Wall clock time and date at job start Mon Mar 30 2020 04:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99642 * 2 1 4 4 H 1.48496 * 109.47360 * 240.00396 * 3 2 1 5 5 H 1.48504 * 109.47209 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47207 * 120.00135 * 3 2 1 7 7 C 1.37875 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99592 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99868 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46995 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47232 * 179.97438 * 10 9 7 12 12 H 1.09007 * 109.47108 * 54.99393 * 11 10 9 13 13 N 1.46909 * 109.47141 * 294.99931 * 11 10 9 14 14 C 1.50700 * 109.47432 * 174.99913 * 11 10 9 15 15 O 1.21278 * 120.00158 * 99.99628 * 14 11 10 16 16 N 1.34784 * 119.99578 * 279.99886 * 14 11 10 17 17 C 1.46501 * 119.99711 * 179.97438 * 16 14 11 18 18 H 1.09003 * 115.60764 * 9.09069 * 17 16 14 19 19 C 1.52299 * 117.53779 * 155.00242 * 17 16 14 20 20 H 1.08997 * 115.29102 * 0.57139 * 19 17 16 21 21 C 1.52074 * 119.83643 * 217.19609 * 19 17 16 22 22 C 1.52870 * 110.51620 * 310.44571 * 21 19 17 23 23 C 1.53306 * 108.59150 * 305.11283 * 22 21 19 24 24 C 1.52879 * 108.58005 * 74.43992 * 23 22 21 25 25 C 1.52065 * 60.63685 * 107.37550 * 19 17 16 26 26 H 1.09002 * 117.25570 * 253.95717 * 25 19 17 27 27 H 0.96996 * 120.00846 * 359.97438 * 1 2 3 28 28 H 1.08991 * 109.47264 * 59.99866 * 9 7 2 29 29 H 1.09004 * 109.47121 * 299.99665 * 9 7 2 30 30 H 1.09001 * 109.47566 * 59.99845 * 10 9 7 31 31 H 1.09004 * 109.46657 * 299.99637 * 10 9 7 32 32 H 1.00896 * 110.99681 * 176.04984 * 13 11 10 33 33 H 1.00898 * 110.99578 * 299.99529 * 13 11 10 34 34 H 0.96996 * 119.99757 * 359.97438 * 16 14 11 35 35 H 1.09005 * 109.26395 * 190.17849 * 21 19 17 36 36 H 1.08998 * 109.24017 * 70.69726 * 21 19 17 37 37 H 1.09002 * 109.61917 * 185.38227 * 22 21 19 38 38 H 1.08995 * 109.76737 * 64.92836 * 22 21 19 39 39 H 1.09003 * 109.61971 * 194.17340 * 23 22 21 40 40 H 1.09000 * 109.61670 * 314.71591 * 23 22 21 41 41 H 1.08998 * 109.35313 * 65.68733 * 24 23 22 42 42 H 1.09003 * 109.35533 * 185.27274 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1938 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6619 -0.0005 11 6 1.4806 -4.9870 0.0001 12 1 0.7881 -5.0072 -0.8415 13 7 0.7293 -5.1181 1.2557 14 6 2.4552 -6.1297 -0.1237 15 8 2.7875 -6.7529 0.8622 16 7 2.9576 -6.4591 -1.3303 17 6 3.9055 -7.5696 -1.4506 18 1 4.0370 -8.1760 -0.5544 19 6 3.9969 -8.2746 -2.7976 20 1 3.3435 -7.8792 -3.5753 21 6 4.2074 -9.7797 -2.8510 22 6 5.3701 -10.1905 -1.9476 23 6 6.6106 -9.3849 -2.3507 24 6 6.4452 -7.9511 -1.8466 25 6 5.1306 -7.3631 -2.3546 26 1 5.2111 -6.3925 -2.8443 27 1 -0.4851 0.8399 0.0004 28 1 0.6242 -2.5567 -0.8902 29 1 0.6249 -2.5571 0.8897 30 1 2.8722 -3.6042 0.8894 31 1 2.8721 -3.6041 -0.8906 32 1 0.1651 -5.9546 1.2537 33 1 1.3494 -5.1022 2.0515 34 1 2.6916 -5.9608 -2.1188 35 1 4.4268 -10.0760 -3.8768 36 1 3.2988 -10.2815 -2.5184 37 1 5.5698 -11.2552 -2.0693 38 1 5.1203 -9.9816 -0.9074 39 1 7.4983 -9.8306 -1.9019 40 1 6.7082 -9.3821 -3.4363 41 1 6.4445 -7.9492 -0.7567 42 1 7.2757 -7.3436 -2.2065 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691631334.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:39 Heat of formation + Delta-G solvation = -46.202880 kcal Electronic energy + Delta-G solvation = -20132.120265 eV Core-core repulsion = 17111.131740 eV Total energy + Delta-G solvation = -3020.988525 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.38002 -39.06151 -35.23986 -34.66954 -32.79632 -31.87083 -31.02233 -30.08826 -26.58549 -24.80079 -23.45533 -22.81820 -21.22174 -20.69494 -19.77833 -18.70994 -17.13157 -16.89284 -16.15651 -15.58022 -15.25481 -14.56326 -14.53403 -14.31514 -14.10569 -14.05974 -13.64567 -13.40101 -12.59295 -12.40014 -12.32279 -12.15524 -12.00794 -11.62046 -11.48601 -11.14797 -10.87772 -10.77931 -10.66403 -10.57208 -10.53405 -10.14323 -9.95543 -9.79056 -9.37001 -9.01049 -8.61760 -8.35288 -8.20529 -5.93552 -3.95887 2.68417 3.14415 3.36225 3.40756 3.43226 3.63586 4.40649 4.48564 4.50137 4.52639 4.74747 4.79155 4.86639 5.02591 5.04919 5.13100 5.27064 5.33260 5.41793 5.42819 5.52904 5.64592 5.67939 5.76047 5.82853 5.84169 5.95305 5.99999 6.02698 6.13762 6.42158 6.51742 6.65915 7.08565 7.37350 7.59622 7.75887 7.79901 7.96219 8.13211 8.31347 8.48543 9.11931 9.67223 11.17327 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027237 B = 0.003569 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.772320 B = 7843.123149 C = 8433.966078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.051 0.949 9 C 0.031 3.969 10 C -0.095 4.095 11 C 0.079 3.921 12 H 0.098 0.902 13 N -0.806 5.806 14 C 0.487 3.513 15 O -0.553 6.553 16 N -0.703 5.703 17 C 0.081 3.919 18 H 0.134 0.866 19 C -0.147 4.147 20 H 0.101 0.899 21 C -0.085 4.085 22 C -0.125 4.125 23 C -0.118 4.118 24 C -0.088 4.088 25 C -0.157 4.157 26 H 0.105 0.895 27 H 0.260 0.740 28 H 0.013 0.987 29 H 0.035 0.965 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.334 0.666 33 H 0.348 0.652 34 H 0.403 0.597 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.168 -19.811 -7.000 22.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.070 0.930 9 C -0.006 4.006 10 C -0.133 4.133 11 C -0.037 4.037 12 H 0.116 0.884 13 N -0.334 5.334 14 C 0.273 3.727 15 O -0.431 6.431 16 N -0.353 5.353 17 C -0.026 4.026 18 H 0.151 0.849 19 C -0.166 4.166 20 H 0.119 0.881 21 C -0.123 4.123 22 C -0.163 4.163 23 C -0.155 4.155 24 C -0.126 4.126 25 C -0.177 4.177 26 H 0.123 0.877 27 H 0.070 0.930 28 H 0.031 0.969 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.146 0.854 33 H 0.162 0.838 34 H 0.238 0.762 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.852 -19.410 -6.449 22.287 hybrid contribution 0.902 0.372 -0.416 1.060 sum 9.753 -19.038 -6.865 22.466 Atomic orbital electron populations 1.69959 1.05952 1.26547 1.50747 1.24989 0.94807 0.99045 0.95460 0.86709 0.79609 0.83410 0.78536 1.20368 1.21326 1.20305 1.21246 0.92870 0.91347 1.50734 0.93039 1.19011 0.93546 0.89798 0.98206 1.21659 0.98846 0.92145 1.00689 1.21848 0.93494 0.93208 0.95144 0.88415 1.59008 1.26893 1.44257 1.03253 1.22796 0.81917 0.85566 0.82383 1.90630 1.61120 1.54252 1.37066 1.45636 1.45484 1.33670 1.10469 1.21919 0.92961 0.92145 0.95555 0.84859 1.22362 1.01086 0.94799 0.98369 0.88093 1.20809 0.98612 0.92649 1.00201 1.21642 0.95176 0.99540 0.99900 1.21561 0.97623 0.95211 1.01151 1.21013 0.95147 0.95803 1.00641 1.22811 0.90860 1.00329 1.03719 0.87654 0.93029 0.96882 0.94652 0.92822 0.92862 0.85446 0.83803 0.76204 0.91293 0.91493 0.91743 0.91700 0.91898 0.91683 0.91444 0.91433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 9 C 0.03 0.81 4.86 -27.88 -0.14 0.67 16 10 C -0.10 -1.93 4.78 -26.73 -0.13 -2.06 16 11 C 0.08 1.33 3.15 -68.86 -0.22 1.11 16 12 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 13 N -0.81 -13.73 8.44 -5.65 -0.05 -13.77 16 14 C 0.49 7.78 7.07 -10.98 -0.08 7.70 16 15 O -0.55 -10.32 15.82 5.56 0.09 -10.24 16 16 N -0.70 -9.05 5.57 -53.83 -0.30 -9.35 16 17 C 0.08 0.94 5.56 -67.95 -0.38 0.57 16 18 H 0.13 1.79 6.53 -51.93 -0.34 1.45 16 19 C -0.15 -1.34 5.92 -91.93 -0.54 -1.89 16 20 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 21 C -0.09 -0.67 5.93 -27.27 -0.16 -0.83 16 22 C -0.13 -0.96 5.70 -26.64 -0.15 -1.12 16 23 C -0.12 -0.89 5.93 -26.63 -0.16 -1.05 16 24 C -0.09 -0.80 5.83 -26.94 -0.16 -0.95 16 25 C -0.16 -1.56 6.12 -90.91 -0.56 -2.12 16 26 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 30 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.33 4.93 9.06 -39.29 -0.36 4.57 16 33 H 0.35 6.02 8.58 -39.29 -0.34 5.69 16 34 H 0.40 4.42 8.83 -40.82 -0.36 4.06 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.57 7.12 -51.93 -0.37 0.20 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.47 8.04 -51.93 -0.42 0.05 16 41 H 0.07 0.67 8.06 -51.93 -0.42 0.25 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 338.97 15.07 5.11 5.11 Total: -1.00 -32.02 338.97 -9.70 -41.73 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -7.19 Total: 9.57 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -3.08 Total: -13.56 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: 0.39 Total: -49.39 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.02 -9.70 -41.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691631334.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.474 kcal (2) G-P(sol) polarization free energy of solvation -32.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds