Wall clock time and date at job start Mon Mar 30 2020 04:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86790 * 120.00206 * 2 1 4 4 H 1.48506 * 109.47301 * 269.99685 * 3 2 1 5 5 H 1.48495 * 109.47406 * 29.99715 * 3 2 1 6 6 H 1.48500 * 109.47168 * 150.00339 * 3 2 1 7 7 C 1.37880 * 119.99463 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99748 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00137 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46952 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47061 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47431 * 179.97438 * 11 10 9 13 13 H 1.09008 * 109.46660 * 54.99908 * 12 11 10 14 14 N 1.46902 * 109.47140 * 295.00453 * 12 11 10 15 15 C 1.50693 * 109.47307 * 174.99944 * 12 11 10 16 16 O 1.21283 * 120.00174 * 100.00615 * 15 12 11 17 17 N 1.34783 * 119.99944 * 279.99876 * 15 12 11 18 18 C 1.49244 * 126.71407 * 179.97438 * 17 15 12 19 19 C 1.50768 * 104.77332 * 188.40572 * 18 17 15 20 20 H 1.09003 * 112.66340 * 78.46991 * 19 18 17 21 21 C 1.49257 * 131.43430 * 236.94987 * 19 18 17 22 22 C 1.56696 * 80.83260 * 134.95814 * 21 19 18 23 23 C 1.49761 * 81.07727 * 314.01091 * 22 21 19 24 24 H 1.08997 * 114.09252 * 291.96351 * 23 22 21 25 25 C 1.49625 * 126.71842 * 0.03048 * 17 15 12 26 26 H 0.97006 * 119.99509 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.46853 * 60.00117 * 9 7 2 28 28 H 1.09002 * 109.46716 * 300.00204 * 9 7 2 29 29 H 1.08996 * 109.47674 * 60.00095 * 10 9 7 30 30 H 1.08997 * 109.47008 * 300.00152 * 10 9 7 31 31 H 1.09007 * 109.47213 * 59.99824 * 11 10 9 32 32 H 1.08997 * 109.47310 * 299.99937 * 11 10 9 33 33 H 1.00896 * 111.00110 * 176.04439 * 14 12 11 34 34 H 1.00906 * 110.99521 * 299.99276 * 14 12 11 35 35 H 1.09002 * 110.39878 * 307.26289 * 18 17 15 36 36 H 1.09004 * 110.39679 * 69.54997 * 18 17 15 37 37 H 1.08999 * 114.59872 * 21.96087 * 21 19 18 38 38 H 1.08995 * 114.66813 * 247.95716 * 21 19 18 39 39 H 1.09004 * 114.59434 * 200.96760 * 22 21 19 40 40 H 1.08997 * 114.60218 * 67.05677 * 22 21 19 41 41 H 1.09001 * 110.94939 * 325.69849 * 25 17 15 42 42 H 1.09000 * 110.95220 * 89.37147 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 6 2.4741 -6.1501 -0.0018 13 1 3.1583 -6.0437 0.8401 14 7 3.2372 -6.1413 -1.2570 15 6 1.7247 -7.4517 0.1214 16 8 1.5123 -8.1249 -0.8648 17 7 1.2904 -7.8677 1.3276 18 6 0.5380 -9.1228 1.6208 19 6 0.1228 -8.9938 3.0645 20 1 -0.7405 -8.3416 3.1965 21 6 0.3744 -9.8696 4.2466 22 6 0.6875 -8.4782 4.8956 23 6 1.4524 -8.3162 3.6184 24 1 2.3239 -8.9657 3.5361 25 6 1.4673 -7.1611 2.6346 26 1 -0.4850 0.8401 -0.0004 27 1 0.6239 -2.5567 -0.8903 28 1 0.6245 -2.5570 0.8897 29 1 2.8717 -3.6045 0.8894 30 1 2.8717 -3.6044 -0.8905 31 1 0.8536 -5.0446 -0.8914 32 1 0.8530 -5.0451 0.8885 33 1 3.9449 -6.8605 -1.2551 34 1 2.6249 -6.2388 -2.0531 35 1 -0.3394 -9.1986 0.9785 36 1 1.1821 -9.9919 1.4870 37 1 1.2364 -10.5292 4.1473 38 1 -0.5118 -10.3663 4.6415 39 1 1.3060 -8.5246 5.7920 40 1 -0.1750 -7.8192 4.9946 41 1 2.4210 -6.6342 2.6668 42 1 0.6398 -6.4771 2.8230 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688318335.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:18 Heat of formation + Delta-G solvation = 9.363132 kcal Electronic energy + Delta-G solvation = -20419.262492 eV Core-core repulsion = 17400.683490 eV Total energy + Delta-G solvation = -3018.579002 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.47802 -40.48345 -37.16848 -35.90910 -35.24791 -33.14720 -30.39252 -29.67043 -28.97027 -26.44484 -24.57574 -23.95564 -22.04551 -21.69426 -21.65451 -20.20488 -18.45251 -18.27381 -17.53167 -16.98533 -16.47101 -16.44089 -15.70208 -15.50684 -15.47493 -14.75274 -14.54336 -14.39919 -14.30748 -13.81143 -13.45651 -13.14154 -12.92847 -12.77082 -12.69214 -12.47653 -12.44807 -12.34222 -12.18433 -12.14135 -11.77563 -11.50372 -11.39774 -11.23533 -10.97931 -10.51950 -10.05620 -9.82344 -9.75413 -8.16814 -6.27419 1.40637 1.42305 1.43625 1.54777 1.77376 2.43957 2.51422 3.16325 3.37795 3.52831 3.60279 3.69776 3.77859 3.92581 4.09386 4.19299 4.26978 4.36839 4.45044 4.50359 4.57018 4.62942 4.69660 4.87526 4.92392 4.95580 4.99686 5.10952 5.12530 5.14187 5.22669 5.24298 5.32777 5.43114 5.60044 5.82731 5.92444 5.97921 6.30000 6.35520 6.41886 6.90042 6.95570 7.41694 8.95101 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022888 B = 0.003856 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.036910 B = 7259.471862 C = 8033.360120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.965 3.035 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.539 4.539 8 H 0.060 0.940 9 C 0.022 3.978 10 C -0.082 4.082 11 C -0.091 4.091 12 C 0.093 3.907 13 H 0.119 0.881 14 N -0.816 5.816 15 C 0.498 3.502 16 O -0.589 6.589 17 N -0.623 5.623 18 C 0.121 3.879 19 C -0.167 4.167 20 H 0.102 0.898 21 C -0.095 4.095 22 C -0.098 4.098 23 C -0.157 4.157 24 H 0.111 0.889 25 C 0.109 3.891 26 H 0.262 0.738 27 H -0.017 1.017 28 H -0.008 1.008 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.043 0.957 32 H 0.068 0.932 33 H 0.349 0.651 34 H 0.346 0.654 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.291 -20.484 11.447 23.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.789 3.211 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.577 4.577 8 H 0.079 0.921 9 C -0.015 4.015 10 C -0.119 4.119 11 C -0.130 4.130 12 C -0.023 4.023 13 H 0.137 0.863 14 N -0.345 5.345 15 C 0.285 3.715 16 O -0.470 6.470 17 N -0.357 5.357 18 C 0.000 4.000 19 C -0.186 4.186 20 H 0.120 0.880 21 C -0.132 4.132 22 C -0.136 4.136 23 C -0.176 4.176 24 H 0.129 0.871 25 C -0.011 4.011 26 H 0.071 0.929 27 H 0.001 0.999 28 H 0.011 0.989 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.162 0.838 34 H 0.159 0.841 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.108 0.892 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.313 -19.937 11.012 23.015 hybrid contribution -0.512 0.023 -0.712 0.878 sum 2.801 -19.913 10.300 22.594 Atomic orbital electron populations 1.70113 1.07841 1.27642 1.52034 1.25995 0.95754 1.03384 0.94845 0.85453 0.78783 0.78457 0.78398 1.20060 1.20720 1.18487 1.21726 0.93592 0.92387 1.50039 0.92127 1.19045 0.94532 0.93477 0.94425 1.21269 0.97521 0.91843 1.01304 1.21421 0.96685 0.93457 1.01411 1.21576 0.95316 0.89438 0.95950 0.86338 1.59080 1.17510 1.54770 1.03117 1.22225 0.79154 0.88673 0.81414 1.90649 1.59884 1.58859 1.37637 1.50196 1.55064 1.23127 1.07312 1.21136 0.95448 0.86769 0.96649 1.23555 0.99240 1.04002 0.91758 0.87960 1.22703 1.02846 0.95494 0.92162 1.22776 0.99572 0.96431 0.94772 1.23885 0.97523 0.97635 0.98517 0.87121 1.21910 1.03048 0.94717 0.81448 0.92888 0.99872 0.98922 0.92483 0.92475 0.93783 0.91344 0.83756 0.84094 0.92853 0.91399 0.88138 0.89859 0.89515 0.88389 0.89237 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.87 13.29 21.45 0.28 -57.59 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 3 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 7 C -0.54 -31.25 9.11 25.60 0.23 -31.02 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 9 C 0.02 1.20 4.97 29.85 0.15 1.35 16 10 C -0.08 -3.39 5.04 30.59 0.15 -3.23 16 11 C -0.09 -3.16 4.84 30.59 0.15 -3.02 16 12 C 0.09 2.64 2.61 44.17 0.12 2.76 16 13 H 0.12 2.91 7.01 -2.38 -0.02 2.90 16 14 N -0.82 -23.22 8.44 -171.80 -1.45 -24.67 16 15 C 0.50 14.87 7.13 87.65 0.63 15.49 16 16 O -0.59 -21.58 16.65 -3.04 -0.05 -21.63 16 17 N -0.62 -14.97 3.43 -812.95 -2.79 -17.75 16 18 C 0.12 2.52 6.77 85.12 0.58 3.10 16 19 C -0.17 -2.35 4.29 -20.32 -0.09 -2.43 16 20 H 0.10 1.51 7.38 -2.39 -0.02 1.49 16 21 C -0.09 -0.84 8.09 21.84 0.18 -0.66 16 22 C -0.10 -0.89 8.07 21.01 0.17 -0.72 16 23 C -0.16 -2.03 4.47 -18.87 -0.08 -2.12 16 24 H 0.11 1.37 7.54 -2.39 -0.02 1.35 16 25 C 0.11 2.00 6.16 85.35 0.53 2.53 16 26 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 27 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 28 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 29 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.06 2.44 7.75 -2.39 -0.02 2.42 16 31 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.07 2.26 7.75 -2.39 -0.02 2.24 16 33 H 0.35 8.50 9.06 -89.70 -0.81 7.69 16 34 H 0.35 10.49 8.58 -89.69 -0.77 9.72 16 35 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 36 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.10 0.76 7.58 -2.39 -0.02 0.74 16 38 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 40 H 0.10 0.89 7.51 -2.39 -0.02 0.87 16 41 H 0.09 1.52 7.02 -2.39 -0.02 1.50 16 42 H 0.08 1.48 8.12 -2.39 -0.02 1.46 16 Total: -1.00 -71.30 336.16 0.62 -70.69 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -0.57 Total: 21.79 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: 3.16 Total: -17.66 kcal Atomic # 7 Polarization: -96.06 SS G_CDS: -3.95 Total: -100.01 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.05 Total: -21.63 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -71.30 0.62 -70.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688318335.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.048 kcal (2) G-P(sol) polarization free energy of solvation -71.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds