Wall clock time and date at job start Mon Mar 30 2020 05:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86793 * 120.00178 * 2 1 4 4 H 1.48504 * 109.47133 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47154 * 300.00047 * 3 2 1 6 6 H 1.48498 * 109.47363 * 60.00100 * 3 2 1 7 7 C 1.37885 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99773 * 173.24153 * 7 2 1 9 9 C 1.50701 * 120.00097 * 353.24665 * 7 2 1 10 10 C 1.52994 * 115.55311 * 85.14434 * 9 7 2 11 11 N 1.46501 * 109.46973 * 65.16522 * 10 9 7 12 12 C 1.34784 * 119.99972 * 182.49856 * 11 10 9 13 13 O 1.21286 * 119.99854 * 0.02562 * 12 11 10 14 14 C 1.50694 * 120.00158 * 180.02562 * 12 11 10 15 15 C 1.52998 * 109.47510 * 179.97438 * 14 12 11 16 16 H 1.09005 * 109.46474 * 305.00826 * 15 14 12 17 17 C 1.53033 * 109.46806 * 185.02093 * 15 14 12 18 18 C 1.53110 * 109.27991 * 180.79724 * 17 15 14 19 19 C 1.53119 * 109.15481 * 57.67630 * 18 17 15 20 20 C 1.53040 * 109.27171 * 302.33731 * 19 18 17 21 21 N 1.46842 * 109.52574 * 59.18178 * 20 19 18 22 22 C 1.53001 * 117.49542 * 230.81403 * 9 7 2 23 23 C 1.53004 * 117.49545 * 299.47400 * 9 7 2 24 24 H 0.96996 * 119.99905 * 5.03622 * 1 2 3 25 25 H 1.08994 * 109.47364 * 185.17293 * 10 9 7 26 26 H 1.09002 * 109.47177 * 305.16977 * 10 9 7 27 27 H 0.96994 * 120.00110 * 2.51019 * 11 10 9 28 28 H 1.08998 * 109.47348 * 300.00704 * 14 12 11 29 29 H 1.09008 * 109.47031 * 60.00379 * 14 12 11 30 30 H 1.08994 * 109.50316 * 300.75233 * 17 15 14 31 31 H 1.09003 * 109.49924 * 60.86406 * 17 15 14 32 32 H 1.09001 * 109.53283 * 297.76684 * 18 17 15 33 33 H 1.09002 * 109.57734 * 177.60525 * 18 17 15 34 34 H 1.08997 * 109.50471 * 182.40331 * 19 18 17 35 35 H 1.08997 * 109.53822 * 62.29566 * 19 18 17 36 36 H 1.08995 * 109.46727 * 299.15936 * 20 19 18 37 37 H 1.09002 * 109.45845 * 179.19559 * 20 19 18 38 38 H 1.00900 * 111.00313 * 174.15535 * 21 20 19 39 39 H 1.09001 * 117.49940 * 215.00080 * 22 9 7 40 40 H 1.08997 * 117.49916 * 0.02731 * 22 9 7 41 41 H 1.08999 * 117.49860 * 359.97438 * 23 9 7 42 42 H 1.08992 * 117.49841 * 144.99652 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0788 -1.1974 -0.1095 9 6 1.2588 -2.4946 0.1546 10 6 0.6913 -3.0870 -1.1369 11 7 1.7926 -3.4615 -2.0274 12 6 1.5295 -3.9609 -3.2514 13 8 0.3810 -4.0997 -3.6156 14 6 2.6623 -4.3467 -4.1673 15 6 2.0945 -4.8818 -5.4834 16 1 1.4054 -5.7004 -5.2756 17 6 3.2388 -5.3895 -6.3635 18 6 2.6679 -5.9055 -7.6872 19 6 1.8874 -4.7794 -8.3707 20 6 0.7822 -4.2891 -7.4324 21 7 1.3794 -3.8055 -6.1811 22 6 1.7565 -3.4722 1.2212 23 6 0.4533 -2.6992 1.4393 24 1 -0.4850 0.8368 -0.0737 25 1 0.0979 -3.9704 -0.9014 26 1 0.0611 -2.3468 -1.6299 27 1 2.7111 -3.3503 -1.7362 28 1 3.2819 -3.4725 -4.3671 29 1 3.2667 -5.1194 -3.6920 30 1 3.9355 -4.5748 -6.5605 31 1 3.7598 -6.1988 -5.8519 32 1 2.0009 -6.7456 -7.4935 33 1 3.4826 -6.2292 -8.3349 34 1 1.4426 -5.1527 -9.2931 35 1 2.5626 -3.9549 -8.5998 36 1 0.0992 -5.1103 -7.2153 37 1 0.2337 -3.4775 -7.9105 38 1 0.6806 -3.3893 -5.5841 39 1 1.6796 -4.5373 1.0028 40 1 2.6229 -3.1745 1.8117 41 1 0.4631 -1.8933 2.1731 42 1 -0.4809 -3.2556 1.3643 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694396546.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:13 Heat of formation + Delta-G solvation = -54.839610 kcal Electronic energy + Delta-G solvation = -20570.286446 eV Core-core repulsion = 17548.923405 eV Total energy + Delta-G solvation = -3021.363042 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.95110 -39.26291 -38.33203 -34.91996 -33.97430 -33.62975 -32.68630 -29.38130 -27.74581 -26.67747 -24.41859 -23.09142 -22.82774 -21.33769 -20.86713 -20.53525 -18.33230 -17.72369 -17.19037 -16.79337 -16.53279 -16.46378 -15.72935 -15.38236 -15.12767 -14.82820 -14.60822 -14.30893 -13.93905 -13.70767 -13.51591 -13.46471 -13.00970 -12.93263 -12.84154 -12.60416 -12.32614 -12.04891 -11.97465 -11.62810 -11.48745 -11.44355 -11.25319 -10.86006 -10.75764 -10.45647 -10.04334 -9.80630 -9.33283 -8.10021 -6.22784 1.41225 1.45065 1.54166 1.77916 2.40397 2.46114 3.18715 3.29531 3.49210 3.79334 3.90769 4.02782 4.12692 4.25599 4.32636 4.41130 4.50710 4.55703 4.61637 4.65071 4.66674 4.73090 4.85417 4.88746 4.98140 4.99280 5.06694 5.08376 5.13955 5.25787 5.26869 5.31039 5.52229 5.59103 5.61667 5.69929 5.78990 6.21520 6.36829 6.41211 6.80296 6.85881 7.43454 7.47123 8.97751 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.023695 B = 0.004384 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.418788 B = 6384.631220 C = 6900.647203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.024 3.976 3 Si 0.949 3.051 4 H -0.260 1.260 5 H -0.288 1.288 6 H -0.285 1.285 7 C -0.502 4.502 8 H 0.065 0.935 9 C 0.005 3.995 10 C 0.179 3.821 11 N -0.698 5.698 12 C 0.501 3.499 13 O -0.600 6.600 14 C -0.128 4.128 15 C 0.103 3.897 16 H 0.023 0.977 17 C -0.108 4.108 18 C -0.120 4.120 19 C -0.113 4.113 20 C 0.054 3.946 21 N -0.697 5.697 22 C -0.175 4.175 23 C -0.163 4.163 24 H 0.258 0.742 25 H 0.032 0.968 26 H 0.028 0.972 27 H 0.411 0.589 28 H 0.112 0.888 29 H 0.127 0.873 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.017 0.983 37 H 0.070 0.930 38 H 0.340 0.660 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.352 -10.942 -11.667 18.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.176 4.176 3 Si 0.775 3.225 4 H -0.184 1.184 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.540 4.540 8 H 0.083 0.917 9 C 0.005 3.995 10 C 0.055 3.945 11 N -0.347 5.347 12 C 0.290 3.710 13 O -0.483 6.483 14 C -0.167 4.167 15 C -0.007 4.007 16 H 0.041 0.959 17 C -0.146 4.146 18 C -0.158 4.158 19 C -0.151 4.151 20 C -0.075 4.075 21 N -0.331 5.331 22 C -0.212 4.212 23 C -0.201 4.201 24 H 0.067 0.933 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.246 0.754 28 H 0.130 0.870 29 H 0.145 0.855 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.035 0.965 37 H 0.089 0.911 38 H 0.160 0.840 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.957 -10.665 -12.125 18.002 hybrid contribution -0.827 0.879 0.815 1.456 sum 7.130 -9.787 -11.310 16.569 Atomic orbital electron populations 1.70109 1.07334 1.27213 1.50019 1.25700 0.95415 1.02097 0.94410 0.85651 0.79612 0.80165 0.77075 1.18380 1.21478 1.21149 1.20697 0.93211 0.89554 1.50541 0.91724 1.19070 0.99560 0.94542 0.86355 1.20515 0.88136 0.95267 0.90601 1.45888 1.10880 1.62665 1.15279 1.21444 0.91102 0.76315 0.82166 1.90577 1.24733 1.57331 1.75652 1.21834 0.96243 1.04804 0.93857 1.21242 0.95590 0.91904 0.91978 0.95892 1.21641 0.96338 1.01162 0.95439 1.21581 1.00085 0.97466 0.96638 1.21590 0.97248 0.98683 0.97595 1.21956 0.96163 0.98267 0.91144 1.60556 1.33253 1.31591 1.07683 1.23014 0.97200 0.96281 1.04674 1.22435 0.93906 1.01477 1.02274 0.93301 0.94966 0.95402 0.75377 0.87031 0.85455 0.90731 0.89687 0.92680 0.89889 0.90390 0.91366 0.96494 0.91117 0.83989 0.89182 0.89458 0.91911 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.73 12.93 21.45 0.28 -51.46 16 2 C 0.02 1.29 5.39 84.66 0.46 1.75 16 3 Si 0.95 42.29 29.55 68.60 2.03 44.32 16 4 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.50 -25.46 8.68 25.60 0.22 -25.24 16 8 H 0.06 3.16 7.82 -2.91 -0.02 3.13 16 9 C 0.01 0.25 1.36 -52.93 -0.07 0.18 16 10 C 0.18 8.17 5.50 86.38 0.48 8.65 16 11 N -0.70 -25.96 5.47 -463.06 -2.53 -28.49 16 12 C 0.50 17.78 7.54 87.65 0.66 18.44 16 13 O -0.60 -25.97 14.19 -3.05 -0.04 -26.01 16 14 C -0.13 -3.15 5.38 29.85 0.16 -2.99 16 15 C 0.10 2.61 2.10 44.93 0.09 2.71 16 16 H 0.02 0.68 7.96 -2.38 -0.02 0.66 16 17 C -0.11 -1.97 5.37 30.64 0.16 -1.80 16 18 C -0.12 -2.02 6.00 30.67 0.18 -1.83 16 19 C -0.11 -2.11 6.09 30.65 0.19 -1.92 16 20 C 0.05 1.32 6.55 86.33 0.57 1.89 16 21 N -0.70 -20.15 6.50 -491.68 -3.20 -23.35 16 22 C -0.17 -6.78 9.96 30.62 0.30 -6.48 16 23 C -0.16 -7.38 9.44 30.62 0.29 -7.09 16 24 H 0.26 14.19 8.32 -92.71 -0.77 13.42 16 25 H 0.03 1.45 8.09 -2.39 -0.02 1.43 16 26 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.41 13.38 8.42 -92.71 -0.78 12.60 16 28 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.13 2.29 8.14 -2.38 -0.02 2.27 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.34 11.96 6.52 -89.69 -0.58 11.38 16 39 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 40 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 41 H 0.06 3.08 8.14 -2.39 -0.02 3.06 16 42 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -62.80 338.58 -0.14 -62.94 By element: Atomic # 1 Polarization: 36.15 SS G_CDS: -0.37 Total: 35.78 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: 3.69 Total: -13.74 kcal Atomic # 7 Polarization: -97.84 SS G_CDS: -5.45 Total: -103.29 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.04 Total: -26.01 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -62.80 -0.14 -62.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694396546.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.102 kcal (2) G-P(sol) polarization free energy of solvation -62.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds