Wall clock time and date at job start Mon Mar 30 2020 05:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86801 * 119.99738 * 2 1 4 4 H 1.48503 * 109.46952 * 239.99886 * 3 2 1 5 5 H 1.48497 * 109.47273 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46895 * 120.00176 * 3 2 1 7 7 C 1.37872 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99558 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00375 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47057 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47202 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47221 * 305.00357 * 11 10 9 13 13 N 1.46901 * 109.47027 * 64.99765 * 11 10 9 14 14 C 1.50700 * 109.47432 * 184.99824 * 11 10 9 15 15 O 1.21283 * 119.99803 * 259.99855 * 14 11 10 16 16 N 1.34777 * 119.99675 * 80.27730 * 14 11 10 17 17 C 1.47021 * 125.65024 * 359.41182 * 16 14 11 18 18 C 1.54337 * 107.26261 * 178.85492 * 17 16 14 19 19 C 1.55155 * 103.02070 * 338.14065 * 18 17 16 20 20 H 1.08998 * 111.00779 * 277.23178 * 19 18 17 21 21 C 1.52996 * 111.03440 * 153.40086 * 19 18 17 22 22 C 1.52996 * 117.50123 * 136.40864 * 21 19 18 23 23 C 1.52999 * 117.50306 * 67.78261 * 21 19 18 24 24 C 1.47426 * 125.64505 * 179.72939 * 16 14 11 25 25 H 0.96999 * 119.99800 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47169 * 60.00188 * 9 7 2 27 27 H 1.08999 * 109.47275 * 300.00248 * 9 7 2 28 28 H 1.08993 * 109.47652 * 60.00299 * 10 9 7 29 29 H 1.09001 * 109.47356 * 299.99400 * 10 9 7 30 30 H 1.00901 * 111.00196 * 296.04395 * 13 11 10 31 31 H 1.00895 * 110.99940 * 60.00250 * 13 11 10 32 32 H 1.08996 * 109.88140 * 298.39855 * 17 16 14 33 33 H 1.09001 * 109.87951 * 59.56582 * 17 16 14 34 34 H 1.09005 * 110.84402 * 219.67330 * 18 17 16 35 35 H 1.08992 * 110.66684 * 96.52861 * 18 17 16 36 36 H 1.09007 * 115.54609 * 282.11536 * 21 19 18 37 37 H 1.08996 * 117.49889 * 359.97438 * 22 21 19 38 38 H 1.08999 * 117.50113 * 145.01876 * 22 21 19 39 39 H 1.09005 * 117.50075 * 214.98044 * 23 21 19 40 40 H 1.08998 * 117.50007 * 0.02562 * 23 21 19 41 41 H 1.09003 * 110.36374 * 322.92215 * 24 16 14 42 42 H 1.09000 * 110.37185 * 85.13705 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 1 0.7879 -5.0073 0.8404 13 7 0.7290 -5.1181 -1.2567 14 6 2.4549 -6.1298 0.1226 15 8 2.7870 -6.7531 -0.8634 16 7 2.9531 -6.4628 1.3299 17 6 2.6420 -5.7911 2.6001 18 6 3.4164 -6.5312 3.7112 19 6 3.6834 -7.9244 3.0827 20 1 2.8188 -8.5777 3.1991 21 6 4.9364 -8.5661 3.6818 22 6 4.8638 -10.0497 4.0488 23 6 4.8801 -8.9888 5.1512 24 6 3.9053 -7.5568 1.5943 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 2.8720 -3.6043 0.8894 29 1 2.8719 -3.6043 -0.8906 30 1 0.0242 -4.4001 -1.3330 31 1 1.3491 -5.1021 -2.0525 32 1 2.9588 -4.7491 2.5557 33 1 1.5713 -5.8472 2.7966 34 1 2.8089 -6.6242 4.6115 35 1 4.3542 -6.0213 3.9315 36 1 5.8857 -8.1868 3.3033 37 1 3.9232 -10.5684 3.8638 38 1 5.7653 -10.6468 3.9116 39 1 5.7923 -8.8880 5.7393 40 1 3.9502 -8.8101 5.6910 41 1 3.6868 -8.4126 0.9556 42 1 4.9283 -7.2164 1.4344 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691544218.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:47 Heat of formation + Delta-G solvation = -48.160719 kcal Electronic energy + Delta-G solvation = -20350.079696 eV Core-core repulsion = 17329.006273 eV Total energy + Delta-G solvation = -3021.073423 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.32979 -39.37672 -37.22899 -37.03451 -34.85435 -32.37292 -31.71343 -30.17343 -28.19923 -26.16096 -24.20458 -23.39133 -22.84425 -22.11814 -20.97889 -20.11271 -18.85901 -18.22150 -17.33557 -16.63286 -16.62808 -16.38660 -15.75168 -15.65523 -15.18960 -14.82803 -14.60586 -14.30963 -14.20117 -13.85405 -13.64076 -13.43537 -13.06382 -12.91381 -12.67164 -12.59899 -12.51815 -12.32612 -12.13853 -11.82011 -11.72756 -11.57795 -11.33145 -11.12151 -10.78663 -10.69769 -10.56092 -9.76405 -9.63289 -8.21769 -6.32568 1.39853 1.41550 1.49431 1.54036 1.90440 2.39777 2.87065 3.11669 3.43753 3.59449 3.65274 3.72582 3.86535 4.04680 4.11114 4.20167 4.24299 4.28948 4.30381 4.52256 4.57935 4.60375 4.68783 4.78845 4.86406 4.88280 4.96292 5.06368 5.07177 5.12576 5.18961 5.33194 5.35909 5.44441 5.44882 5.63206 5.79068 6.02767 6.20025 6.42699 6.44645 6.82104 7.09483 7.36568 8.88851 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.024470 B = 0.003904 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.968875 B = 7170.818190 C = 7900.112218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.959 3.041 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.054 0.946 9 C 0.033 3.967 10 C -0.119 4.119 11 C 0.086 3.914 12 H 0.105 0.895 13 N -0.830 5.830 14 C 0.537 3.463 15 O -0.576 6.576 16 N -0.619 5.619 17 C 0.086 3.914 18 C -0.112 4.112 19 C -0.057 4.057 20 H 0.087 0.913 21 C -0.150 4.150 22 C -0.183 4.183 23 C -0.167 4.167 24 C 0.109 3.891 25 H 0.264 0.736 26 H 0.002 0.998 27 H 0.003 0.997 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.354 0.646 31 H 0.344 0.656 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.063 0.937 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.231 -16.242 11.852 21.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.784 3.216 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.072 0.928 9 C -0.004 4.004 10 C -0.159 4.159 11 C -0.029 4.029 12 H 0.123 0.877 13 N -0.362 5.362 14 C 0.326 3.674 15 O -0.455 6.455 16 N -0.352 5.352 17 C -0.036 4.036 18 C -0.150 4.150 19 C -0.076 4.076 20 H 0.105 0.895 21 C -0.168 4.168 22 C -0.220 4.220 23 C -0.204 4.204 24 C -0.014 4.014 25 H 0.073 0.927 26 H 0.020 0.980 27 H 0.021 0.979 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.169 0.831 31 H 0.157 0.843 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.123 0.877 35 H 0.104 0.896 36 H 0.125 0.875 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.081 0.919 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.979 -17.150 11.540 22.158 hybrid contribution 0.546 2.008 -0.609 2.168 sum 8.525 -15.142 10.931 20.529 Atomic orbital electron populations 1.70057 1.07489 1.27882 1.51151 1.25863 0.95737 1.02956 0.94639 0.85588 0.78383 0.78562 0.79056 1.19703 1.20746 1.19096 1.21575 0.93324 0.92431 1.51178 0.92764 1.18936 0.93896 0.91836 0.95729 1.22113 0.98861 0.93708 1.01193 1.21346 0.94545 0.91266 0.95713 0.87700 1.58755 1.18434 1.55707 1.03298 1.20486 0.80939 0.84321 0.81668 1.90610 1.62041 1.55147 1.37749 1.48519 1.45665 1.34023 1.07019 1.22386 1.01256 0.97344 0.82596 1.22659 1.01300 0.94010 0.97040 1.21831 0.97501 0.96617 0.91670 0.89487 1.22083 0.98106 0.97662 0.98985 1.23090 1.03640 0.91397 1.03870 1.22996 1.04034 1.02697 0.90648 1.22341 0.92601 0.89253 0.97161 0.92672 0.97970 0.97880 0.91730 0.93927 0.83112 0.84319 0.91212 0.90414 0.87726 0.89570 0.87475 0.88749 0.88255 0.87935 0.88117 0.91867 0.91403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.31 13.29 21.45 0.28 -54.03 16 2 C 0.01 0.37 5.46 84.65 0.46 0.84 16 3 Si 0.96 43.30 29.54 68.60 2.03 45.32 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.55 -30.23 9.11 25.60 0.23 -29.99 16 8 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 9 C 0.03 1.65 4.74 29.85 0.14 1.79 16 10 C -0.12 -4.83 4.77 30.59 0.15 -4.68 16 11 C 0.09 3.11 2.62 44.17 0.12 3.22 16 12 H 0.11 3.55 7.45 -2.39 -0.02 3.53 16 13 N -0.83 -30.31 8.94 -171.79 -1.54 -31.85 16 14 C 0.54 19.26 7.10 87.66 0.62 19.88 16 15 O -0.58 -24.37 16.51 -3.04 -0.05 -24.42 16 16 N -0.62 -17.47 3.33 -811.77 -2.70 -20.17 16 17 C 0.09 1.91 6.20 86.73 0.54 2.45 16 18 C -0.11 -1.71 6.32 31.79 0.20 -1.51 16 19 C -0.06 -0.92 3.17 -9.40 -0.03 -0.95 16 20 H 0.09 1.39 8.01 -2.39 -0.02 1.37 16 21 C -0.15 -1.98 5.16 -10.80 -0.06 -2.04 16 22 C -0.18 -2.17 10.20 30.59 0.31 -1.86 16 23 C -0.17 -1.77 10.14 30.59 0.31 -1.46 16 24 C 0.11 2.54 6.37 86.85 0.55 3.09 16 25 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 26 H 0.00 0.11 6.87 -2.39 -0.02 0.09 16 27 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 28 H 0.06 2.49 6.66 -2.39 -0.02 2.48 16 29 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.35 12.85 7.55 -89.69 -0.68 12.18 16 31 H 0.34 12.79 8.58 -89.70 -0.77 12.02 16 32 H 0.07 1.69 6.76 -2.39 -0.02 1.68 16 33 H 0.08 1.63 7.83 -2.39 -0.02 1.61 16 34 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.09 1.24 8.04 -2.39 -0.02 1.22 16 36 H 0.11 1.44 8.01 -2.38 -0.02 1.42 16 37 H 0.09 1.12 8.11 -2.39 -0.02 1.10 16 38 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 40 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.06 1.65 8.04 -2.39 -0.02 1.63 16 42 H 0.07 1.56 7.94 -2.39 -0.02 1.54 16 Total: -1.00 -66.66 339.01 1.14 -65.52 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: -0.44 Total: 30.83 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: 3.55 Total: -11.21 kcal Atomic # 7 Polarization: -102.09 SS G_CDS: -3.95 Total: -106.04 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.05 Total: -24.42 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -66.66 1.14 -65.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691544218.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.360 kcal (2) G-P(sol) polarization free energy of solvation -66.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds