Wall clock time and date at job start Mon Mar 30 2020 05:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00036 * 2 1 4 4 H 1.48501 * 109.47255 * 269.99614 * 3 2 1 5 5 H 1.48496 * 109.47418 * 30.00060 * 3 2 1 6 6 H 1.48504 * 109.47507 * 150.00123 * 3 2 1 7 7 C 1.37881 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00374 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00013 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47161 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46897 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.46962 * 55.00059 * 11 10 9 13 13 N 1.46899 * 109.47183 * 294.99944 * 11 10 9 14 14 C 1.50703 * 109.46903 * 174.99962 * 11 10 9 15 15 O 1.21278 * 119.99985 * 100.00370 * 14 11 10 16 16 N 1.34779 * 119.99944 * 280.00082 * 14 11 10 17 17 C 1.46499 * 119.99872 * 180.02562 * 16 14 11 18 18 C 1.53000 * 109.46840 * 180.02562 * 17 16 14 19 19 H 1.08996 * 109.63818 * 304.57604 * 18 17 16 20 20 C 1.53014 * 109.64690 * 64.99800 * 18 17 16 21 21 C 1.50066 * 110.15249 * 169.11841 * 20 18 17 22 22 C 1.29443 * 124.07286 * 342.87293 * 21 20 18 23 23 C 1.50070 * 124.07421 * 0.44331 * 22 21 20 24 24 C 1.53010 * 110.15343 * 342.90644 * 23 22 21 25 25 H 0.96996 * 120.00196 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46903 * 60.00182 * 9 7 2 27 27 H 1.09003 * 109.47116 * 299.99933 * 9 7 2 28 28 H 1.09002 * 109.47209 * 60.00191 * 10 9 7 29 29 H 1.09003 * 109.46906 * 299.99884 * 10 9 7 30 30 H 1.00902 * 111.00261 * 176.04858 * 13 11 10 31 31 H 1.00900 * 110.99955 * 300.00306 * 13 11 10 32 32 H 0.97000 * 119.99708 * 359.97438 * 16 14 11 33 33 H 1.09002 * 109.47391 * 59.99686 * 17 16 14 34 34 H 1.09001 * 109.46813 * 299.99742 * 17 16 14 35 35 H 1.09003 * 109.35947 * 289.33255 * 20 18 17 36 36 H 1.09003 * 109.35847 * 48.90810 * 20 18 17 37 37 H 1.08001 * 117.96529 * 162.84429 * 21 20 18 38 38 H 1.08002 * 117.96184 * 180.46968 * 22 21 20 39 39 H 1.09001 * 109.35878 * 103.10012 * 23 22 21 40 40 H 1.09003 * 109.35762 * 222.82496 * 23 22 21 41 41 H 1.08994 * 109.62801 * 289.72216 * 24 23 22 42 42 H 1.09001 * 109.64408 * 169.10486 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0001 11 6 5.5516 -2.6366 0.0001 12 1 5.9148 -2.0470 0.8419 13 7 6.0413 -2.0513 -1.2551 14 6 6.0539 -4.0520 0.1241 15 8 6.4281 -4.6512 -0.8617 16 7 6.0874 -4.6519 1.3305 17 6 6.5762 -6.0277 1.4511 18 6 6.5093 -6.4662 2.9154 19 1 7.0626 -5.7604 3.5348 20 6 5.0495 -6.5160 3.3713 21 6 4.9478 -7.1919 4.7072 22 6 5.8792 -7.9312 5.2187 23 6 7.1945 -8.2080 4.5513 24 6 7.1113 -7.8694 3.0614 25 1 -0.4850 0.8400 -0.0004 26 1 3.8752 -0.6797 0.8895 27 1 3.8746 -0.6809 -0.8905 28 1 3.6579 -3.1507 -0.8897 29 1 3.6586 -3.1502 0.8904 30 1 7.0478 -1.9808 -1.2528 31 1 5.7178 -2.5803 -2.0511 32 1 5.7885 -4.1725 2.1190 33 1 7.6079 -6.0786 1.1030 34 1 5.9555 -6.6882 0.8457 35 1 4.6604 -5.5008 3.4494 36 1 4.4613 -7.0707 2.6401 37 1 4.0414 -7.0525 5.2777 38 1 5.6982 -8.3769 6.1856 39 1 7.9707 -7.6006 5.0168 40 1 7.4433 -9.2629 4.6668 41 1 6.4749 -8.5956 2.5559 42 1 8.1101 -7.8868 2.6254 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691642442.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:32 Heat of formation + Delta-G solvation = -53.283667 kcal Electronic energy + Delta-G solvation = -20053.883058 eV Core-core repulsion = 17032.587487 eV Total energy + Delta-G solvation = -3021.295571 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.01723 -38.83052 -35.46239 -34.87033 -32.74963 -31.67937 -30.95731 -30.47352 -27.29426 -25.74762 -23.69349 -22.90052 -21.37082 -20.43828 -19.82218 -18.21209 -17.29986 -16.63975 -16.38615 -15.93502 -15.53249 -15.05422 -14.54181 -14.25869 -14.10495 -13.71266 -13.61299 -13.42720 -13.09949 -12.63387 -12.60334 -12.36835 -12.20533 -12.12360 -11.68175 -11.08449 -10.97367 -10.88058 -10.81736 -10.44741 -10.33705 -9.99546 -9.70480 -9.58121 -9.24533 -9.10931 -9.06970 -8.50273 -8.37608 -5.98788 -3.96317 2.04622 2.73978 3.24765 3.38176 3.44589 3.50025 4.31298 4.38400 4.51969 4.53086 4.79268 4.88317 4.91418 5.05900 5.06318 5.18935 5.24912 5.35725 5.40671 5.42422 5.53794 5.57834 5.58717 5.69378 5.70160 5.78898 5.88599 6.06969 6.30151 6.39226 6.43343 6.49764 6.70138 6.88785 7.26761 7.39496 7.52784 7.59641 7.67982 7.87284 8.28178 8.58839 9.06005 9.64284 11.14732 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021843 B = 0.003860 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.553626 B = 7251.295755 C = 8151.220613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.065 3.935 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.264 1.264 7 C -0.521 4.521 8 H 0.069 0.931 9 C -0.004 4.004 10 C -0.087 4.087 11 C 0.074 3.926 12 H 0.097 0.903 13 N -0.811 5.811 14 C 0.483 3.517 15 O -0.554 6.554 16 N -0.729 5.729 17 C 0.123 3.877 18 C -0.099 4.099 19 H 0.079 0.921 20 C -0.091 4.091 21 C -0.149 4.149 22 C -0.164 4.164 23 C -0.089 4.089 24 C -0.112 4.112 25 H 0.262 0.738 26 H 0.013 0.987 27 H 0.029 0.971 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.335 0.665 31 H 0.350 0.650 32 H 0.402 0.598 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.061 -14.496 9.502 23.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.711 3.289 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.087 0.913 9 C -0.042 4.042 10 C -0.125 4.125 11 C -0.041 4.041 12 H 0.115 0.885 13 N -0.339 5.339 14 C 0.268 3.732 15 O -0.432 6.432 16 N -0.382 5.382 17 C -0.001 4.001 18 C -0.118 4.118 19 H 0.098 0.902 20 C -0.128 4.128 21 C -0.167 4.167 22 C -0.182 4.182 23 C -0.126 4.126 24 C -0.151 4.151 25 H 0.071 0.929 26 H 0.031 0.969 27 H 0.048 0.952 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.146 0.854 31 H 0.164 0.836 32 H 0.237 0.763 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.750 -14.155 8.984 23.003 hybrid contribution 0.581 0.082 0.409 0.715 sum 16.331 -14.073 9.393 23.515 Atomic orbital electron populations 1.69926 1.06359 1.26813 1.51510 1.25021 0.94703 0.99237 0.94598 0.86726 0.80232 0.83394 0.78583 1.20289 1.21733 1.18901 1.21186 0.89766 0.94326 1.50621 0.91320 1.19486 0.96327 0.91223 0.97153 1.21461 0.88029 1.01506 1.01511 1.21859 0.99350 0.87910 0.95028 0.88483 1.59035 1.15334 1.56117 1.03461 1.22607 0.76955 0.90957 0.82637 1.90650 1.48647 1.66715 1.37138 1.46167 1.66607 1.15138 1.10304 1.21381 0.99693 0.83266 0.95779 1.21460 0.97038 0.97849 0.95418 0.90242 1.20562 0.96002 1.01132 0.95084 1.22092 0.99098 0.98261 0.97229 1.22028 0.95924 1.00124 1.00126 1.20428 0.95769 1.01494 0.94928 1.21576 1.01165 0.95928 0.96383 0.92851 0.96911 0.95250 0.92253 0.92209 0.85358 0.83622 0.76296 0.91737 0.91558 0.90544 0.90353 0.87790 0.88112 0.90942 0.91052 0.91331 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.22 13.96 55.43 0.77 -27.44 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.52 -14.87 9.66 -34.44 -0.33 -15.20 16 8 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 9 C 0.00 -0.10 3.93 -27.88 -0.11 -0.21 16 10 C -0.09 -1.67 4.78 -26.73 -0.13 -1.80 16 11 C 0.07 1.17 3.15 -68.86 -0.22 0.95 16 12 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 13 N -0.81 -12.78 8.44 -5.65 -0.05 -12.83 16 14 C 0.48 7.27 7.07 -10.98 -0.08 7.19 16 15 O -0.55 -9.97 16.25 5.56 0.09 -9.88 16 16 N -0.73 -8.56 5.35 -60.29 -0.32 -8.88 16 17 C 0.12 1.28 5.07 -4.04 -0.02 1.26 16 18 C -0.10 -0.81 2.28 -90.41 -0.21 -1.02 16 19 H 0.08 0.64 8.13 -51.93 -0.42 0.21 16 20 C -0.09 -0.81 5.18 -28.18 -0.15 -0.95 16 21 C -0.15 -1.28 9.80 -35.90 -0.35 -1.63 16 22 C -0.16 -1.28 9.80 -35.90 -0.35 -1.64 16 23 C -0.09 -0.61 6.12 -28.18 -0.17 -0.78 16 24 C -0.11 -0.82 5.31 -26.52 -0.14 -0.96 16 25 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 26 H 0.01 0.30 7.20 -51.93 -0.37 -0.08 16 27 H 0.03 0.71 7.18 -51.93 -0.37 0.34 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.33 4.54 9.06 -39.29 -0.36 4.18 16 31 H 0.35 5.66 8.58 -39.29 -0.34 5.33 16 32 H 0.40 4.00 7.76 -40.82 -0.32 3.68 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 35 H 0.08 0.69 7.48 -51.93 -0.39 0.30 16 36 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 37 H 0.10 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.10 0.70 8.06 -52.49 -0.42 0.27 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 338.95 15.07 5.11 5.11 Total: -1.00 -32.89 338.95 -8.64 -41.53 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -7.22 Total: 7.97 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -2.35 Total: -12.98 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: 0.40 Total: -49.15 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.89 -8.64 -41.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691642442.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.749 kcal (2) G-P(sol) polarization free energy of solvation -32.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds