Wall clock time and date at job start Mon Mar 30 2020 05:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86801 * 119.99738 * 2 1 4 4 H 1.48503 * 109.46952 * 239.99886 * 3 2 1 5 5 H 1.48497 * 109.47273 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46895 * 120.00176 * 3 2 1 7 7 C 1.37872 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99558 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00375 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47057 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47202 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47221 * 305.00357 * 11 10 9 13 13 N 1.46901 * 109.47027 * 64.99765 * 11 10 9 14 14 C 1.50700 * 109.47432 * 184.99824 * 11 10 9 15 15 O 1.21283 * 119.99803 * 259.99855 * 14 11 10 16 16 N 1.34777 * 119.99675 * 80.27730 * 14 11 10 17 17 C 1.47021 * 125.65024 * 359.41182 * 16 14 11 18 18 C 1.54337 * 107.26261 * 178.85492 * 17 16 14 19 19 C 1.55155 * 103.02070 * 338.14065 * 18 17 16 20 20 H 1.08998 * 111.00779 * 277.23178 * 19 18 17 21 21 C 1.52996 * 111.03440 * 153.40086 * 19 18 17 22 22 C 1.52996 * 117.50123 * 136.40864 * 21 19 18 23 23 C 1.52999 * 117.50306 * 67.78261 * 21 19 18 24 24 C 1.47426 * 125.64505 * 179.72939 * 16 14 11 25 25 H 0.96999 * 119.99800 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47169 * 60.00188 * 9 7 2 27 27 H 1.08999 * 109.47275 * 300.00248 * 9 7 2 28 28 H 1.08993 * 109.47652 * 60.00299 * 10 9 7 29 29 H 1.09001 * 109.47356 * 299.99400 * 10 9 7 30 30 H 1.00901 * 111.00196 * 296.04395 * 13 11 10 31 31 H 1.00895 * 110.99940 * 60.00250 * 13 11 10 32 32 H 1.08996 * 109.88140 * 298.39855 * 17 16 14 33 33 H 1.09001 * 109.87951 * 59.56582 * 17 16 14 34 34 H 1.09005 * 110.84402 * 219.67330 * 18 17 16 35 35 H 1.08992 * 110.66684 * 96.52861 * 18 17 16 36 36 H 1.09007 * 115.54609 * 282.11536 * 21 19 18 37 37 H 1.08996 * 117.49889 * 359.97438 * 22 21 19 38 38 H 1.08999 * 117.50113 * 145.01876 * 22 21 19 39 39 H 1.09005 * 117.50075 * 214.98044 * 23 21 19 40 40 H 1.08998 * 117.50007 * 0.02562 * 23 21 19 41 41 H 1.09003 * 110.36374 * 322.92215 * 24 16 14 42 42 H 1.09000 * 110.37185 * 85.13705 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 1 0.7879 -5.0073 0.8404 13 7 0.7290 -5.1181 -1.2567 14 6 2.4549 -6.1298 0.1226 15 8 2.7870 -6.7531 -0.8634 16 7 2.9531 -6.4628 1.3299 17 6 2.6420 -5.7911 2.6001 18 6 3.4164 -6.5312 3.7112 19 6 3.6834 -7.9244 3.0827 20 1 2.8188 -8.5777 3.1991 21 6 4.9364 -8.5661 3.6818 22 6 4.8638 -10.0497 4.0488 23 6 4.8801 -8.9888 5.1512 24 6 3.9053 -7.5568 1.5943 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 2.8720 -3.6043 0.8894 29 1 2.8719 -3.6043 -0.8906 30 1 0.0242 -4.4001 -1.3330 31 1 1.3491 -5.1021 -2.0525 32 1 2.9588 -4.7491 2.5557 33 1 1.5713 -5.8472 2.7966 34 1 2.8089 -6.6242 4.6115 35 1 4.3542 -6.0213 3.9315 36 1 5.8857 -8.1868 3.3033 37 1 3.9232 -10.5684 3.8638 38 1 5.7653 -10.6468 3.9116 39 1 5.7923 -8.8880 5.7393 40 1 3.9502 -8.8101 5.6910 41 1 3.6868 -8.4126 0.9556 42 1 4.9283 -7.2164 1.4344 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691544218.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:48 Heat of formation + Delta-G solvation = -28.270426 kcal Electronic energy + Delta-G solvation = -20349.217188 eV Core-core repulsion = 17329.006273 eV Total energy + Delta-G solvation = -3020.210915 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.13311 -38.38929 -36.31489 -35.42298 -32.84517 -31.35284 -29.87746 -29.22373 -26.59637 -24.56352 -22.94820 -22.63360 -22.13732 -20.43357 -20.21669 -18.84892 -17.40561 -16.30113 -16.26190 -15.88429 -15.21815 -14.61947 -14.41661 -14.32991 -13.86323 -13.72051 -13.33971 -13.25465 -12.73619 -12.51997 -12.27561 -11.99136 -11.85880 -11.77096 -11.65741 -11.40280 -11.04340 -10.93242 -10.84729 -10.70249 -10.51953 -10.11352 -9.94981 -9.88100 -9.28193 -9.18965 -8.52174 -8.43315 -8.15948 -6.08374 -4.11611 2.95785 3.09129 3.28380 3.33243 3.35724 3.45574 4.26709 4.37927 4.40031 4.47824 4.70553 4.78464 4.95942 5.05471 5.14777 5.22215 5.27691 5.28622 5.32604 5.36185 5.56250 5.61152 5.63750 5.75539 5.78364 5.80359 5.82741 5.86815 5.91490 6.11920 6.31713 6.39358 6.55885 6.88428 7.45804 7.52536 7.62484 7.72377 7.88634 7.93102 8.31379 8.46691 8.94100 9.53209 11.02495 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024470 B = 0.003904 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.968875 B = 7170.818190 C = 7900.112218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.026 3.974 10 C -0.137 4.137 11 C 0.079 3.921 12 H 0.095 0.905 13 N -0.831 5.831 14 C 0.541 3.459 15 O -0.540 6.540 16 N -0.622 5.622 17 C 0.095 3.905 18 C -0.122 4.122 19 C -0.071 4.071 20 H 0.084 0.916 21 C -0.141 4.141 22 C -0.180 4.180 23 C -0.176 4.176 24 C 0.115 3.885 25 H 0.262 0.738 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.354 0.646 31 H 0.345 0.655 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.197 -16.053 10.096 20.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.177 4.177 11 C -0.036 4.036 12 H 0.113 0.887 13 N -0.363 5.363 14 C 0.330 3.670 15 O -0.415 6.415 16 N -0.358 5.358 17 C -0.028 4.028 18 C -0.160 4.160 19 C -0.090 4.090 20 H 0.103 0.897 21 C -0.160 4.160 22 C -0.217 4.217 23 C -0.213 4.213 24 C -0.008 4.008 25 H 0.072 0.928 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.169 0.831 31 H 0.158 0.842 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.125 0.875 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.094 0.906 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.930 -16.948 9.740 20.740 hybrid contribution 0.875 1.985 -0.086 2.171 sum 7.805 -14.964 9.654 19.443 Atomic orbital electron populations 1.69944 1.06010 1.26888 1.50370 1.25009 0.94870 0.99274 0.95116 0.86643 0.79595 0.83023 0.78671 1.20220 1.21210 1.20213 1.21146 0.92984 0.90915 1.51226 0.92787 1.19087 0.93678 0.91046 0.97332 1.22376 0.99914 0.93943 1.01441 1.21441 0.94542 0.92216 0.95415 0.88697 1.58744 1.18491 1.55887 1.03220 1.20611 0.80878 0.84492 0.80976 1.90633 1.60712 1.53906 1.36296 1.48460 1.46403 1.33783 1.07179 1.22146 1.00176 0.97540 0.82895 1.22652 1.01042 0.94815 0.97520 1.21931 0.96629 0.96345 0.94105 0.89745 1.22154 0.98910 0.97045 0.97880 1.23016 1.03282 0.91680 1.03762 1.22922 1.03292 1.03825 0.91306 1.22146 0.93137 0.90453 0.95054 0.92821 0.96407 0.96354 0.92526 0.92747 0.83052 0.84152 0.90350 0.91157 0.90019 0.90255 0.87485 0.88749 0.88846 0.88811 0.88707 0.90589 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.05 13.29 55.43 0.74 -25.32 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 9 C 0.03 0.63 4.74 -27.89 -0.13 0.50 16 10 C -0.14 -2.77 4.77 -26.73 -0.13 -2.89 16 11 C 0.08 1.42 2.62 -68.86 -0.18 1.23 16 12 H 0.10 1.63 7.45 -51.93 -0.39 1.24 16 13 N -0.83 -14.99 8.94 -5.65 -0.05 -15.04 16 14 C 0.54 9.71 7.10 -10.98 -0.08 9.64 16 15 O -0.54 -11.27 16.51 5.55 0.09 -11.18 16 16 N -0.62 -9.01 3.33 -170.51 -0.57 -9.58 16 17 C 0.10 1.13 6.20 -3.06 -0.02 1.11 16 18 C -0.12 -1.09 6.32 -24.89 -0.16 -1.25 16 19 C -0.07 -0.64 3.17 -88.48 -0.28 -0.92 16 20 H 0.08 0.77 8.01 -51.93 -0.42 0.35 16 21 C -0.14 -1.09 5.16 -90.62 -0.47 -1.56 16 22 C -0.18 -1.27 10.20 -26.73 -0.27 -1.54 16 23 C -0.18 -1.19 10.14 -26.73 -0.27 -1.46 16 24 C 0.11 1.39 6.37 -2.53 -0.02 1.38 16 25 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 1.10 6.66 -51.93 -0.35 0.76 16 29 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.35 6.31 7.55 -39.29 -0.30 6.02 16 31 H 0.35 6.29 8.58 -39.29 -0.34 5.96 16 32 H 0.08 1.00 6.76 -51.93 -0.35 0.65 16 33 H 0.07 0.80 7.83 -51.93 -0.41 0.39 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.68 8.04 -51.93 -0.42 0.27 16 36 H 0.11 0.82 8.01 -51.93 -0.42 0.41 16 37 H 0.09 0.65 8.11 -51.93 -0.42 0.23 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.99 8.04 -51.93 -0.42 0.58 16 42 H 0.07 0.78 7.94 -51.93 -0.41 0.36 16 LS Contribution 339.01 15.07 5.11 5.11 Total: -1.00 -31.35 339.01 -9.17 -40.52 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -7.06 Total: 8.20 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -2.41 Total: -8.98 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: 0.12 Total: -49.93 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.35 -9.17 -40.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691544218.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.249 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds