15494 -9.58445 -9.43736 -9.20804 -9.02938 -8.81627 -8.54229 -8.28141 -5.93980 -3.95506 2.58889 2.74260 3.17279 3.36103 3.41987 3.45669 4.03217 4.32125 4.36201 4.47590 4.53046 4.71408 4.93762 4.99974 5.05019 5.05817 5.21396 5.34690 5.40609 5.41835 5.45944 5.49380 5.53348 5.58853 5.67247 5.79487 5.95589 5.98613 6.00081 6.17477 6.46582 6.84097 7.03346 7.12807 7.26256 7.41577 7.53555 7.76418 7.92085 8.07704 8.10068 8.51138 9.12142 9.68157 11.17485 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022888 B = 0.003856 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.036910 B = 7259.471862 C = 8033.360120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.099 4.099 11 C -0.102 4.102 12 C 0.082 3.918 13 H 0.099 0.901 14 N -0.811 5.811 15 C 0.501 3.499 16 O -0.552 6.552 17 N -0.624 5.624 18 C 0.127 3.873 19 C -0.168 4.168 20 H 0.104 0.896 21 C -0.105 4.105 22 C -0.105 4.105 23 C -0.164 4.164 24 H 0.105 0.895 25 C 0.118 3.882 26 H 0.259 0.741 27 H 0.014 0.986 28 H 0.012 0.988 29 H 0.044 0.956 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.337 0.663 34 H 0.350 0.650 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.964 -20.162 9.665 22.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.554 4.554 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.137 4.137 11 C -0.140 4.140 12 C -0.033 4.033 13 H 0.117 0.883 14 N -0.339 5.339 15 C 0.289 3.711 16 O -0.430 6.430 17 N -0.360 5.360 18 C 0.005 3.995 19 C -0.187 4.187 20 H 0.122 0.878 21 C -0.142 4.142 22 C -0.142 4.142 23 C -0.183 4.183 24 H 0.123 0.877 25 C -0.003 4.003 26 H 0.069 0.931 27 H 0.032 0.968 28 H 0.030 0.970 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.149 0.851 34 H 0.164 0.836 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.114 0.886 41 H 0.101 0.899 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.974 -19.597 9.187 21.733 hybrid contribution -0.049 -0.055 -0.173 0.188 sum 1.925 -19.651 9.014 21.706 Atomic orbital electron populations 1.69978 1.06054 1.26431 1.51289 1.25033 0.94830 0.99214 0.95505 0.86612 0.79843 0.83565 0.78088 1.20708 1.21334 1.19881 1.21285 0.93079 0.91097 1.49968 0.92656 1.19119 0.94103 0.91630 0.96909 1.21532 0.98750 0.92261 1.01129 1.21629 0.96548 0.93965 1.01889 1.21745 0.95766 0.90716 0.95121 0.88326 1.59078 1.17341 1.54155 1.03352 1.22285 0.79085 0.88740 0.81038 1.90671 1.58326 1.57789 1.36229 1.50079 1.56242 1.22535 1.07176 1.21028 0.96140 0.87396 0.94915 1.23513 0.99112 1.02793 0.93252 0.87754 1.22671 1.01983 0.95511 0.94062 1.22762 0.99714 0.96574 0.95186 1.23819 0.97494 0.99172 0.97837 0.87668 1.21719 1.02795 0.93876 0.81939 0.93135 0.96792 0.96990 0.93709 0.91842 0.92009 0.92012 0.85074 0.83582 0.91198 0.91679 0.89027 0.90991 0.90898 0.88582 0.89912 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.10 -2.06 5.04 -26.73 -0.13 -2.19 16 11 C -0.10 -1.76 4.84 -26.73 -0.13 -1.89 16 12 C 0.08 1.20 2.61 -68.87 -0.18 1.02 16 13 H 0.10 1.31 7.01 -51.92 -0.36 0.95 16 14 N -0.81 -11.76 8.44 -5.65 -0.05 -11.80 16 15 C 0.50 7.54 7.13 -10.99 -0.08 7.46 16 16 O -0.55 -9.98 16.65 5.55 0.09 -9.89 16 17 N -0.62 -7.71 3.43 -170.89 -0.59 -8.30 16 18 C 0.13 1.35 6.77 -3.64 -0.02 1.33 16 19 C -0.17 -1.32 4.29 -105.33 -0.45 -1.77 16 20 H 0.10 0.84 7.38 -51.93 -0.38 0.46 16 21 C -0.10 -0.61 8.09 -40.24 -0.33 -0.93 16 22 C -0.10 -0.62 8.07 -41.53 -0.34 -0.96 16 23 C -0.16 -1.25 4.47 -103.08 -0.46 -1.72 16 24 H 0.11 0.80 7.54 -51.93 -0.39 0.41 16 25 C 0.12 1.17 6.16 -2.95 -0.02 1.15 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.06 1.36 7.75 -51.93 -0.40 0.96 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 1.02 7.75 -51.93 -0.40 0.62 16 33 H 0.34 4.26 9.06 -39.29 -0.36 3.91 16 34 H 0.35 5.27 8.58 -39.29 -0.34 4.93 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.49 7.58 -51.93 -0.39 0.10 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.10 0.56 7.51 -51.93 -0.39 0.17 16 41 H 0.08 0.79 7.02 -51.93 -0.36 0.42 16 42 H 0.08 0.81 8.12 -51.93 -0.42 0.39 16 LS Contribution 336.16 15.07 5.07 5.07 Total: -1.00 -32.91 336.16 -9.58 -42.48 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -7.13 Total: 3.96 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -2.69 Total: -11.81 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: 0.10 Total: -46.75 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.91 -9.58 -42.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688318335.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.616 kcal (2) G-P(sol) polarization free energy of solvation -32.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds