Wall clock time and date at job start Mon Mar 30 2020 04:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99642 * 2 1 4 4 H 1.48496 * 109.47360 * 240.00396 * 3 2 1 5 5 H 1.48504 * 109.47209 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47207 * 120.00135 * 3 2 1 7 7 C 1.37875 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99592 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99868 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46995 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47232 * 179.97438 * 10 9 7 12 12 H 1.09007 * 109.47108 * 54.99393 * 11 10 9 13 13 N 1.46909 * 109.47141 * 294.99931 * 11 10 9 14 14 C 1.50700 * 109.47432 * 174.99913 * 11 10 9 15 15 O 1.21278 * 120.00158 * 99.99628 * 14 11 10 16 16 N 1.34784 * 119.99578 * 279.99886 * 14 11 10 17 17 C 1.46501 * 119.99711 * 179.97438 * 16 14 11 18 18 H 1.09003 * 115.60764 * 9.09069 * 17 16 14 19 19 C 1.52299 * 117.53779 * 155.00242 * 17 16 14 20 20 H 1.08997 * 115.29102 * 0.57139 * 19 17 16 21 21 C 1.52074 * 119.83643 * 217.19609 * 19 17 16 22 22 C 1.52870 * 110.51620 * 310.44571 * 21 19 17 23 23 C 1.53306 * 108.59150 * 305.11283 * 22 21 19 24 24 C 1.52879 * 108.58005 * 74.43992 * 23 22 21 25 25 C 1.52065 * 60.63685 * 107.37550 * 19 17 16 26 26 H 1.09002 * 117.25570 * 253.95717 * 25 19 17 27 27 H 0.96996 * 120.00846 * 359.97438 * 1 2 3 28 28 H 1.08991 * 109.47264 * 59.99866 * 9 7 2 29 29 H 1.09004 * 109.47121 * 299.99665 * 9 7 2 30 30 H 1.09001 * 109.47566 * 59.99845 * 10 9 7 31 31 H 1.09004 * 109.46657 * 299.99637 * 10 9 7 32 32 H 1.00896 * 110.99681 * 176.04984 * 13 11 10 33 33 H 1.00898 * 110.99578 * 299.99529 * 13 11 10 34 34 H 0.96996 * 119.99757 * 359.97438 * 16 14 11 35 35 H 1.09005 * 109.26395 * 190.17849 * 21 19 17 36 36 H 1.08998 * 109.24017 * 70.69726 * 21 19 17 37 37 H 1.09002 * 109.61917 * 185.38227 * 22 21 19 38 38 H 1.08995 * 109.76737 * 64.92836 * 22 21 19 39 39 H 1.09003 * 109.61971 * 194.17340 * 23 22 21 40 40 H 1.09000 * 109.61670 * 314.71591 * 23 22 21 41 41 H 1.08998 * 109.35313 * 65.68733 * 24 23 22 42 42 H 1.09003 * 109.35533 * 185.27274 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1938 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6619 -0.0005 11 6 1.4806 -4.9870 0.0001 12 1 0.7881 -5.0072 -0.8415 13 7 0.7293 -5.1181 1.2557 14 6 2.4552 -6.1297 -0.1237 15 8 2.7875 -6.7529 0.8622 16 7 2.9576 -6.4591 -1.3303 17 6 3.9055 -7.5696 -1.4506 18 1 4.0370 -8.1760 -0.5544 19 6 3.9969 -8.2746 -2.7976 20 1 3.3435 -7.8792 -3.5753 21 6 4.2074 -9.7797 -2.8510 22 6 5.3701 -10.1905 -1.9476 23 6 6.6106 -9.3849 -2.3507 24 6 6.4452 -7.9511 -1.8466 25 6 5.1306 -7.3631 -2.3546 26 1 5.2111 -6.3925 -2.8443 27 1 -0.4851 0.8399 0.0004 28 1 0.6242 -2.5567 -0.8902 29 1 0.6249 -2.5571 0.8897 30 1 2.8722 -3.6042 0.8894 31 1 2.8721 -3.6041 -0.8906 32 1 0.1651 -5.9546 1.2537 33 1 1.3494 -5.1022 2.0515 34 1 2.6916 -5.9608 -2.1188 35 1 4.4268 -10.0760 -3.8768 36 1 3.2988 -10.2815 -2.5184 37 1 5.5698 -11.2552 -2.0693 38 1 5.1203 -9.9816 -0.9074 39 1 7.4983 -9.8306 -1.9019 40 1 6.7082 -9.3821 -3.4363 41 1 6.4445 -7.9492 -0.7567 42 1 7.2757 -7.3436 -2.2065 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691631334.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:38 Heat of formation + Delta-G solvation = -67.959486 kcal Electronic energy + Delta-G solvation = -20133.063702 eV Core-core repulsion = 17111.131740 eV Total energy + Delta-G solvation = -3021.931962 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.40091 -40.11739 -36.81608 -35.66140 -34.81692 -32.78437 -31.93306 -31.68885 -28.25202 -26.08013 -24.78856 -23.48305 -22.52930 -22.01171 -21.17718 -19.43441 -18.64359 -18.13390 -17.73002 -17.00002 -16.51698 -16.19031 -15.67104 -15.47082 -15.05243 -14.87352 -14.84059 -14.48242 -14.27634 -13.83605 -13.45277 -13.26009 -13.15787 -12.83077 -12.77866 -12.52878 -12.38674 -12.25981 -11.86705 -11.76945 -11.65783 -11.52414 -11.27089 -11.19440 -11.01678 -10.70457 -10.48763 -9.64319 -9.60050 -8.13957 -6.24496 1.40759 1.43300 1.44573 1.52358 2.05694 2.44548 2.79745 3.18909 3.52160 3.62656 3.75631 3.78800 3.81810 4.03410 4.10296 4.13226 4.30212 4.34420 4.39061 4.58579 4.67443 4.75974 4.76778 4.85256 4.93726 5.01995 5.04488 5.21135 5.23841 5.27700 5.31943 5.38844 5.48015 5.50285 5.56529 5.83838 5.98063 6.07668 6.30008 6.42339 6.51834 6.93951 7.11855 7.43626 8.97081 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027237 B = 0.003569 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.772320 B = 7843.123149 C = 8433.966078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.960 3.040 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.546 4.546 8 H 0.055 0.945 9 C 0.040 3.960 10 C -0.081 4.081 11 C 0.087 3.913 12 H 0.112 0.888 13 N -0.818 5.818 14 C 0.492 3.508 15 O -0.583 6.583 16 N -0.689 5.689 17 C 0.054 3.946 18 H 0.113 0.887 19 C -0.126 4.126 20 H 0.113 0.887 21 C -0.087 4.087 22 C -0.126 4.126 23 C -0.114 4.114 24 C -0.091 4.091 25 C -0.151 4.151 26 H 0.107 0.893 27 H 0.262 0.738 28 H -0.005 1.005 29 H 0.006 0.994 30 H 0.041 0.959 31 H 0.067 0.933 32 H 0.347 0.653 33 H 0.345 0.655 34 H 0.414 0.586 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.052 0.948 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.522 -20.353 -8.623 24.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.784 3.216 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.584 4.584 8 H 0.074 0.926 9 C 0.002 3.998 10 C -0.120 4.120 11 C -0.029 4.029 12 H 0.129 0.871 13 N -0.347 5.347 14 C 0.277 3.723 15 O -0.463 6.463 16 N -0.338 5.338 17 C -0.052 4.052 18 H 0.131 0.869 19 C -0.145 4.145 20 H 0.131 0.869 21 C -0.124 4.124 22 C -0.163 4.163 23 C -0.151 4.151 24 C -0.129 4.129 25 C -0.170 4.170 26 H 0.125 0.875 27 H 0.071 0.929 28 H 0.013 0.987 29 H 0.024 0.976 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.251 0.749 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.071 0.929 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.220 -19.974 -8.114 23.858 hybrid contribution 0.475 0.502 0.075 0.695 sum 10.695 -19.472 -8.039 23.626 Atomic orbital electron populations 1.70092 1.07635 1.27622 1.51628 1.25903 0.95707 1.03035 0.94934 0.85590 0.78339 0.78572 0.79057 1.19031 1.20894 1.19640 1.21710 0.93358 0.92776 1.50568 0.92648 1.18821 0.93852 0.91271 0.95806 1.21386 0.97725 0.92109 1.00733 1.21640 0.93664 0.91945 0.95637 0.87056 1.58989 1.27183 1.45270 1.03247 1.22406 0.81741 0.85195 0.82914 1.90621 1.62140 1.55311 1.38265 1.45492 1.44807 1.33694 1.09815 1.21952 0.94418 0.92546 0.96321 0.86912 1.22460 1.00065 0.95647 0.96339 0.86906 1.20878 0.98746 0.91505 1.01261 1.21651 0.95269 1.00502 0.98917 1.21550 0.97881 0.94024 1.01687 1.21050 0.94944 0.97117 0.99785 1.22899 0.90826 1.00802 1.02508 0.87492 0.92890 0.98652 0.97604 0.94030 0.91480 0.84003 0.84149 0.74930 0.89466 0.91408 0.90301 0.93378 0.91061 0.90723 0.92924 0.90668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.96 44.52 29.54 68.60 2.03 46.55 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.55 -31.18 9.11 25.60 0.23 -30.94 16 8 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 9 C 0.04 2.07 4.86 29.85 0.15 2.22 16 10 C -0.08 -3.30 4.78 30.59 0.15 -3.15 16 11 C 0.09 2.91 3.15 44.17 0.14 3.05 16 12 H 0.11 3.42 8.14 -2.38 -0.02 3.40 16 13 N -0.82 -28.15 8.44 -171.78 -1.45 -29.60 16 14 C 0.49 15.53 7.07 87.66 0.62 16.15 16 15 O -0.58 -21.95 15.82 -3.02 -0.05 -22.00 16 16 N -0.69 -17.04 5.57 -442.59 -2.46 -19.51 16 17 C 0.05 1.21 5.56 44.98 0.25 1.46 16 18 H 0.11 3.08 6.53 -2.39 -0.02 3.06 16 19 C -0.13 -2.04 5.92 -11.64 -0.07 -2.11 16 20 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 21 C -0.09 -1.15 5.93 30.25 0.18 -0.97 16 22 C -0.13 -1.72 5.70 30.65 0.17 -1.54 16 23 C -0.11 -1.49 5.93 30.66 0.18 -1.30 16 24 C -0.09 -1.52 5.83 30.46 0.18 -1.35 16 25 C -0.15 -2.75 6.12 -10.98 -0.07 -2.82 16 26 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 28 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 29 H 0.01 0.32 7.75 -2.39 -0.02 0.30 16 30 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.35 10.24 9.06 -89.70 -0.81 9.43 16 33 H 0.34 12.20 8.58 -89.70 -0.77 11.43 16 34 H 0.41 8.38 8.83 -92.71 -0.82 7.56 16 35 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.05 0.82 7.12 -2.39 -0.02 0.80 16 39 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.07 0.86 8.04 -2.39 -0.02 0.84 16 41 H 0.05 1.03 8.06 -2.39 -0.02 1.02 16 42 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -68.90 338.97 -0.45 -69.35 By element: Atomic # 1 Polarization: 33.88 SS G_CDS: -1.38 Total: 32.51 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: 2.57 Total: -20.72 kcal Atomic # 7 Polarization: -102.07 SS G_CDS: -3.63 Total: -105.70 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.05 Total: -22.00 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -68.90 -0.45 -69.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691631334.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.395 kcal (2) G-P(sol) polarization free energy of solvation -68.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds