Wall clock time and date at job start Mon Mar 30 2020 05:28:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31509 * 1
3 3 Si 1.86793 * 120.00178 * 2 1
4 4 H 1.48504 * 109.47133 * 179.97438 * 3 2 1
5 5 H 1.48503 * 109.47154 * 300.00047 * 3 2 1
6 6 H 1.48498 * 109.47363 * 60.00100 * 3 2 1
7 7 C 1.37885 * 119.99802 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99773 * 173.24153 * 7 2 1
9 9 C 1.50701 * 120.00097 * 353.24665 * 7 2 1
10 10 C 1.52994 * 115.55311 * 85.14434 * 9 7 2
11 11 N 1.46501 * 109.46973 * 65.16522 * 10 9 7
12 12 C 1.34784 * 119.99972 * 182.49856 * 11 10 9
13 13 O 1.21286 * 119.99854 * 0.02562 * 12 11 10
14 14 C 1.50694 * 120.00158 * 180.02562 * 12 11 10
15 15 C 1.52998 * 109.47510 * 179.97438 * 14 12 11
16 16 H 1.09005 * 109.46474 * 305.00826 * 15 14 12
17 17 C 1.53033 * 109.46806 * 185.02093 * 15 14 12
18 18 C 1.53110 * 109.27991 * 180.79724 * 17 15 14
19 19 C 1.53119 * 109.15481 * 57.67630 * 18 17 15
20 20 C 1.53040 * 109.27171 * 302.33731 * 19 18 17
21 21 N 1.46842 * 109.52574 * 59.18178 * 20 19 18
22 22 C 1.53001 * 117.49542 * 230.81403 * 9 7 2
23 23 C 1.53004 * 117.49545 * 299.47400 * 9 7 2
24 24 H 0.96996 * 119.99905 * 5.03622 * 1 2 3
25 25 H 1.08994 * 109.47364 * 185.17293 * 10 9 7
26 26 H 1.09002 * 109.47177 * 305.16977 * 10 9 7
27 27 H 0.96994 * 120.00110 * 2.51019 * 11 10 9
28 28 H 1.08998 * 109.47348 * 300.00704 * 14 12 11
29 29 H 1.09008 * 109.47031 * 60.00379 * 14 12 11
30 30 H 1.08994 * 109.50316 * 300.75233 * 17 15 14
31 31 H 1.09003 * 109.49924 * 60.86406 * 17 15 14
32 32 H 1.09001 * 109.53283 * 297.76684 * 18 17 15
33 33 H 1.09002 * 109.57734 * 177.60525 * 18 17 15
34 34 H 1.08997 * 109.50471 * 182.40331 * 19 18 17
35 35 H 1.08997 * 109.53822 * 62.29566 * 19 18 17
36 36 H 1.08995 * 109.46727 * 299.15936 * 20 19 18
37 37 H 1.09002 * 109.45845 * 179.19559 * 20 19 18
38 38 H 1.00900 * 111.00313 * 174.15535 * 21 20 19
39 39 H 1.09001 * 117.49940 * 215.00080 * 22 9 7
40 40 H 1.08997 * 117.49916 * 0.02731 * 22 9 7
41 41 H 1.08999 * 117.49860 * 359.97438 * 23 9 7
42 42 H 1.08992 * 117.49841 * 144.99652 * 23 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6176 0.0000
4 1 3.7091 1.3462 0.0006
5 1 1.8904 2.3964 -1.2125
6 1 1.8904 2.3964 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0788 -1.1974 -0.1095
9 6 1.2588 -2.4946 0.1546
10 6 0.6913 -3.0870 -1.1369
11 7 1.7926 -3.4615 -2.0274
12 6 1.5295 -3.9609 -3.2514
13 8 0.3810 -4.0997 -3.6156
14 6 2.6623 -4.3467 -4.1673
15 6 2.0945 -4.8818 -5.4834
16 1 1.4054 -5.7004 -5.2756
17 6 3.2388 -5.3895 -6.3635
18 6 2.6679 -5.9055 -7.6872
19 6 1.8874 -4.7794 -8.3707
20 6 0.7822 -4.2891 -7.4324
21 7 1.3794 -3.8055 -6.1811
22 6 1.7565 -3.4722 1.2212
23 6 0.4533 -2.6992 1.4393
24 1 -0.4850 0.8368 -0.0737
25 1 0.0979 -3.9704 -0.9014
26 1 0.0611 -2.3468 -1.6299
27 1 2.7111 -3.3503 -1.7362
28 1 3.2819 -3.4725 -4.3671
29 1 3.2667 -5.1194 -3.6920
30 1 3.9355 -4.5748 -6.5605
31 1 3.7598 -6.1988 -5.8519
32 1 2.0009 -6.7456 -7.4935
33 1 3.4826 -6.2292 -8.3349
34 1 1.4426 -5.1527 -9.2931
35 1 2.5626 -3.9549 -8.5998
36 1 0.0992 -5.1103 -7.2153
37 1 0.2337 -3.4775 -7.9105
38 1 0.6806 -3.3893 -5.5841
39 1 1.6796 -4.5373 1.0028
40 1 2.6229 -3.1745 1.8117
41 1 0.4631 -1.8933 2.1731
42 1 -0.4809 -3.2556 1.3643
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000694396546.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:28:13
Heat of formation + Delta-G solvation = -36.329581 kcal
Electronic energy + Delta-G solvation = -20569.483791 eV
Core-core repulsion = 17548.923405 eV
Total energy + Delta-G solvation = -3020.560386 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-39.60431 -38.05664 -36.64402 -33.30006 -32.61470 -31.98465 -31.73152 -28.12968
-25.96512 -24.98628 -23.48000 -21.91808 -21.20185 -19.70795 -19.62831 -19.18964
-16.66484 -16.41583 -15.83534 -15.47509 -14.95079 -14.68441 -14.25492 -14.23755
-13.94010 -13.51440 -13.30446 -12.99002 -12.77409 -12.34925 -12.17388 -11.95266
-11.59340 -11.41958 -11.02825 -11.00376 -10.91148 -10.83942 -10.53606 -10.51386
-10.36755 -10.29193 -9.67226 -9.25488 -8.98340 -8.51329 -8.32520 -8.23017
-8.06243 -6.08981 -4.17501 3.21246 3.24990 3.34126 3.36095 3.87602
4.33751 4.35170 4.77382 4.82728 4.91424 5.12334 5.19509 5.23835
5.30516 5.42196 5.51588 5.56725 5.62899 5.77463 5.82726 5.85629
5.90813 5.96526 6.02027 6.10086 6.17608 6.31211 6.37374 6.44892
6.53913 6.66424 6.86965 7.06763 7.23768 7.26520 7.41559 7.47018
7.67381 7.80809 8.29330 8.32471 8.82936 8.88565 9.49566 10.98954
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.023695 B = 0.004384 C = 0.004057
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1181.418788 B = 6384.631220 C = 6900.647203
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.874 5.874
2 C 0.074 3.926
3 Si 0.890 3.110
4 H -0.272 1.272
5 H -0.284 1.284
6 H -0.284 1.284
7 C -0.500 4.500
8 H 0.061 0.939
9 C 0.028 3.972
10 C 0.162 3.838
11 N -0.701 5.701
12 C 0.506 3.494
13 O -0.565 6.565
14 C -0.139 4.139
15 C 0.106 3.894
16 H 0.043 0.957
17 C -0.113 4.113
18 C -0.120 4.120
19 C -0.118 4.118
20 C 0.059 3.941
21 N -0.687 5.687
22 C -0.211 4.211
23 C -0.149 4.149
24 H 0.261 0.739
25 H 0.034 0.966
26 H 0.074 0.926
27 H 0.400 0.600
28 H 0.100 0.900
29 H 0.093 0.907
30 H 0.071 0.929
31 H 0.064 0.936
32 H 0.057 0.943
33 H 0.061 0.939
34 H 0.060 0.940
35 H 0.069 0.931
36 H 0.027 0.973
37 H 0.070 0.930
38 H 0.360 0.640
39 H 0.065 0.935
40 H 0.078 0.922
41 H 0.083 0.917
42 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.743 -9.768 -10.910 15.730
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.510 5.510
2 C -0.130 4.130
3 Si 0.717 3.283
4 H -0.197 1.197
5 H -0.210 1.210
6 H -0.210 1.210
7 C -0.538 4.538
8 H 0.079 0.921
9 C 0.027 3.973
10 C 0.039 3.961
11 N -0.349 5.349
12 C 0.292 3.708
13 O -0.446 6.446
14 C -0.180 4.180
15 C -0.005 4.005
16 H 0.061 0.939
17 C -0.151 4.151
18 C -0.158 4.158
19 C -0.156 4.156
20 C -0.070 4.070
21 N -0.324 5.324
22 C -0.248 4.248
23 C -0.187 4.187
24 H 0.071 0.929
25 H 0.052 0.948
26 H 0.092 0.908
27 H 0.234 0.766
28 H 0.119 0.881
29 H 0.111 0.889
30 H 0.089 0.911
31 H 0.082 0.918
32 H 0.076 0.924
33 H 0.079 0.921
34 H 0.079 0.921
35 H 0.087 0.913
36 H 0.045 0.955
37 H 0.088 0.912
38 H 0.183 0.817
39 H 0.083 0.917
40 H 0.097 0.903
41 H 0.102 0.898
42 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges 5.296 -9.473 -11.357 15.709
hybrid contribution 0.028 0.546 0.592 0.806
sum 5.324 -8.927 -10.765 14.964
Atomic orbital electron populations
1.69981 1.05921 1.26848 1.48279 1.24984 0.94792 0.98979 0.94254
0.86577 0.80193 0.83829 0.77652 1.19695 1.20987 1.20964 1.20372
0.92915 0.88584 1.51896 0.92130 1.19047 0.98484 0.93966 0.85773
1.20988 0.87613 0.96787 0.90675 1.45988 1.11306 1.62434 1.15147
1.20574 0.90312 0.77577 0.82367 1.90586 1.22686 1.56170 1.75115
1.21791 0.97948 1.03364 0.94871 1.21124 0.95017 0.92922 0.91388
0.93884 1.21646 0.97555 1.00472 0.95457 1.21552 0.99545 0.97927
0.96731 1.21601 0.97997 0.98440 0.97520 1.21834 0.95269 0.98530
0.91401 1.60439 1.33751 1.30873 1.07334 1.23027 0.98607 0.95617
1.07598 1.22494 0.92331 1.01090 1.02793 0.92885 0.94803 0.90773
0.76633 0.88146 0.88918 0.91051 0.91774 0.92441 0.92051 0.92103
0.91267 0.95514 0.91155 0.81745 0.91692 0.90334 0.89833 0.91712
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -24.25 12.93 55.43 0.72 -23.53 16
2 C 0.07 1.96 5.39 -17.82 -0.10 1.86 16
3 Si 0.89 20.55 29.55 -169.99 -5.02 15.53 16
4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16
5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
7 C -0.50 -12.78 8.68 -34.44 -0.30 -13.08 16
8 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16
9 C 0.03 0.65 1.36 -155.66 -0.21 0.44 16
10 C 0.16 3.65 5.50 -4.04 -0.02 3.63 16
11 N -0.70 -13.26 5.47 -60.30 -0.33 -13.59 16
12 C 0.51 9.08 7.54 -10.99 -0.08 9.00 16
13 O -0.56 -11.93 14.19 5.55 0.08 -11.86 16
14 C -0.14 -1.87 5.38 -27.89 -0.15 -2.02 16
15 C 0.11 1.41 2.10 -67.72 -0.14 1.27 16
16 H 0.04 0.64 7.96 -51.93 -0.41 0.23 16
17 C -0.11 -1.20 5.37 -26.66 -0.14 -1.34 16
18 C -0.12 -1.17 6.00 -26.61 -0.16 -1.33 16
19 C -0.12 -1.21 6.09 -26.65 -0.16 -1.37 16
20 C 0.06 0.74 6.55 -3.83 -0.03 0.71 16
21 N -0.69 -10.01 6.50 -106.76 -0.69 -10.71 16
22 C -0.21 -4.32 9.96 -26.69 -0.27 -4.59 16
23 C -0.15 -3.38 9.44 -26.69 -0.25 -3.63 16
24 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16
25 H 0.03 0.75 8.09 -51.93 -0.42 0.33 16
26 H 0.07 1.93 8.14 -51.93 -0.42 1.51 16
27 H 0.40 6.87 8.42 -40.82 -0.34 6.52 16
28 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16
29 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16
30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16
32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16
33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
36 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16
37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
38 H 0.36 6.13 6.52 -39.29 -0.26 5.88 16
39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16
40 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16
41 H 0.08 2.02 8.14 -51.93 -0.42 1.59 16
42 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16
LS Contribution 338.58 15.07 5.10 5.10
Total: -1.00 -28.50 338.58 -9.48 -37.98
By element:
Atomic # 1 Polarization: 18.84 SS G_CDS: -7.32 Total: 11.52 kcal
Atomic # 6 Polarization: -8.44 SS G_CDS: -2.01 Total: -10.45 kcal
Atomic # 7 Polarization: -47.52 SS G_CDS: -0.31 Total: -47.83 kcal
Atomic # 8 Polarization: -11.93 SS G_CDS: 0.08 Total: -11.86 kcal
Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal
Total LS contribution 5.10 Total: 5.10 kcal
Total: -28.50 -9.48 -37.98 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000694396546.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.650 kcal
(2) G-P(sol) polarization free energy of solvation -28.498 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.848 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.481 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.979 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.330 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds