Wall clock time and date at job start Mon Mar 30 2020 04:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99991 * 2 1 4 4 H 1.48502 * 109.47011 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46999 * 300.00027 * 3 2 1 6 6 H 1.48496 * 109.46937 * 60.00326 * 3 2 1 7 7 C 1.37871 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00204 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00232 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47491 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47494 * 179.97438 * 10 9 7 12 12 H 1.08994 * 109.46869 * 305.00292 * 11 10 9 13 13 N 1.46900 * 109.46742 * 64.99369 * 11 10 9 14 14 C 1.50699 * 109.47324 * 184.99900 * 11 10 9 15 15 O 1.21286 * 119.99566 * 259.99898 * 14 11 10 16 16 N 1.34769 * 120.00027 * 80.00427 * 14 11 10 17 17 C 1.46498 * 120.00088 * 180.02562 * 16 14 11 18 18 H 1.09000 * 115.57302 * 350.84646 * 17 16 14 19 19 C 1.49176 * 117.72532 * 135.96349 * 17 16 14 20 20 H 1.09003 * 116.23346 * 0.91923 * 19 17 16 21 21 C 1.52487 * 121.53978 * 216.79857 * 19 17 16 22 22 C 1.52874 * 110.03265 * 311.50759 * 21 19 17 23 23 C 1.53301 * 108.73970 * 303.99828 * 22 21 19 24 24 C 1.52879 * 108.58161 * 74.35081 * 23 22 21 25 25 C 1.52075 * 61.32616 * 107.53735 * 19 17 16 26 26 H 1.08990 * 117.25447 * 253.34960 * 25 19 17 27 27 H 0.96996 * 119.99908 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47054 * 60.00217 * 9 7 2 29 29 H 1.09003 * 109.47193 * 300.00504 * 9 7 2 30 30 H 1.09002 * 109.47333 * 59.99728 * 10 9 7 31 31 H 1.08998 * 109.47125 * 299.99786 * 10 9 7 32 32 H 1.00909 * 111.00023 * 60.00522 * 13 11 10 33 33 H 1.00904 * 110.99877 * 183.95469 * 13 11 10 34 34 H 0.97002 * 120.00299 * 359.97438 * 16 14 11 35 35 H 1.08998 * 110.48355 * 190.76891 * 21 19 17 36 36 H 1.08999 * 108.52744 * 71.02252 * 21 19 17 37 37 H 1.09002 * 109.61727 * 184.17623 * 22 21 19 38 38 H 1.08998 * 109.61587 * 63.81744 * 22 21 19 39 39 H 1.08997 * 109.61828 * 194.08130 * 23 22 21 40 40 H 1.08998 * 109.61975 * 314.44120 * 23 22 21 41 41 H 1.09004 * 109.35389 * 65.69118 * 24 23 22 42 42 H 1.08996 * 109.35969 * 185.26555 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4803 -4.9871 0.0001 12 1 0.7884 -5.0068 0.8421 13 7 0.7280 -5.1188 -1.2548 14 6 2.4549 -6.1298 0.1239 15 8 2.7863 -6.7536 -0.8620 16 7 2.9581 -6.4586 1.3301 17 6 3.9061 -7.5691 1.4504 18 1 4.0357 -8.1762 0.5545 19 6 5.1076 -7.3657 2.3108 20 1 5.1870 -6.3983 2.8067 21 6 6.4646 -7.9527 1.9374 22 6 6.3129 -9.4279 1.5663 23 6 5.6487 -10.1641 2.7356 24 6 4.1649 -9.7969 2.7627 25 6 3.9992 -8.2796 2.8096 26 1 3.3656 -7.9033 3.6126 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8897 30 1 2.8720 -3.6043 0.8894 31 1 2.8719 -3.6043 -0.8905 32 1 1.3476 -5.1033 -2.0511 33 1 0.1636 -5.9552 -1.2520 34 1 2.6933 -5.9595 2.1186 35 1 7.1619 -7.8612 2.7701 36 1 6.8550 -7.4044 1.0801 37 1 7.2949 -9.8594 1.3726 38 1 5.6910 -9.5192 0.6758 39 1 5.7571 -11.2401 2.5994 40 1 6.1198 -9.8644 3.6717 41 1 3.6801 -10.1858 1.8672 42 1 3.6994 -10.2386 3.6437 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691631328.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:34 Heat of formation + Delta-G solvation = -67.650419 kcal Electronic energy + Delta-G solvation = -20138.657416 eV Core-core repulsion = 17116.738856 eV Total energy + Delta-G solvation = -3021.918560 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.47511 -40.16947 -36.81665 -35.69041 -34.81843 -32.84185 -31.93361 -31.68886 -28.25149 -26.08771 -24.80970 -23.46085 -22.52533 -22.06071 -21.16920 -19.42404 -18.65798 -18.14947 -17.76201 -16.99712 -16.51766 -16.17374 -15.72270 -15.38458 -15.10624 -14.89876 -14.86315 -14.47428 -14.29233 -13.83160 -13.44845 -13.26323 -13.15463 -12.82977 -12.82061 -12.51167 -12.40484 -12.23446 -11.81483 -11.76830 -11.66349 -11.57598 -11.25980 -11.17102 -11.00361 -10.68120 -10.49797 -9.69153 -9.62589 -8.14383 -6.24656 1.40755 1.41806 1.43689 1.54769 2.05006 2.44307 2.80496 3.18698 3.52878 3.64302 3.73009 3.79768 3.85308 4.04527 4.10448 4.14806 4.30128 4.33027 4.40671 4.58012 4.66966 4.76315 4.76879 4.83538 4.93485 5.01365 5.05315 5.20513 5.23849 5.28283 5.30983 5.37544 5.48056 5.50612 5.56930 5.83777 5.98075 6.07773 6.29984 6.42194 6.51903 6.94119 7.11612 7.43574 8.97050 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027438 B = 0.003559 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.243743 B = 7865.304498 C = 8419.972740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.001 3.999 3 Si 0.960 3.040 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.039 3.961 10 C -0.081 4.081 11 C 0.087 3.913 12 H 0.112 0.888 13 N -0.818 5.818 14 C 0.492 3.508 15 O -0.583 6.583 16 N -0.689 5.689 17 C 0.063 3.937 18 H 0.112 0.888 19 C -0.146 4.146 20 H 0.102 0.898 21 C -0.088 4.088 22 C -0.126 4.126 23 C -0.114 4.114 24 C -0.089 4.089 25 C -0.138 4.138 26 H 0.118 0.882 27 H 0.262 0.738 28 H 0.006 0.994 29 H -0.005 1.005 30 H 0.066 0.934 31 H 0.041 0.959 32 H 0.345 0.655 33 H 0.347 0.653 34 H 0.414 0.586 35 H 0.086 0.914 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.048 0.952 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.537 -20.330 8.585 24.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.785 3.215 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.120 4.120 11 C -0.029 4.029 12 H 0.130 0.870 13 N -0.347 5.347 14 C 0.277 3.723 15 O -0.463 6.463 16 N -0.339 5.339 17 C -0.042 4.042 18 H 0.130 0.870 19 C -0.166 4.166 20 H 0.120 0.880 21 C -0.125 4.125 22 C -0.163 4.163 23 C -0.152 4.152 24 C -0.127 4.127 25 C -0.157 4.157 26 H 0.136 0.864 27 H 0.071 0.929 28 H 0.024 0.976 29 H 0.014 0.986 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.159 0.841 33 H 0.160 0.840 34 H 0.251 0.749 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.244 -19.957 8.078 23.843 hybrid contribution 0.486 0.519 -0.075 0.715 sum 10.730 -19.439 8.003 23.602 Atomic orbital electron populations 1.70109 1.07617 1.27468 1.51784 1.25903 0.95715 1.03041 0.94979 0.85478 0.79045 0.79244 0.77730 1.18840 1.20691 1.20211 1.21758 0.93346 0.92756 1.50303 0.92681 1.18831 0.93861 0.91284 0.95827 1.21387 0.97724 0.92119 1.00728 1.21638 0.93656 0.91928 0.95658 0.87038 1.58989 1.27170 1.45281 1.03251 1.22414 0.81749 0.85181 0.82913 1.90624 1.62195 1.55258 1.38254 1.45517 1.44798 1.33725 1.09853 1.21382 0.93972 0.92400 0.96483 0.87027 1.22003 0.91624 1.00502 1.02478 0.88029 1.20955 0.94161 0.95760 1.01661 1.21651 1.01278 0.95114 0.98284 1.21543 0.94734 1.00209 0.98691 1.21057 0.97420 0.91568 1.02621 1.22875 1.01722 0.95166 0.95959 0.86406 0.92910 0.97575 0.98637 0.91499 0.94031 0.84147 0.83994 0.74882 0.89582 0.92608 0.90641 0.93332 0.90794 0.90871 0.92340 0.89871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.77 13.29 21.44 0.28 -56.49 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 4 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.54 -31.01 9.11 25.60 0.23 -30.78 16 8 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 9 C 0.04 2.04 4.86 29.85 0.15 2.19 16 10 C -0.08 -3.30 4.78 30.59 0.15 -3.15 16 11 C 0.09 2.91 3.15 44.17 0.14 3.05 16 12 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 13 N -0.82 -28.10 8.44 -171.80 -1.45 -29.55 16 14 C 0.49 15.51 7.07 87.66 0.62 16.13 16 15 O -0.58 -21.92 15.82 -3.05 -0.05 -21.96 16 16 N -0.69 -17.04 5.56 -447.31 -2.49 -19.52 16 17 C 0.06 1.43 5.47 43.99 0.24 1.67 16 18 H 0.11 3.04 6.53 -2.39 -0.02 3.02 16 19 C -0.15 -2.69 5.73 -12.49 -0.07 -2.76 16 20 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 21 C -0.09 -1.43 6.01 30.38 0.18 -1.24 16 22 C -0.13 -1.85 5.69 30.65 0.17 -1.67 16 23 C -0.11 -1.39 5.93 30.65 0.18 -1.20 16 24 C -0.09 -1.23 5.83 30.46 0.18 -1.05 16 25 C -0.14 -2.24 6.22 -10.98 -0.07 -2.31 16 26 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 28 H 0.01 0.34 7.75 -2.39 -0.02 0.32 16 29 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 30 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.34 12.18 8.58 -89.69 -0.77 11.41 16 33 H 0.35 10.22 9.06 -89.69 -0.81 9.41 16 34 H 0.41 8.37 8.83 -92.71 -0.82 7.56 16 35 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.05 0.87 7.12 -2.39 -0.02 0.85 16 39 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.07 0.80 8.05 -2.39 -0.02 0.78 16 41 H 0.06 0.92 8.06 -2.38 -0.02 0.90 16 42 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -68.87 338.87 -0.49 -69.36 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: -1.38 Total: 32.16 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: 2.56 Total: -20.59 kcal Atomic # 7 Polarization: -101.91 SS G_CDS: -3.65 Total: -105.56 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.05 Total: -21.96 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -68.87 -0.49 -69.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691631328.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.710 kcal (2) G-P(sol) polarization free energy of solvation -68.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds