Wall clock time and date at job start Mon Mar 30 2020 05:28:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31509 * 1
3 3 Si 1.86793 * 120.00178 * 2 1
4 4 H 1.48504 * 109.47133 * 179.97438 * 3 2 1
5 5 H 1.48503 * 109.47154 * 300.00047 * 3 2 1
6 6 H 1.48498 * 109.47363 * 60.00100 * 3 2 1
7 7 C 1.37885 * 119.99802 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99773 * 173.24153 * 7 2 1
9 9 C 1.50701 * 120.00097 * 353.24665 * 7 2 1
10 10 C 1.52994 * 115.55311 * 85.14434 * 9 7 2
11 11 N 1.46501 * 109.46973 * 65.16522 * 10 9 7
12 12 C 1.34784 * 119.99972 * 182.49856 * 11 10 9
13 13 O 1.21286 * 119.99854 * 0.02562 * 12 11 10
14 14 C 1.50694 * 120.00158 * 180.02562 * 12 11 10
15 15 C 1.52998 * 109.47510 * 179.97438 * 14 12 11
16 16 H 1.09005 * 109.46474 * 305.00826 * 15 14 12
17 17 C 1.53033 * 109.46806 * 185.02093 * 15 14 12
18 18 C 1.53110 * 109.27991 * 180.79724 * 17 15 14
19 19 C 1.53119 * 109.15481 * 57.67630 * 18 17 15
20 20 C 1.53040 * 109.27171 * 302.33731 * 19 18 17
21 21 N 1.46842 * 109.52574 * 59.18178 * 20 19 18
22 22 C 1.53001 * 117.49542 * 230.81403 * 9 7 2
23 23 C 1.53004 * 117.49545 * 299.47400 * 9 7 2
24 24 H 0.96996 * 119.99905 * 5.03622 * 1 2 3
25 25 H 1.08994 * 109.47364 * 185.17293 * 10 9 7
26 26 H 1.09002 * 109.47177 * 305.16977 * 10 9 7
27 27 H 0.96994 * 120.00110 * 2.51019 * 11 10 9
28 28 H 1.08998 * 109.47348 * 300.00704 * 14 12 11
29 29 H 1.09008 * 109.47031 * 60.00379 * 14 12 11
30 30 H 1.08994 * 109.50316 * 300.75233 * 17 15 14
31 31 H 1.09003 * 109.49924 * 60.86406 * 17 15 14
32 32 H 1.09001 * 109.53283 * 297.76684 * 18 17 15
33 33 H 1.09002 * 109.57734 * 177.60525 * 18 17 15
34 34 H 1.08997 * 109.50471 * 182.40331 * 19 18 17
35 35 H 1.08997 * 109.53822 * 62.29566 * 19 18 17
36 36 H 1.08995 * 109.46727 * 299.15936 * 20 19 18
37 37 H 1.09002 * 109.45845 * 179.19559 * 20 19 18
38 38 H 1.00900 * 111.00313 * 174.15535 * 21 20 19
39 39 H 1.09001 * 117.49940 * 215.00080 * 22 9 7
40 40 H 1.08997 * 117.49916 * 0.02731 * 22 9 7
41 41 H 1.08999 * 117.49860 * 359.97438 * 23 9 7
42 42 H 1.08992 * 117.49841 * 144.99652 * 23 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6176 0.0000
4 1 3.7091 1.3462 0.0006
5 1 1.8904 2.3964 -1.2125
6 1 1.8904 2.3964 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0788 -1.1974 -0.1095
9 6 1.2588 -2.4946 0.1546
10 6 0.6913 -3.0870 -1.1369
11 7 1.7926 -3.4615 -2.0274
12 6 1.5295 -3.9609 -3.2514
13 8 0.3810 -4.0997 -3.6156
14 6 2.6623 -4.3467 -4.1673
15 6 2.0945 -4.8818 -5.4834
16 1 1.4054 -5.7004 -5.2756
17 6 3.2388 -5.3895 -6.3635
18 6 2.6679 -5.9055 -7.6872
19 6 1.8874 -4.7794 -8.3707
20 6 0.7822 -4.2891 -7.4324
21 7 1.3794 -3.8055 -6.1811
22 6 1.7565 -3.4722 1.2212
23 6 0.4533 -2.6992 1.4393
24 1 -0.4850 0.8368 -0.0737
25 1 0.0979 -3.9704 -0.9014
26 1 0.0611 -2.3468 -1.6299
27 1 2.7111 -3.3503 -1.7362
28 1 3.2819 -3.4725 -4.3671
29 1 3.2667 -5.1194 -3.6920
30 1 3.9355 -4.5748 -6.5605
31 1 3.7598 -6.1988 -5.8519
32 1 2.0009 -6.7456 -7.4935
33 1 3.4826 -6.2292 -8.3349
34 1 1.4426 -5.1527 -9.2931
35 1 2.5626 -3.9549 -8.5998
36 1 0.0992 -5.1103 -7.2153
37 1 0.2337 -3.4775 -7.9105
38 1 0.6806 -3.3893 -5.5841
39 1 1.6796 -4.5373 1.0028
40 1 2.6229 -3.1745 1.8117
41 1 0.4631 -1.8933 2.1731
42 1 -0.4809 -3.2556 1.3643
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000694396546.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:28:13
Heat of formation + Delta-G solvation = -54.839610 kcal
Electronic energy + Delta-G solvation = -20570.286446 eV
Core-core repulsion = 17548.923405 eV
Total energy + Delta-G solvation = -3021.363042 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-40.95110 -39.26291 -38.33203 -34.91996 -33.97430 -33.62975 -32.68630 -29.38130
-27.74581 -26.67747 -24.41859 -23.09142 -22.82774 -21.33769 -20.86713 -20.53525
-18.33230 -17.72369 -17.19037 -16.79337 -16.53279 -16.46378 -15.72935 -15.38236
-15.12767 -14.82820 -14.60822 -14.30893 -13.93905 -13.70767 -13.51591 -13.46471
-13.00970 -12.93263 -12.84154 -12.60416 -12.32614 -12.04891 -11.97465 -11.62810
-11.48745 -11.44355 -11.25319 -10.86006 -10.75764 -10.45647 -10.04334 -9.80630
-9.33283 -8.10021 -6.22784 1.41225 1.45065 1.54166 1.77916 2.40397
2.46114 3.18715 3.29531 3.49210 3.79334 3.90769 4.02782 4.12692
4.25599 4.32636 4.41130 4.50710 4.55703 4.61637 4.65071 4.66674
4.73090 4.85417 4.88746 4.98140 4.99280 5.06694 5.08376 5.13955
5.25787 5.26869 5.31039 5.52229 5.59103 5.61667 5.69929 5.78990
6.21520 6.36829 6.41211 6.80296 6.85881 7.43454 7.47123 8.97751
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.023695 B = 0.004384 C = 0.004057
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1181.418788 B = 6384.631220 C = 6900.647203
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.909 5.909
2 C 0.024 3.976
3 Si 0.949 3.051
4 H -0.260 1.260
5 H -0.288 1.288
6 H -0.285 1.285
7 C -0.502 4.502
8 H 0.065 0.935
9 C 0.005 3.995
10 C 0.179 3.821
11 N -0.698 5.698
12 C 0.501 3.499
13 O -0.600 6.600
14 C -0.128 4.128
15 C 0.103 3.897
16 H 0.023 0.977
17 C -0.108 4.108
18 C -0.120 4.120
19 C -0.113 4.113
20 C 0.054 3.946
21 N -0.697 5.697
22 C -0.175 4.175
23 C -0.163 4.163
24 H 0.258 0.742
25 H 0.032 0.968
26 H 0.028 0.972
27 H 0.411 0.589
28 H 0.112 0.888
29 H 0.127 0.873
30 H 0.074 0.926
31 H 0.085 0.915
32 H 0.054 0.946
33 H 0.083 0.917
34 H 0.078 0.922
35 H 0.068 0.932
36 H 0.017 0.983
37 H 0.070 0.930
38 H 0.340 0.660
39 H 0.090 0.910
40 H 0.087 0.913
41 H 0.062 0.938
42 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.352 -10.942 -11.667 18.044
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.547 5.547
2 C -0.176 4.176
3 Si 0.775 3.225
4 H -0.184 1.184
5 H -0.215 1.215
6 H -0.211 1.211
7 C -0.540 4.540
8 H 0.083 0.917
9 C 0.005 3.995
10 C 0.055 3.945
11 N -0.347 5.347
12 C 0.290 3.710
13 O -0.483 6.483
14 C -0.167 4.167
15 C -0.007 4.007
16 H 0.041 0.959
17 C -0.146 4.146
18 C -0.158 4.158
19 C -0.151 4.151
20 C -0.075 4.075
21 N -0.331 5.331
22 C -0.212 4.212
23 C -0.201 4.201
24 H 0.067 0.933
25 H 0.050 0.950
26 H 0.046 0.954
27 H 0.246 0.754
28 H 0.130 0.870
29 H 0.145 0.855
30 H 0.093 0.907
31 H 0.103 0.897
32 H 0.073 0.927
33 H 0.101 0.899
34 H 0.096 0.904
35 H 0.086 0.914
36 H 0.035 0.965
37 H 0.089 0.911
38 H 0.160 0.840
39 H 0.108 0.892
40 H 0.105 0.895
41 H 0.081 0.919
42 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 7.957 -10.665 -12.125 18.002
hybrid contribution -0.827 0.879 0.815 1.456
sum 7.130 -9.787 -11.310 16.569
Atomic orbital electron populations
1.70109 1.07334 1.27213 1.50019 1.25700 0.95415 1.02097 0.94410
0.85651 0.79612 0.80165 0.77075 1.18380 1.21478 1.21149 1.20697
0.93211 0.89554 1.50541 0.91724 1.19070 0.99560 0.94542 0.86355
1.20515 0.88136 0.95267 0.90601 1.45888 1.10880 1.62665 1.15279
1.21444 0.91102 0.76315 0.82166 1.90577 1.24733 1.57331 1.75652
1.21834 0.96243 1.04804 0.93857 1.21242 0.95590 0.91904 0.91978
0.95892 1.21641 0.96338 1.01162 0.95439 1.21581 1.00085 0.97466
0.96638 1.21590 0.97248 0.98683 0.97595 1.21956 0.96163 0.98267
0.91144 1.60556 1.33253 1.31591 1.07683 1.23014 0.97200 0.96281
1.04674 1.22435 0.93906 1.01477 1.02274 0.93301 0.94966 0.95402
0.75377 0.87031 0.85455 0.90731 0.89687 0.92680 0.89889 0.90390
0.91366 0.96494 0.91117 0.83989 0.89182 0.89458 0.91911 0.91275
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -51.73 12.93 21.45 0.28 -51.46 16
2 C 0.02 1.29 5.39 84.66 0.46 1.75 16
3 Si 0.95 42.29 29.55 68.60 2.03 44.32 16
4 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16
5 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16
6 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16
7 C -0.50 -25.46 8.68 25.60 0.22 -25.24 16
8 H 0.06 3.16 7.82 -2.91 -0.02 3.13 16
9 C 0.01 0.25 1.36 -52.93 -0.07 0.18 16
10 C 0.18 8.17 5.50 86.38 0.48 8.65 16
11 N -0.70 -25.96 5.47 -463.06 -2.53 -28.49 16
12 C 0.50 17.78 7.54 87.65 0.66 18.44 16
13 O -0.60 -25.97 14.19 -3.05 -0.04 -26.01 16
14 C -0.13 -3.15 5.38 29.85 0.16 -2.99 16
15 C 0.10 2.61 2.10 44.93 0.09 2.71 16
16 H 0.02 0.68 7.96 -2.38 -0.02 0.66 16
17 C -0.11 -1.97 5.37 30.64 0.16 -1.80 16
18 C -0.12 -2.02 6.00 30.67 0.18 -1.83 16
19 C -0.11 -2.11 6.09 30.65 0.19 -1.92 16
20 C 0.05 1.32 6.55 86.33 0.57 1.89 16
21 N -0.70 -20.15 6.50 -491.68 -3.20 -23.35 16
22 C -0.17 -6.78 9.96 30.62 0.30 -6.48 16
23 C -0.16 -7.38 9.44 30.62 0.29 -7.09 16
24 H 0.26 14.19 8.32 -92.71 -0.77 13.42 16
25 H 0.03 1.45 8.09 -2.39 -0.02 1.43 16
26 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16
27 H 0.41 13.38 8.42 -92.71 -0.78 12.60 16
28 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16
29 H 0.13 2.29 8.14 -2.38 -0.02 2.27 16
30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16
31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16
32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16
33 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16
34 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16
35 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16
36 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16
37 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16
38 H 0.34 11.96 6.52 -89.69 -0.58 11.38 16
39 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16
40 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16
41 H 0.06 3.08 8.14 -2.39 -0.02 3.06 16
42 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16
Total: -1.00 -62.80 338.58 -0.14 -62.94
By element:
Atomic # 1 Polarization: 36.15 SS G_CDS: -0.37 Total: 35.78 kcal
Atomic # 6 Polarization: -17.43 SS G_CDS: 3.69 Total: -13.74 kcal
Atomic # 7 Polarization: -97.84 SS G_CDS: -5.45 Total: -103.29 kcal
Atomic # 8 Polarization: -25.97 SS G_CDS: -0.04 Total: -26.01 kcal
Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal
Total: -62.80 -0.14 -62.94 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000694396546.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.102 kcal
(2) G-P(sol) polarization free energy of solvation -62.799 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.697 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.143 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.942 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.840 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds