Wall clock time and date at job start Mon Mar 30 2020 05:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86793 * 120.00178 * 2 1 4 4 H 1.48504 * 109.47133 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47154 * 300.00047 * 3 2 1 6 6 H 1.48498 * 109.47363 * 60.00100 * 3 2 1 7 7 C 1.37885 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99773 * 173.24153 * 7 2 1 9 9 C 1.50701 * 120.00097 * 353.24665 * 7 2 1 10 10 C 1.52994 * 115.55311 * 85.14434 * 9 7 2 11 11 N 1.46501 * 109.46973 * 65.16522 * 10 9 7 12 12 C 1.34784 * 119.99972 * 182.49856 * 11 10 9 13 13 O 1.21286 * 119.99854 * 0.02562 * 12 11 10 14 14 C 1.50694 * 120.00158 * 180.02562 * 12 11 10 15 15 C 1.52998 * 109.47510 * 179.97438 * 14 12 11 16 16 H 1.09005 * 109.46474 * 305.00826 * 15 14 12 17 17 C 1.53033 * 109.46806 * 185.02093 * 15 14 12 18 18 C 1.53110 * 109.27991 * 180.79724 * 17 15 14 19 19 C 1.53119 * 109.15481 * 57.67630 * 18 17 15 20 20 C 1.53040 * 109.27171 * 302.33731 * 19 18 17 21 21 N 1.46842 * 109.52574 * 59.18178 * 20 19 18 22 22 C 1.53001 * 117.49542 * 230.81403 * 9 7 2 23 23 C 1.53004 * 117.49545 * 299.47400 * 9 7 2 24 24 H 0.96996 * 119.99905 * 5.03622 * 1 2 3 25 25 H 1.08994 * 109.47364 * 185.17293 * 10 9 7 26 26 H 1.09002 * 109.47177 * 305.16977 * 10 9 7 27 27 H 0.96994 * 120.00110 * 2.51019 * 11 10 9 28 28 H 1.08998 * 109.47348 * 300.00704 * 14 12 11 29 29 H 1.09008 * 109.47031 * 60.00379 * 14 12 11 30 30 H 1.08994 * 109.50316 * 300.75233 * 17 15 14 31 31 H 1.09003 * 109.49924 * 60.86406 * 17 15 14 32 32 H 1.09001 * 109.53283 * 297.76684 * 18 17 15 33 33 H 1.09002 * 109.57734 * 177.60525 * 18 17 15 34 34 H 1.08997 * 109.50471 * 182.40331 * 19 18 17 35 35 H 1.08997 * 109.53822 * 62.29566 * 19 18 17 36 36 H 1.08995 * 109.46727 * 299.15936 * 20 19 18 37 37 H 1.09002 * 109.45845 * 179.19559 * 20 19 18 38 38 H 1.00900 * 111.00313 * 174.15535 * 21 20 19 39 39 H 1.09001 * 117.49940 * 215.00080 * 22 9 7 40 40 H 1.08997 * 117.49916 * 0.02731 * 22 9 7 41 41 H 1.08999 * 117.49860 * 359.97438 * 23 9 7 42 42 H 1.08992 * 117.49841 * 144.99652 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0788 -1.1974 -0.1095 9 6 1.2588 -2.4946 0.1546 10 6 0.6913 -3.0870 -1.1369 11 7 1.7926 -3.4615 -2.0274 12 6 1.5295 -3.9609 -3.2514 13 8 0.3810 -4.0997 -3.6156 14 6 2.6623 -4.3467 -4.1673 15 6 2.0945 -4.8818 -5.4834 16 1 1.4054 -5.7004 -5.2756 17 6 3.2388 -5.3895 -6.3635 18 6 2.6679 -5.9055 -7.6872 19 6 1.8874 -4.7794 -8.3707 20 6 0.7822 -4.2891 -7.4324 21 7 1.3794 -3.8055 -6.1811 22 6 1.7565 -3.4722 1.2212 23 6 0.4533 -2.6992 1.4393 24 1 -0.4850 0.8368 -0.0737 25 1 0.0979 -3.9704 -0.9014 26 1 0.0611 -2.3468 -1.6299 27 1 2.7111 -3.3503 -1.7362 28 1 3.2819 -3.4725 -4.3671 29 1 3.2667 -5.1194 -3.6920 30 1 3.9355 -4.5748 -6.5605 31 1 3.7598 -6.1988 -5.8519 32 1 2.0009 -6.7456 -7.4935 33 1 3.4826 -6.2292 -8.3349 34 1 1.4426 -5.1527 -9.2931 35 1 2.5626 -3.9549 -8.5998 36 1 0.0992 -5.1103 -7.2153 37 1 0.2337 -3.4775 -7.9105 38 1 0.6806 -3.3893 -5.5841 39 1 1.6796 -4.5373 1.0028 40 1 2.6229 -3.1745 1.8117 41 1 0.4631 -1.8933 2.1731 42 1 -0.4809 -3.2556 1.3643 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694396546.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:13 Heat of formation + Delta-G solvation = -36.329581 kcal Electronic energy + Delta-G solvation = -20569.483791 eV Core-core repulsion = 17548.923405 eV Total energy + Delta-G solvation = -3020.560386 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.60431 -38.05664 -36.64402 -33.30006 -32.61470 -31.98465 -31.73152 -28.12968 -25.96512 -24.98628 -23.48000 -21.91808 -21.20185 -19.70795 -19.62831 -19.18964 -16.66484 -16.41583 -15.83534 -15.47509 -14.95079 -14.68441 -14.25492 -14.23755 -13.94010 -13.51440 -13.30446 -12.99002 -12.77409 -12.34925 -12.17388 -11.95266 -11.59340 -11.41958 -11.02825 -11.00376 -10.91148 -10.83942 -10.53606 -10.51386 -10.36755 -10.29193 -9.67226 -9.25488 -8.98340 -8.51329 -8.32520 -8.23017 -8.06243 -6.08981 -4.17501 3.21246 3.24990 3.34126 3.36095 3.87602 4.33751 4.35170 4.77382 4.82728 4.91424 5.12334 5.19509 5.23835 5.30516 5.42196 5.51588 5.56725 5.62899 5.77463 5.82726 5.85629 5.90813 5.96526 6.02027 6.10086 6.17608 6.31211 6.37374 6.44892 6.53913 6.66424 6.86965 7.06763 7.23768 7.26520 7.41559 7.47018 7.67381 7.80809 8.29330 8.32471 8.82936 8.88565 9.49566 10.98954 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.023695 B = 0.004384 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.418788 B = 6384.631220 C = 6900.647203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.500 4.500 8 H 0.061 0.939 9 C 0.028 3.972 10 C 0.162 3.838 11 N -0.701 5.701 12 C 0.506 3.494 13 O -0.565 6.565 14 C -0.139 4.139 15 C 0.106 3.894 16 H 0.043 0.957 17 C -0.113 4.113 18 C -0.120 4.120 19 C -0.118 4.118 20 C 0.059 3.941 21 N -0.687 5.687 22 C -0.211 4.211 23 C -0.149 4.149 24 H 0.261 0.739 25 H 0.034 0.966 26 H 0.074 0.926 27 H 0.400 0.600 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.027 0.973 37 H 0.070 0.930 38 H 0.360 0.640 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.743 -9.768 -10.910 15.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.538 4.538 8 H 0.079 0.921 9 C 0.027 3.973 10 C 0.039 3.961 11 N -0.349 5.349 12 C 0.292 3.708 13 O -0.446 6.446 14 C -0.180 4.180 15 C -0.005 4.005 16 H 0.061 0.939 17 C -0.151 4.151 18 C -0.158 4.158 19 C -0.156 4.156 20 C -0.070 4.070 21 N -0.324 5.324 22 C -0.248 4.248 23 C -0.187 4.187 24 H 0.071 0.929 25 H 0.052 0.948 26 H 0.092 0.908 27 H 0.234 0.766 28 H 0.119 0.881 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.088 0.912 38 H 0.183 0.817 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.296 -9.473 -11.357 15.709 hybrid contribution 0.028 0.546 0.592 0.806 sum 5.324 -8.927 -10.765 14.964 Atomic orbital electron populations 1.69981 1.05921 1.26848 1.48279 1.24984 0.94792 0.98979 0.94254 0.86577 0.80193 0.83829 0.77652 1.19695 1.20987 1.20964 1.20372 0.92915 0.88584 1.51896 0.92130 1.19047 0.98484 0.93966 0.85773 1.20988 0.87613 0.96787 0.90675 1.45988 1.11306 1.62434 1.15147 1.20574 0.90312 0.77577 0.82367 1.90586 1.22686 1.56170 1.75115 1.21791 0.97948 1.03364 0.94871 1.21124 0.95017 0.92922 0.91388 0.93884 1.21646 0.97555 1.00472 0.95457 1.21552 0.99545 0.97927 0.96731 1.21601 0.97997 0.98440 0.97520 1.21834 0.95269 0.98530 0.91401 1.60439 1.33751 1.30873 1.07334 1.23027 0.98607 0.95617 1.07598 1.22494 0.92331 1.01090 1.02793 0.92885 0.94803 0.90773 0.76633 0.88146 0.88918 0.91051 0.91774 0.92441 0.92051 0.92103 0.91267 0.95514 0.91155 0.81745 0.91692 0.90334 0.89833 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.25 12.93 55.43 0.72 -23.53 16 2 C 0.07 1.96 5.39 -17.82 -0.10 1.86 16 3 Si 0.89 20.55 29.55 -169.99 -5.02 15.53 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.50 -12.78 8.68 -34.44 -0.30 -13.08 16 8 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 9 C 0.03 0.65 1.36 -155.66 -0.21 0.44 16 10 C 0.16 3.65 5.50 -4.04 -0.02 3.63 16 11 N -0.70 -13.26 5.47 -60.30 -0.33 -13.59 16 12 C 0.51 9.08 7.54 -10.99 -0.08 9.00 16 13 O -0.56 -11.93 14.19 5.55 0.08 -11.86 16 14 C -0.14 -1.87 5.38 -27.89 -0.15 -2.02 16 15 C 0.11 1.41 2.10 -67.72 -0.14 1.27 16 16 H 0.04 0.64 7.96 -51.93 -0.41 0.23 16 17 C -0.11 -1.20 5.37 -26.66 -0.14 -1.34 16 18 C -0.12 -1.17 6.00 -26.61 -0.16 -1.33 16 19 C -0.12 -1.21 6.09 -26.65 -0.16 -1.37 16 20 C 0.06 0.74 6.55 -3.83 -0.03 0.71 16 21 N -0.69 -10.01 6.50 -106.76 -0.69 -10.71 16 22 C -0.21 -4.32 9.96 -26.69 -0.27 -4.59 16 23 C -0.15 -3.38 9.44 -26.69 -0.25 -3.63 16 24 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 25 H 0.03 0.75 8.09 -51.93 -0.42 0.33 16 26 H 0.07 1.93 8.14 -51.93 -0.42 1.51 16 27 H 0.40 6.87 8.42 -40.82 -0.34 6.52 16 28 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.36 6.13 6.52 -39.29 -0.26 5.88 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 41 H 0.08 2.02 8.14 -51.93 -0.42 1.59 16 42 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 338.58 15.07 5.10 5.10 Total: -1.00 -28.50 338.58 -9.48 -37.98 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -7.32 Total: 11.52 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -2.01 Total: -10.45 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: -0.31 Total: -47.83 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.08 Total: -11.86 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.50 -9.48 -37.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694396546.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.650 kcal (2) G-P(sol) polarization free energy of solvation -28.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds