Wall clock time and date at job start Mon Mar 30 2020 04:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99825 * 2 1 4 4 H 1.48496 * 109.47348 * 269.99769 * 3 2 1 5 5 H 1.48495 * 109.47315 * 30.00235 * 3 2 1 6 6 H 1.48506 * 109.46831 * 149.99768 * 3 2 1 7 7 C 1.37873 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00258 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99890 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47169 * 179.97438 * 9 7 2 11 11 C 1.52991 * 109.47051 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.47898 * 55.00454 * 11 10 9 13 13 N 1.46898 * 109.47439 * 295.00196 * 11 10 9 14 14 C 1.50707 * 109.47191 * 175.00728 * 11 10 9 15 15 O 1.21277 * 120.00461 * 99.99939 * 14 11 10 16 16 N 1.34776 * 119.99503 * 280.00015 * 14 11 10 17 17 C 1.47436 * 125.61969 * 0.02562 * 16 14 11 18 18 C 1.55780 * 105.38624 * 203.40122 * 17 16 14 19 19 C 1.55266 * 101.24752 * 323.98362 * 18 17 16 20 20 H 1.09002 * 113.27669 * 157.72052 * 19 18 17 21 21 C 1.54037 * 108.00834 * 283.93045 * 19 18 17 22 22 C 1.53565 * 106.21228 * 137.88450 * 21 19 18 23 23 C 1.53503 * 107.20457 * 341.95908 * 22 21 19 24 24 C 1.46693 * 125.61674 * 179.97438 * 16 14 11 25 25 H 1.08997 * 111.29827 * 57.82789 * 24 16 14 26 26 H 0.97000 * 120.00095 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46766 * 60.00415 * 9 7 2 28 28 H 1.08992 * 109.47382 * 300.00494 * 9 7 2 29 29 H 1.09006 * 109.46808 * 60.00210 * 10 9 7 30 30 H 1.08998 * 109.47323 * 300.00402 * 10 9 7 31 31 H 1.00904 * 111.00096 * 300.00511 * 13 11 10 32 32 H 1.00904 * 110.99857 * 63.95682 * 13 11 10 33 33 H 1.09000 * 110.36767 * 322.89563 * 17 16 14 34 34 H 1.09003 * 110.36681 * 85.10510 * 17 16 14 35 35 H 1.09000 * 111.73630 * 205.79210 * 18 17 16 36 36 H 1.09002 * 110.63375 * 81.70030 * 18 17 16 37 37 H 1.08999 * 110.10729 * 257.07053 * 21 19 18 38 38 H 1.09006 * 110.10829 * 18.63953 * 21 19 18 39 39 H 1.09002 * 109.89002 * 101.35061 * 22 21 19 40 40 H 1.08995 * 109.89377 * 222.56009 * 22 21 19 41 41 H 1.08994 * 109.86072 * 120.08493 * 23 22 21 42 42 H 1.09002 * 109.86037 * 241.17314 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4803 -4.9870 -0.0025 12 1 0.7878 -5.0065 -0.8440 13 7 0.7290 -5.1194 1.2529 14 6 2.4548 -6.1298 -0.1274 15 8 2.7870 -6.7540 0.8579 16 7 2.9572 -6.4580 -1.3342 17 6 2.6408 -5.7859 -2.6077 18 6 2.9423 -6.8379 -3.7163 19 6 4.1838 -7.5565 -3.1223 20 1 4.3362 -8.5575 -3.5259 21 6 5.4032 -6.6343 -3.3103 22 6 6.2013 -6.7064 -2.0003 23 6 5.2598 -7.2668 -0.9252 24 6 3.9099 -7.5421 -1.5968 25 1 3.5170 -8.5033 -1.2655 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5567 -0.8904 28 1 0.6247 -2.5571 0.8896 29 1 2.8726 -3.6047 0.8878 30 1 2.8713 -3.6040 -0.8922 31 1 1.3491 -5.1042 2.0488 32 1 0.0242 -4.4014 1.3300 33 1 1.5912 -5.4926 -2.6313 34 1 3.2806 -4.9143 -2.7459 35 1 3.1836 -6.3638 -4.6677 36 1 2.1069 -7.5292 -3.8272 37 1 6.0144 -6.9861 -4.1413 38 1 5.0745 -5.6113 -3.4940 39 1 7.0584 -7.3684 -2.1243 40 1 6.5378 -5.7095 -1.7157 41 1 5.6685 -8.1930 -0.5214 42 1 5.1336 -6.5362 -0.1262 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691561223.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:52 Heat of formation + Delta-G solvation = -57.012586 kcal Electronic energy + Delta-G solvation = -21158.611420 eV Core-core repulsion = 18137.154152 eV Total energy + Delta-G solvation = -3021.457269 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.65348 -38.33781 -35.42602 -34.31043 -32.83122 -31.75608 -29.87799 -28.60498 -26.95973 -26.23494 -24.04524 -22.56365 -20.93067 -20.46682 -19.83154 -18.51347 -17.46737 -16.46102 -15.98916 -15.29630 -14.90468 -14.72005 -14.45761 -14.25476 -14.23269 -13.84132 -13.44352 -13.02171 -12.74052 -12.24159 -12.10601 -11.86980 -11.78890 -11.48539 -11.36824 -11.13268 -11.02447 -10.94130 -10.86468 -10.74187 -10.67840 -10.41873 -9.96579 -9.85715 -9.26767 -9.16113 -8.49163 -8.43890 -8.15219 -6.08658 -4.11724 2.98138 3.11868 3.26495 3.33453 3.36841 4.15440 4.35391 4.39138 4.52262 4.90103 4.92591 5.02968 5.18867 5.22821 5.24659 5.27692 5.37363 5.50863 5.53286 5.56058 5.58185 5.74019 5.77361 5.80905 5.86016 5.91620 5.97031 6.12689 6.16438 6.25695 6.32117 6.50726 6.60950 6.88429 7.47045 7.52981 7.62649 7.75756 7.88505 7.93084 8.31347 8.50378 8.94165 9.53170 11.02268 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021165 B = 0.004946 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.640095 B = 5659.654088 C = 6186.666247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.025 3.975 10 C -0.136 4.136 11 C 0.078 3.922 12 H 0.095 0.905 13 N -0.831 5.831 14 C 0.541 3.459 15 O -0.537 6.537 16 N -0.612 5.612 17 C 0.098 3.902 18 C -0.128 4.128 19 C -0.101 4.101 20 H 0.098 0.902 21 C -0.119 4.119 22 C -0.121 4.121 23 C -0.130 4.130 24 C 0.140 3.860 25 H 0.075 0.925 26 H 0.261 0.739 27 H 0.018 0.982 28 H 0.018 0.982 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.345 0.655 32 H 0.354 0.646 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.796 -14.203 -8.487 18.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.175 4.175 11 C -0.037 4.037 12 H 0.112 0.888 13 N -0.363 5.363 14 C 0.331 3.669 15 O -0.413 6.413 16 N -0.347 5.347 17 C -0.025 4.025 18 C -0.166 4.166 19 C -0.119 4.119 20 H 0.116 0.884 21 C -0.156 4.156 22 C -0.159 4.159 23 C -0.169 4.169 24 C 0.036 3.964 25 H 0.093 0.907 26 H 0.071 0.929 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.158 0.842 32 H 0.169 0.831 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.545 -15.102 -8.124 18.735 hybrid contribution 0.850 2.013 0.148 2.190 sum 8.395 -13.089 -7.976 17.476 Atomic orbital electron populations 1.69950 1.06011 1.26763 1.50489 1.25003 0.94853 0.99258 0.95134 0.86594 0.79881 0.83414 0.78143 1.20611 1.21133 1.19902 1.21175 0.92991 0.90892 1.51055 0.92773 1.19095 0.93693 0.91096 0.97304 1.22350 0.99861 0.93919 1.01399 1.21454 0.94585 0.92290 0.95357 0.88757 1.58749 1.18484 1.55856 1.03233 1.20569 0.80886 0.84444 0.81030 1.90629 1.60691 1.53664 1.36348 1.48369 1.45296 1.33908 1.07154 1.22517 1.01660 0.95694 0.82651 1.23025 0.97677 0.97967 0.97929 1.22913 0.95408 0.99627 0.93993 0.88419 1.22197 0.95839 0.99947 0.97652 1.21945 0.98132 1.01184 0.94643 1.22213 0.94341 1.01665 0.98634 1.21771 0.89417 0.90817 0.94398 0.90690 0.92886 0.96384 0.96424 0.92819 0.92592 0.84174 0.83093 0.90104 0.90982 0.89552 0.90754 0.91628 0.91068 0.92008 0.91802 0.91396 0.90873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.62 4.74 -27.88 -0.13 0.48 16 10 C -0.14 -2.73 4.77 -26.73 -0.13 -2.86 16 11 C 0.08 1.39 2.62 -68.87 -0.18 1.21 16 12 H 0.09 1.61 6.91 -51.93 -0.36 1.25 16 13 N -0.83 -14.93 8.94 -5.66 -0.05 -14.98 16 14 C 0.54 9.58 6.67 -10.98 -0.07 9.51 16 15 O -0.54 -11.01 15.93 5.56 0.09 -10.92 16 16 N -0.61 -8.78 3.06 -162.14 -0.50 -9.28 16 17 C 0.10 1.16 5.80 -2.05 -0.01 1.15 16 18 C -0.13 -1.13 6.43 -24.05 -0.15 -1.29 16 19 C -0.10 -0.92 4.16 -87.83 -0.36 -1.28 16 20 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 21 C -0.12 -1.07 6.01 -25.90 -0.16 -1.23 16 22 C -0.12 -1.24 6.78 -26.18 -0.18 -1.42 16 23 C -0.13 -1.61 6.30 -26.33 -0.17 -1.77 16 24 C 0.14 1.73 3.44 -66.64 -0.23 1.50 16 25 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 29 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.06 1.09 7.39 -51.93 -0.38 0.71 16 31 H 0.35 6.27 8.58 -39.29 -0.34 5.94 16 32 H 0.35 6.30 7.55 -39.29 -0.30 6.00 16 33 H 0.08 0.96 6.92 -51.93 -0.36 0.60 16 34 H 0.07 0.88 6.95 -51.93 -0.36 0.52 16 35 H 0.09 0.63 8.06 -51.93 -0.42 0.21 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.69 6.60 -51.93 -0.34 0.35 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 1.13 7.19 -51.93 -0.37 0.75 16 LS Contribution 326.69 15.07 4.92 4.92 Total: -1.00 -31.08 326.69 -8.94 -40.02 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -6.93 Total: 8.39 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -2.18 Total: -9.12 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: 0.19 Total: -49.55 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.08 -8.94 -40.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691561223.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.993 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds