Wall clock time and date at job start Mon Mar 30 2020 05:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00036 * 2 1 4 4 H 1.48501 * 109.47255 * 269.99614 * 3 2 1 5 5 H 1.48496 * 109.47418 * 30.00060 * 3 2 1 6 6 H 1.48504 * 109.47507 * 150.00123 * 3 2 1 7 7 C 1.37881 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00374 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00013 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47161 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46897 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.46962 * 55.00059 * 11 10 9 13 13 N 1.46899 * 109.47183 * 294.99944 * 11 10 9 14 14 C 1.50703 * 109.46903 * 174.99962 * 11 10 9 15 15 O 1.21278 * 119.99985 * 100.00370 * 14 11 10 16 16 N 1.34779 * 119.99944 * 280.00082 * 14 11 10 17 17 C 1.46499 * 119.99872 * 180.02562 * 16 14 11 18 18 C 1.53000 * 109.46840 * 180.02562 * 17 16 14 19 19 H 1.08996 * 109.63818 * 304.57604 * 18 17 16 20 20 C 1.53014 * 109.64690 * 64.99800 * 18 17 16 21 21 C 1.50066 * 110.15249 * 169.11841 * 20 18 17 22 22 C 1.29443 * 124.07286 * 342.87293 * 21 20 18 23 23 C 1.50070 * 124.07421 * 0.44331 * 22 21 20 24 24 C 1.53010 * 110.15343 * 342.90644 * 23 22 21 25 25 H 0.96996 * 120.00196 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46903 * 60.00182 * 9 7 2 27 27 H 1.09003 * 109.47116 * 299.99933 * 9 7 2 28 28 H 1.09002 * 109.47209 * 60.00191 * 10 9 7 29 29 H 1.09003 * 109.46906 * 299.99884 * 10 9 7 30 30 H 1.00902 * 111.00261 * 176.04858 * 13 11 10 31 31 H 1.00900 * 110.99955 * 300.00306 * 13 11 10 32 32 H 0.97000 * 119.99708 * 359.97438 * 16 14 11 33 33 H 1.09002 * 109.47391 * 59.99686 * 17 16 14 34 34 H 1.09001 * 109.46813 * 299.99742 * 17 16 14 35 35 H 1.09003 * 109.35947 * 289.33255 * 20 18 17 36 36 H 1.09003 * 109.35847 * 48.90810 * 20 18 17 37 37 H 1.08001 * 117.96529 * 162.84429 * 21 20 18 38 38 H 1.08002 * 117.96184 * 180.46968 * 22 21 20 39 39 H 1.09001 * 109.35878 * 103.10012 * 23 22 21 40 40 H 1.09003 * 109.35762 * 222.82496 * 23 22 21 41 41 H 1.08994 * 109.62801 * 289.72216 * 24 23 22 42 42 H 1.09001 * 109.64408 * 169.10486 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0001 11 6 5.5516 -2.6366 0.0001 12 1 5.9148 -2.0470 0.8419 13 7 6.0413 -2.0513 -1.2551 14 6 6.0539 -4.0520 0.1241 15 8 6.4281 -4.6512 -0.8617 16 7 6.0874 -4.6519 1.3305 17 6 6.5762 -6.0277 1.4511 18 6 6.5093 -6.4662 2.9154 19 1 7.0626 -5.7604 3.5348 20 6 5.0495 -6.5160 3.3713 21 6 4.9478 -7.1919 4.7072 22 6 5.8792 -7.9312 5.2187 23 6 7.1945 -8.2080 4.5513 24 6 7.1113 -7.8694 3.0614 25 1 -0.4850 0.8400 -0.0004 26 1 3.8752 -0.6797 0.8895 27 1 3.8746 -0.6809 -0.8905 28 1 3.6579 -3.1507 -0.8897 29 1 3.6586 -3.1502 0.8904 30 1 7.0478 -1.9808 -1.2528 31 1 5.7178 -2.5803 -2.0511 32 1 5.7885 -4.1725 2.1190 33 1 7.6079 -6.0786 1.1030 34 1 5.9555 -6.6882 0.8457 35 1 4.6604 -5.5008 3.4494 36 1 4.4613 -7.0707 2.6401 37 1 4.0414 -7.0525 5.2777 38 1 5.6982 -8.3769 6.1856 39 1 7.9707 -7.6006 5.0168 40 1 7.4433 -9.2629 4.6668 41 1 6.4749 -8.5956 2.5559 42 1 8.1101 -7.8868 2.6254 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691642442.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:32 Heat of formation + Delta-G solvation = -76.520309 kcal Electronic energy + Delta-G solvation = -20054.890674 eV Core-core repulsion = 17032.587487 eV Total energy + Delta-G solvation = -3022.303187 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.12654 -39.60753 -36.88578 -35.91896 -34.77419 -32.45868 -32.27342 -31.59211 -28.67531 -26.99607 -24.91135 -23.82421 -22.18366 -22.06347 -21.09078 -18.99140 -18.84319 -18.20413 -17.46470 -16.81404 -16.73364 -16.20107 -16.06086 -15.49964 -15.10021 -14.90149 -14.70658 -14.54015 -14.31308 -13.99400 -13.80267 -13.52934 -13.24055 -12.92452 -12.86831 -12.80313 -12.50026 -11.94802 -11.79356 -11.70587 -11.60582 -11.48001 -11.27113 -11.10634 -11.07434 -10.70497 -10.12044 -9.86562 -9.65262 -8.24375 -6.27621 1.41920 1.42327 1.43509 1.52687 1.56339 2.21681 2.42121 3.12332 3.57197 3.61848 3.72246 3.84762 3.92174 4.09197 4.22415 4.28547 4.31127 4.44892 4.50688 4.64756 4.71553 4.72715 4.76152 4.82382 4.88384 5.01482 5.07625 5.11131 5.15563 5.27514 5.39910 5.46216 5.51802 5.66524 5.73666 5.78232 6.07886 6.08220 6.33264 6.45778 6.54793 6.81132 7.16240 7.36930 8.92574 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021843 B = 0.003860 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.553626 B = 7251.295755 C = 8151.220613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.002 3.998 3 Si 0.955 3.045 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.241 1.241 7 C -0.531 4.531 8 H 0.028 0.972 9 C 0.003 3.997 10 C -0.079 4.079 11 C 0.084 3.916 12 H 0.121 0.879 13 N -0.819 5.819 14 C 0.485 3.515 15 O -0.585 6.585 16 N -0.715 5.715 17 C 0.125 3.875 18 C -0.088 4.088 19 H 0.089 0.911 20 C -0.091 4.091 21 C -0.167 4.167 22 C -0.160 4.160 23 C -0.089 4.089 24 C -0.112 4.112 25 H 0.265 0.735 26 H 0.025 0.975 27 H 0.027 0.973 28 H 0.038 0.962 29 H 0.066 0.934 30 H 0.349 0.651 31 H 0.345 0.655 32 H 0.413 0.587 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.062 0.938 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.619 -14.072 10.780 25.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.195 4.195 3 Si 0.778 3.222 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.164 1.164 7 C -0.569 4.569 8 H 0.046 0.954 9 C -0.035 4.035 10 C -0.117 4.117 11 C -0.032 4.032 12 H 0.139 0.861 13 N -0.348 5.348 14 C 0.270 3.730 15 O -0.466 6.466 16 N -0.367 5.367 17 C 0.001 3.999 18 C -0.106 4.106 19 H 0.107 0.893 20 C -0.128 4.128 21 C -0.185 4.185 22 C -0.178 4.178 23 C -0.126 4.126 24 C -0.150 4.150 25 H 0.073 0.927 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.162 0.838 31 H 0.159 0.841 32 H 0.250 0.750 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.121 0.879 38 H 0.129 0.871 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 18.330 -13.750 10.304 25.125 hybrid contribution -0.282 -0.165 0.032 0.328 sum 18.049 -13.915 10.336 25.024 Atomic orbital electron populations 1.70083 1.08409 1.28045 1.53139 1.26026 0.95571 1.03628 0.94226 0.85592 0.79603 0.78002 0.78987 1.19794 1.21312 1.16367 1.21575 0.92564 0.92846 1.49956 0.95403 1.19373 0.92814 0.94001 0.97310 1.21256 0.90877 0.98650 1.00940 1.21677 0.96571 0.88968 0.95991 0.86148 1.59023 1.16530 1.56010 1.03247 1.22393 0.76894 0.90607 0.83060 1.90642 1.50346 1.67216 1.38360 1.46089 1.65270 1.15604 1.09750 1.21449 0.99257 0.82060 0.97145 1.21381 0.96780 0.98730 0.93758 0.89284 1.20537 0.96293 1.00825 0.95180 1.22113 0.99699 0.99413 0.97296 1.22259 0.96043 0.99035 1.00415 1.20480 0.95396 1.02499 0.94254 1.21589 1.01502 0.94940 0.96994 0.92662 0.95692 0.95489 0.94292 0.91562 0.83785 0.84126 0.75007 0.91584 0.92990 0.90902 0.91588 0.87875 0.87141 0.89920 0.89812 0.91948 0.90273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.74 13.96 21.45 0.30 -60.44 16 2 C 0.00 0.09 5.47 84.66 0.46 0.56 16 3 Si 0.95 44.85 27.47 68.60 1.88 46.73 16 4 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.24 -10.29 6.54 99.48 0.65 -9.64 16 7 C -0.53 -30.78 9.66 25.60 0.25 -30.53 16 8 H 0.03 1.78 7.99 -2.91 -0.02 1.75 16 9 C 0.00 0.12 3.93 29.85 0.12 0.23 16 10 C -0.08 -2.97 4.78 30.59 0.15 -2.83 16 11 C 0.08 2.46 3.15 44.17 0.14 2.60 16 12 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 13 N -0.82 -24.33 8.44 -171.80 -1.45 -25.78 16 14 C 0.49 13.90 7.07 87.66 0.62 14.52 16 15 O -0.59 -20.58 16.25 -3.02 -0.05 -20.63 16 16 N -0.72 -15.59 5.35 -463.05 -2.48 -18.07 16 17 C 0.12 2.43 5.07 86.38 0.44 2.87 16 18 C -0.09 -1.29 2.28 -10.66 -0.02 -1.32 16 19 H 0.09 1.19 8.13 -2.39 -0.02 1.17 16 20 C -0.09 -1.55 5.18 29.65 0.15 -1.39 16 21 C -0.17 -2.69 9.80 27.04 0.27 -2.43 16 22 C -0.16 -2.20 9.80 27.04 0.27 -1.93 16 23 C -0.09 -1.00 6.12 29.65 0.18 -0.82 16 24 C -0.11 -1.42 5.31 30.73 0.16 -1.26 16 25 H 0.26 15.70 8.31 -92.71 -0.77 14.92 16 26 H 0.02 1.09 7.20 -2.39 -0.02 1.07 16 27 H 0.03 1.26 7.18 -2.39 -0.02 1.24 16 28 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.35 8.67 9.06 -89.69 -0.81 7.86 16 31 H 0.35 10.89 8.58 -89.69 -0.77 10.12 16 32 H 0.41 7.30 7.76 -92.71 -0.72 6.58 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.05 1.19 8.11 -2.39 -0.02 1.17 16 35 H 0.07 1.25 7.48 -2.39 -0.02 1.23 16 36 H 0.07 1.26 8.08 -2.39 -0.02 1.24 16 37 H 0.10 1.63 8.06 -2.91 -0.02 1.61 16 38 H 0.11 1.30 8.06 -2.91 -0.02 1.27 16 39 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.06 0.88 8.12 -2.39 -0.02 0.86 16 42 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -71.25 338.95 0.04 -71.21 By element: Atomic # 1 Polarization: 30.03 SS G_CDS: -1.34 Total: 28.69 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: 3.17 Total: -21.72 kcal Atomic # 7 Polarization: -100.65 SS G_CDS: -3.63 Total: -104.28 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.05 Total: -20.63 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.73 kcal Total: -71.25 0.04 -71.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691642442.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.306 kcal (2) G-P(sol) polarization free energy of solvation -71.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds