Wall clock time and date at job start Mon Mar 30 2020 05:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.63971 * 2 1 4 4 C 1.34777 * 119.99862 * 300.41719 * 3 2 1 5 5 O 1.21277 * 120.00027 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99986 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.47087 * 40.00373 * 6 4 3 8 8 N 1.46905 * 109.47121 * 160.00176 * 6 4 3 9 9 C 1.52998 * 109.47064 * 280.00094 * 6 4 3 10 10 C 1.53004 * 109.47139 * 174.99796 * 9 6 4 11 11 C 1.50698 * 109.47137 * 179.97438 * 10 9 6 12 12 H 1.08002 * 120.00164 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00019 * 180.02562 * 11 10 9 14 14 N 1.31520 * 120.00123 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00122 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46928 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.47106 * 120.00041 * 15 13 11 18 18 H 1.48497 * 109.46782 * 239.99781 * 15 13 11 19 19 C 1.53020 * 109.81833 * 239.46740 * 2 1 3 20 20 C 1.50069 * 110.14691 * 190.77423 * 19 2 1 21 21 C 1.29435 * 124.07665 * 17.13942 * 20 19 2 22 22 C 1.50073 * 124.07551 * 359.52158 * 21 20 19 23 23 C 1.53023 * 110.14412 * 17.13515 * 22 21 20 24 24 H 1.09001 * 109.47096 * 60.00012 * 1 2 3 25 25 H 1.08995 * 109.47069 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47271 * 300.00162 * 1 2 3 27 27 H 0.96998 * 120.00427 * 120.42244 * 3 2 1 28 28 H 1.00901 * 110.99869 * 60.00289 * 8 6 4 29 29 H 1.00896 * 110.99543 * 183.95412 * 8 6 4 30 30 H 1.08995 * 109.47368 * 294.99520 * 9 6 4 31 31 H 1.09001 * 109.47446 * 54.99927 * 9 6 4 32 32 H 1.08994 * 109.47287 * 300.00153 * 10 9 6 33 33 H 1.09004 * 109.46568 * 60.00209 * 10 9 6 34 34 H 0.96998 * 120.00540 * 179.97438 * 14 13 11 35 35 H 1.09003 * 109.36323 * 310.98732 * 19 2 1 36 36 H 1.09006 * 109.35892 * 70.57225 * 19 2 1 37 37 H 1.08007 * 117.96081 * 197.15158 * 20 19 2 38 38 H 1.07996 * 117.96287 * 179.50601 * 21 20 19 39 39 H 1.09003 * 109.35783 * 256.93063 * 22 21 20 40 40 H 1.09000 * 109.24415 * 137.27143 * 22 21 20 41 41 H 1.08996 * 109.63890 * 190.87606 * 23 22 21 42 42 H 1.09005 * 109.64169 * 70.25066 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0224 1.3798 0.0000 4 6 1.6923 2.2131 -1.0066 5 8 0.9873 1.8208 -1.9120 6 6 2.1993 3.6322 -1.0069 7 1 3.2334 3.6487 -0.6628 8 7 2.1277 4.1775 -2.3691 9 6 1.3369 4.4820 -0.0715 10 6 1.9254 5.8911 0.0251 11 6 1.0756 6.7283 0.9459 12 1 0.2033 6.2983 1.4157 13 6 1.4117 8.0432 1.1888 14 7 2.4737 8.5670 0.6164 15 14 0.3588 9.0809 2.3308 16 1 -0.7703 8.2632 2.8423 17 1 1.1840 9.5546 3.4709 18 1 -0.1746 10.2499 1.5864 19 6 2.0488 -0.7313 -1.2400 20 6 3.5261 -0.9668 -1.1208 21 6 4.1845 -0.8956 -0.0087 22 6 3.5643 -0.5574 1.3154 23 6 2.0456 -0.7314 1.2458 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 2.5860 1.6937 0.7243 28 1 1.1784 4.1730 -2.7110 29 1 2.5218 5.1055 -2.4082 30 1 0.3218 4.5385 -0.4643 31 1 1.3184 4.0274 0.9190 32 1 2.9405 5.8347 0.4179 33 1 1.9437 6.3458 -0.9654 34 1 2.7100 9.4922 0.7869 35 1 1.5368 -1.6889 -1.3354 36 1 1.8495 -0.1276 -2.1254 37 1 4.0741 -1.2108 -2.0190 38 1 5.2461 -1.0920 -0.0353 39 1 3.7982 0.4762 1.5705 40 1 3.9691 -1.2191 2.0812 41 1 1.5867 -0.3045 2.1375 42 1 1.8011 -1.7914 1.1759 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691541162.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:42 Heat of formation + Delta-G solvation = -65.134585 kcal Electronic energy + Delta-G solvation = -20912.182839 eV Core-core repulsion = 17890.373374 eV Total energy + Delta-G solvation = -3021.809465 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.60292 -39.26178 -36.97604 -34.90827 -34.82761 -32.32470 -31.75437 -31.65896 -28.13585 -27.52693 -25.72622 -24.12079 -22.72111 -21.65705 -20.95624 -18.92199 -18.81613 -18.11112 -16.94974 -16.56056 -16.25278 -16.04075 -15.85540 -15.41604 -15.01348 -14.75281 -14.65482 -14.60133 -14.03283 -13.74777 -13.51315 -13.43670 -13.25526 -12.97112 -12.89107 -12.77902 -12.58140 -12.47722 -12.32419 -11.80779 -11.70867 -11.34860 -11.27228 -11.24336 -10.57001 -10.46003 -9.97013 -9.80472 -9.60176 -8.21612 -6.32098 1.38617 1.40223 1.44479 1.52087 1.72788 2.21997 2.40168 3.12131 3.60107 3.76057 3.80195 3.88299 3.99276 4.14492 4.26579 4.27141 4.43473 4.47679 4.57128 4.67492 4.72677 4.78836 4.84776 4.87244 4.93000 5.06115 5.09215 5.13719 5.23741 5.28973 5.35618 5.46641 5.65335 5.72221 5.78951 5.80652 6.09269 6.10570 6.21288 6.48529 6.66245 6.83665 7.35964 7.37271 8.89430 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.026562 B = 0.004201 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.874624 B = 6664.140772 C = 6855.760868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.174 3.826 3 N -0.709 5.709 4 C 0.530 3.470 5 O -0.561 6.561 6 C 0.079 3.921 7 H 0.102 0.898 8 N -0.829 5.829 9 C -0.118 4.118 10 C 0.030 3.970 11 C -0.544 4.544 12 H 0.055 0.945 13 C 0.006 3.994 14 N -0.928 5.928 15 Si 0.959 3.041 16 H -0.265 1.265 17 H -0.277 1.277 18 H -0.280 1.280 19 C -0.101 4.101 20 C -0.163 4.163 21 C -0.157 4.157 22 C -0.094 4.094 23 C -0.116 4.116 24 H 0.049 0.951 25 H 0.081 0.919 26 H 0.057 0.943 27 H 0.407 0.593 28 H 0.343 0.657 29 H 0.350 0.650 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.001 0.999 33 H 0.001 0.999 34 H 0.264 0.736 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.435 -20.190 2.301 20.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.089 3.911 3 N -0.362 5.362 4 C 0.317 3.683 5 O -0.439 6.439 6 C -0.036 4.036 7 H 0.120 0.880 8 N -0.360 5.360 9 C -0.158 4.158 10 C -0.007 4.007 11 C -0.582 4.582 12 H 0.073 0.927 13 C -0.193 4.193 14 N -0.568 5.568 15 Si 0.784 3.216 16 H -0.189 1.189 17 H -0.202 1.202 18 H -0.206 1.206 19 C -0.139 4.139 20 C -0.181 4.181 21 C -0.175 4.175 22 C -0.130 4.130 23 C -0.153 4.153 24 H 0.068 0.932 25 H 0.100 0.900 26 H 0.076 0.924 27 H 0.244 0.756 28 H 0.156 0.844 29 H 0.165 0.835 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.116 0.884 38 H 0.129 0.871 39 H 0.094 0.906 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.512 -20.952 1.438 21.056 hybrid contribution -0.627 1.916 0.879 2.199 sum 0.885 -19.036 2.317 19.197 Atomic orbital electron populations 1.22169 0.94497 1.03014 1.02215 1.20442 0.93646 0.80578 0.96446 1.46042 1.53143 1.11713 1.25305 1.20516 0.79346 0.87140 0.81330 1.90558 1.38667 1.77604 1.37112 1.21419 1.00797 0.91008 0.90424 0.88049 1.58758 1.26918 1.29849 1.20516 1.22101 0.98105 0.96645 0.98959 1.18972 0.95165 0.91028 0.95582 1.21647 1.11498 0.96883 1.28125 0.92712 1.25865 0.96411 0.99333 0.97663 1.70071 1.27071 1.14678 1.44939 0.85486 0.78904 0.78514 0.78674 1.18944 1.20218 1.20589 1.20825 0.93935 1.00525 0.98611 1.22031 0.95890 1.01899 0.98266 1.22171 0.99957 1.00648 0.94683 1.20510 0.94480 1.02417 0.95633 1.21918 0.95876 1.01526 0.96028 0.93151 0.90010 0.92391 0.75634 0.84364 0.83496 0.93819 0.91675 0.98091 0.98065 0.92739 0.89231 0.91907 0.88416 0.87137 0.90640 0.88730 0.89767 0.88910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 8.42 71.98 0.61 -3.03 16 2 C 0.17 3.72 0.67 3.74 0.00 3.72 16 3 N -0.71 -17.61 4.59 -422.30 -1.94 -19.54 16 4 C 0.53 17.07 6.47 87.66 0.57 17.64 16 5 O -0.56 -20.97 12.50 -3.02 -0.04 -21.01 16 6 C 0.08 2.69 3.21 44.17 0.14 2.83 16 7 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 8 N -0.83 -29.25 8.94 -171.79 -1.54 -30.79 16 9 C -0.12 -4.64 4.78 30.59 0.15 -4.50 16 10 C 0.03 1.47 4.74 29.85 0.14 1.61 16 11 C -0.54 -29.92 9.11 25.60 0.23 -29.69 16 12 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 13 C 0.01 0.32 5.46 84.65 0.46 0.78 16 14 N -0.93 -54.53 13.29 21.45 0.28 -54.24 16 15 Si 0.96 43.35 29.54 68.60 2.03 45.38 16 16 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 17 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 19 C -0.10 -2.32 4.83 29.66 0.14 -2.18 16 20 C -0.16 -3.39 9.68 27.05 0.26 -3.13 16 21 C -0.16 -2.74 9.74 27.05 0.26 -2.48 16 22 C -0.09 -1.33 5.67 29.66 0.17 -1.16 16 23 C -0.12 -1.72 5.01 30.73 0.15 -1.57 16 24 H 0.05 1.47 6.15 -2.39 -0.01 1.46 16 25 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.41 8.71 6.94 -92.71 -0.64 8.06 16 28 H 0.34 12.32 8.58 -89.69 -0.77 11.55 16 29 H 0.35 12.58 7.55 -89.70 -0.68 11.91 16 30 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 33 H 0.00 0.06 6.87 -2.39 -0.02 0.04 16 34 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 35 H 0.09 1.76 8.11 -2.39 -0.02 1.74 16 36 H 0.06 1.89 6.05 -2.38 -0.01 1.87 16 37 H 0.10 2.01 8.06 -2.91 -0.02 1.99 16 38 H 0.11 1.70 8.06 -2.91 -0.02 1.68 16 39 H 0.08 1.08 6.78 -2.39 -0.02 1.07 16 40 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.09 1.16 8.12 -2.38 -0.02 1.14 16 Total: -1.00 -64.93 330.39 1.02 -63.90 By element: Atomic # 1 Polarization: 38.53 SS G_CDS: -1.07 Total: 37.47 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: 3.29 Total: -21.16 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -3.19 Total: -104.58 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.04 Total: -21.01 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -64.93 1.02 -63.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691541162.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.230 kcal (2) G-P(sol) polarization free energy of solvation -64.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds