Wall clock time and date at job start Mon Mar 30 2020 04:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99991 * 2 1 4 4 H 1.48502 * 109.47011 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46999 * 300.00027 * 3 2 1 6 6 H 1.48496 * 109.46937 * 60.00326 * 3 2 1 7 7 C 1.37871 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00204 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00232 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47491 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47494 * 179.97438 * 10 9 7 12 12 H 1.08994 * 109.46869 * 305.00292 * 11 10 9 13 13 N 1.46900 * 109.46742 * 64.99369 * 11 10 9 14 14 C 1.50699 * 109.47324 * 184.99900 * 11 10 9 15 15 O 1.21286 * 119.99566 * 259.99898 * 14 11 10 16 16 N 1.34769 * 120.00027 * 80.00427 * 14 11 10 17 17 C 1.46498 * 120.00088 * 180.02562 * 16 14 11 18 18 H 1.09000 * 115.57302 * 350.84646 * 17 16 14 19 19 C 1.49176 * 117.72532 * 135.96349 * 17 16 14 20 20 H 1.09003 * 116.23346 * 0.91923 * 19 17 16 21 21 C 1.52487 * 121.53978 * 216.79857 * 19 17 16 22 22 C 1.52874 * 110.03265 * 311.50759 * 21 19 17 23 23 C 1.53301 * 108.73970 * 303.99828 * 22 21 19 24 24 C 1.52879 * 108.58161 * 74.35081 * 23 22 21 25 25 C 1.52075 * 61.32616 * 107.53735 * 19 17 16 26 26 H 1.08990 * 117.25447 * 253.34960 * 25 19 17 27 27 H 0.96996 * 119.99908 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47054 * 60.00217 * 9 7 2 29 29 H 1.09003 * 109.47193 * 300.00504 * 9 7 2 30 30 H 1.09002 * 109.47333 * 59.99728 * 10 9 7 31 31 H 1.08998 * 109.47125 * 299.99786 * 10 9 7 32 32 H 1.00909 * 111.00023 * 60.00522 * 13 11 10 33 33 H 1.00904 * 110.99877 * 183.95469 * 13 11 10 34 34 H 0.97002 * 120.00299 * 359.97438 * 16 14 11 35 35 H 1.08998 * 110.48355 * 190.76891 * 21 19 17 36 36 H 1.08999 * 108.52744 * 71.02252 * 21 19 17 37 37 H 1.09002 * 109.61727 * 184.17623 * 22 21 19 38 38 H 1.08998 * 109.61587 * 63.81744 * 22 21 19 39 39 H 1.08997 * 109.61828 * 194.08130 * 23 22 21 40 40 H 1.08998 * 109.61975 * 314.44120 * 23 22 21 41 41 H 1.09004 * 109.35389 * 65.69118 * 24 23 22 42 42 H 1.08996 * 109.35969 * 185.26555 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4803 -4.9871 0.0001 12 1 0.7884 -5.0068 0.8421 13 7 0.7280 -5.1188 -1.2548 14 6 2.4549 -6.1298 0.1239 15 8 2.7863 -6.7536 -0.8620 16 7 2.9581 -6.4586 1.3301 17 6 3.9061 -7.5691 1.4504 18 1 4.0357 -8.1762 0.5545 19 6 5.1076 -7.3657 2.3108 20 1 5.1870 -6.3983 2.8067 21 6 6.4646 -7.9527 1.9374 22 6 6.3129 -9.4279 1.5663 23 6 5.6487 -10.1641 2.7356 24 6 4.1649 -9.7969 2.7627 25 6 3.9992 -8.2796 2.8096 26 1 3.3656 -7.9033 3.6126 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8897 30 1 2.8720 -3.6043 0.8894 31 1 2.8719 -3.6043 -0.8905 32 1 1.3476 -5.1033 -2.0511 33 1 0.1636 -5.9552 -1.2520 34 1 2.6933 -5.9595 2.1186 35 1 7.1619 -7.8612 2.7701 36 1 6.8550 -7.4044 1.0801 37 1 7.2949 -9.8594 1.3726 38 1 5.6910 -9.5192 0.6758 39 1 5.7571 -11.2401 2.5994 40 1 6.1198 -9.8644 3.6717 41 1 3.6801 -10.1858 1.8672 42 1 3.6994 -10.2386 3.6437 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691631328.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:35 Heat of formation + Delta-G solvation = -45.866295 kcal Electronic energy + Delta-G solvation = -20137.712785 eV Core-core repulsion = 17116.738856 eV Total energy + Delta-G solvation = -3020.973929 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.47662 -39.08715 -35.24573 -34.70408 -32.79952 -31.92077 -31.02253 -30.08982 -26.58519 -24.81714 -23.46440 -22.79579 -21.25758 -20.72171 -19.76900 -18.69948 -17.13712 -16.93598 -16.15531 -15.58722 -15.21780 -14.69848 -14.42484 -14.30251 -14.13587 -14.07029 -13.67766 -13.39528 -12.58436 -12.40193 -12.33077 -12.12336 -12.01365 -11.65984 -11.49058 -11.11240 -10.91515 -10.80301 -10.67741 -10.53310 -10.51840 -10.14109 -9.91999 -9.80020 -9.37585 -8.98866 -8.68753 -8.35637 -8.20922 -5.94110 -3.96231 2.69073 3.13497 3.33718 3.41320 3.45251 3.64128 4.41500 4.46043 4.50036 4.57930 4.73504 4.82267 4.88514 5.01670 5.05507 5.12631 5.25120 5.33165 5.41507 5.44450 5.52979 5.64750 5.68887 5.75158 5.82676 5.84927 5.95302 5.97968 6.02796 6.12773 6.41902 6.51264 6.65684 7.08406 7.37236 7.59405 7.76107 7.79841 7.96004 8.12855 8.31083 8.48332 9.12015 9.67050 11.16843 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027438 B = 0.003559 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.243743 B = 7865.304498 C = 8419.972740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.057 3.943 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.522 4.522 8 H 0.052 0.948 9 C 0.031 3.969 10 C -0.095 4.095 11 C 0.079 3.921 12 H 0.098 0.902 13 N -0.806 5.806 14 C 0.487 3.513 15 O -0.553 6.553 16 N -0.703 5.703 17 C 0.090 3.910 18 H 0.133 0.867 19 C -0.149 4.149 20 H 0.100 0.900 21 C -0.087 4.087 22 C -0.126 4.126 23 C -0.118 4.118 24 C -0.086 4.086 25 C -0.161 4.161 26 H 0.105 0.895 27 H 0.259 0.741 28 H 0.035 0.965 29 H 0.013 0.987 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.348 0.652 33 H 0.334 0.666 34 H 0.404 0.596 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.206 -19.795 6.984 22.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.006 4.006 10 C -0.133 4.133 11 C -0.037 4.037 12 H 0.116 0.884 13 N -0.334 5.334 14 C 0.273 3.727 15 O -0.431 6.431 16 N -0.353 5.353 17 C -0.017 4.017 18 H 0.150 0.850 19 C -0.169 4.169 20 H 0.118 0.882 21 C -0.124 4.124 22 C -0.163 4.163 23 C -0.156 4.156 24 C -0.124 4.124 25 C -0.180 4.180 26 H 0.124 0.876 27 H 0.068 0.932 28 H 0.054 0.946 29 H 0.031 0.969 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.162 0.838 33 H 0.146 0.854 34 H 0.238 0.762 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.901 -19.403 6.436 22.296 hybrid contribution 0.909 0.391 0.408 1.070 sum 9.809 -19.012 6.844 22.462 Atomic orbital electron populations 1.69984 1.05947 1.26305 1.50942 1.24994 0.94810 0.99073 0.95489 0.86594 0.80110 0.84087 0.77534 1.19854 1.21045 1.21100 1.21318 0.92942 0.91318 1.50446 0.92936 1.19023 0.93561 0.89831 0.98218 1.21659 0.98841 0.92148 1.00685 1.21847 0.93488 0.93196 0.95161 0.88401 1.59008 1.26880 1.44269 1.03258 1.22801 0.81925 0.85557 0.82386 1.90633 1.61177 1.54201 1.37058 1.45656 1.45461 1.33710 1.10506 1.21334 0.92545 0.92095 0.95710 0.84984 1.21952 0.91432 1.00002 1.03531 0.88155 1.20911 0.94559 0.95436 1.01513 1.21648 1.00809 0.95389 0.98457 1.21552 0.95503 0.99607 0.98892 1.20992 0.96647 0.92532 1.02230 1.22753 1.02887 0.94481 0.97921 0.87643 0.93152 0.94635 0.96878 0.92875 0.92821 0.83805 0.85438 0.76159 0.91141 0.91469 0.91765 0.91758 0.91943 0.91657 0.91558 0.91472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.03 0.79 4.86 -27.89 -0.14 0.65 16 10 C -0.09 -1.92 4.78 -26.73 -0.13 -2.05 16 11 C 0.08 1.33 3.15 -68.86 -0.22 1.11 16 12 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 13 N -0.81 -13.71 8.44 -5.65 -0.05 -13.76 16 14 C 0.49 7.77 7.07 -10.99 -0.08 7.69 16 15 O -0.55 -10.32 15.82 5.55 0.09 -10.23 16 16 N -0.70 -9.05 5.56 -55.32 -0.31 -9.35 16 17 C 0.09 1.05 5.47 -69.47 -0.38 0.67 16 18 H 0.13 1.77 6.53 -51.93 -0.34 1.44 16 19 C -0.15 -1.49 5.73 -93.23 -0.53 -2.02 16 20 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 21 C -0.09 -0.77 6.01 -27.06 -0.16 -0.93 16 22 C -0.13 -1.01 5.69 -26.64 -0.15 -1.16 16 23 C -0.12 -0.86 5.93 -26.64 -0.16 -1.02 16 24 C -0.09 -0.69 5.83 -26.94 -0.16 -0.85 16 25 C -0.16 -1.48 6.22 -90.90 -0.57 -2.04 16 26 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.04 0.99 7.75 -51.93 -0.40 0.58 16 29 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.35 6.01 8.58 -39.29 -0.34 5.68 16 33 H 0.33 4.92 9.06 -39.29 -0.36 4.57 16 34 H 0.40 4.42 8.83 -40.82 -0.36 4.06 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.58 7.12 -51.93 -0.37 0.21 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.46 8.05 -51.93 -0.42 0.04 16 41 H 0.07 0.56 8.06 -51.93 -0.42 0.15 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 338.87 15.07 5.11 5.11 Total: -1.00 -32.04 338.87 -9.72 -41.76 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -7.19 Total: 9.44 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -3.08 Total: -13.51 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: 0.38 Total: -49.34 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.04 -9.72 -41.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691631328.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.105 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds