Wall clock time and date at job start Mon Mar 30 2020 05:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99752 * 2 1 4 4 H 1.48507 * 109.46995 * 270.00131 * 3 2 1 5 5 H 1.48492 * 109.47148 * 30.00455 * 3 2 1 6 6 H 1.48498 * 109.46833 * 150.00783 * 3 2 1 7 7 C 1.37878 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99898 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00016 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47248 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99671 * 89.99592 * 10 9 7 12 12 O 1.21282 * 120.00311 * 5.11073 * 11 10 9 13 13 C 1.50697 * 119.99870 * 185.10219 * 11 10 9 14 14 C 1.52999 * 109.47234 * 175.13262 * 13 11 10 15 15 H 1.09004 * 109.45405 * 305.02967 * 14 13 11 16 16 C 1.53043 * 109.46572 * 185.05510 * 14 13 11 17 17 C 1.53112 * 109.27889 * 180.80348 * 16 14 13 18 18 C 1.53125 * 109.16426 * 57.65556 * 17 16 14 19 19 C 1.53036 * 109.27357 * 302.34408 * 18 17 16 20 20 N 1.46844 * 109.52532 * 59.17938 * 19 18 17 21 21 C 1.46496 * 119.99997 * 270.00062 * 10 9 7 22 22 C 1.52996 * 117.50112 * 13.57006 * 21 10 9 23 23 C 1.52994 * 117.50161 * 304.94081 * 21 10 9 24 24 H 0.96997 * 120.00237 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47093 * 60.00234 * 9 7 2 26 26 H 1.09002 * 109.47206 * 300.00257 * 9 7 2 27 27 H 1.08995 * 109.47527 * 55.13466 * 13 11 10 28 28 H 1.09001 * 109.47254 * 295.13487 * 13 11 10 29 29 H 1.09002 * 109.49761 * 300.74314 * 16 14 13 30 30 H 1.09001 * 109.50112 * 60.86118 * 16 14 13 31 31 H 1.08998 * 109.52568 * 297.75099 * 17 16 14 32 32 H 1.09003 * 109.57696 * 177.58779 * 17 16 14 33 33 H 1.08989 * 109.50517 * 182.40481 * 18 17 16 34 34 H 1.09003 * 109.49937 * 62.28177 * 18 17 16 35 35 H 1.08998 * 109.46393 * 299.16099 * 19 18 17 36 36 H 1.09002 * 109.46133 * 179.19271 * 19 18 17 37 37 H 1.00905 * 111.00329 * 62.35072 * 20 19 18 38 38 H 1.09007 * 115.54649 * 159.27119 * 21 10 9 39 39 H 1.08998 * 117.49940 * 359.97438 * 22 21 10 40 40 H 1.08998 * 117.50230 * 145.01885 * 22 21 10 41 41 H 1.08997 * 117.50213 * 214.98160 * 23 21 10 42 42 H 1.09000 * 117.49878 * 0.02562 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6410 -4.1248 1.1667 12 8 2.1782 -3.7273 2.2149 13 6 3.7055 -5.1914 1.1693 14 6 4.1055 -5.5092 2.6115 15 1 4.4080 -4.5911 3.1151 16 6 5.2728 -6.4989 2.6107 17 6 5.6564 -6.8294 4.0557 18 6 4.4345 -7.3983 4.7825 19 6 3.2916 -6.3826 4.7203 20 7 2.9615 -6.1003 3.3176 21 6 2.6790 -4.1694 -1.2692 22 6 2.4082 -3.3626 -2.5407 23 6 1.6256 -4.6492 -2.2697 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 4.5776 -4.8358 0.6205 28 1 3.3187 -6.0920 0.6926 29 1 4.9753 -7.4120 2.0952 30 1 6.1269 -6.0538 2.1002 31 1 5.9909 -5.9230 4.5603 32 1 6.4592 -7.5667 4.0610 33 1 4.6897 -7.5958 5.8235 34 1 4.1239 -8.3257 4.3010 35 1 3.5980 -5.4604 5.2140 36 1 2.4154 -6.7905 5.2245 37 1 2.6374 -6.9324 2.8478 38 1 3.6140 -4.7273 -1.2164 39 1 1.8755 -2.4178 -2.4332 40 1 3.1650 -3.3895 -3.3246 41 1 1.8676 -5.5225 -2.8754 42 1 0.5784 -4.5502 -1.9841 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694407047.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:21 Heat of formation + Delta-G solvation = -18.046512 kcal Electronic energy + Delta-G solvation = -20984.834054 eV Core-core repulsion = 17965.066481 eV Total energy + Delta-G solvation = -3019.767573 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.51693 -38.34352 -36.50244 -33.18474 -32.50318 -31.83140 -31.52680 -28.40922 -26.48110 -23.49565 -22.98855 -22.03468 -21.76799 -21.09122 -20.34316 -18.00078 -16.61789 -16.34026 -15.68389 -15.34527 -14.96750 -14.73175 -14.32011 -14.11883 -14.02309 -13.62037 -13.37329 -12.80484 -12.41578 -12.11438 -12.00062 -11.65294 -11.41174 -11.34061 -11.18478 -10.96633 -10.93963 -10.76598 -10.63722 -10.51403 -10.48825 -10.38951 -10.06696 -9.98756 -9.43181 -8.64152 -8.38010 -8.00313 -7.34513 -5.98148 -4.02510 3.32990 3.39793 3.43789 3.58289 3.96501 4.35725 4.46193 4.54964 4.69136 4.78504 4.91514 5.01963 5.25518 5.30841 5.35480 5.37139 5.40413 5.46811 5.49981 5.55831 5.70421 5.71760 5.80865 5.88500 5.92082 5.94284 6.03032 6.07756 6.18579 6.24541 6.36145 6.52579 6.84745 7.16781 7.28690 7.56080 7.63279 7.68327 7.99674 8.31533 8.60047 8.99268 9.31438 9.62715 11.09403 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020324 B = 0.005223 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.322201 B = 5359.543944 C = 6047.979196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.060 3.940 3 Si 0.895 3.105 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.246 3.754 10 N -0.579 5.579 11 C 0.512 3.488 12 O -0.513 6.513 13 C -0.135 4.135 14 C 0.106 3.894 15 H 0.087 0.913 16 C -0.154 4.154 17 C -0.118 4.118 18 C -0.159 4.159 19 C 0.061 3.939 20 N -0.660 5.660 21 C 0.079 3.921 22 C -0.179 4.179 23 C -0.204 4.204 24 H 0.262 0.738 25 H 0.030 0.970 26 H 0.044 0.956 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.331 0.669 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.646 -15.232 1.311 18.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.723 3.277 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.558 4.558 8 H 0.075 0.925 9 C 0.126 3.874 10 N -0.310 5.310 11 C 0.298 3.702 12 O -0.388 6.388 13 C -0.175 4.175 14 C -0.004 4.004 15 H 0.105 0.895 16 C -0.193 4.193 17 C -0.156 4.156 18 C -0.199 4.199 19 C -0.069 4.069 20 N -0.288 5.288 21 C -0.028 4.028 22 C -0.217 4.217 23 C -0.243 4.243 24 H 0.072 0.928 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.105 0.895 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.149 0.851 38 H 0.132 0.868 39 H 0.137 0.863 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.905 -14.243 2.061 16.923 hybrid contribution 1.137 0.123 -0.333 1.191 sum 10.042 -14.119 1.727 17.412 Atomic orbital electron populations 1.69935 1.05955 1.26861 1.50693 1.24924 0.94829 0.99080 0.95292 0.86539 0.79879 0.83326 0.77927 1.20706 1.21186 1.19968 1.21430 0.93280 0.90598 1.50530 0.92548 1.19218 0.87701 0.82142 0.98290 1.47759 1.45676 1.34625 1.02960 1.20053 0.83473 0.82905 0.83767 1.90700 1.57208 1.60358 1.30532 1.21788 0.99130 0.99267 0.97349 1.21303 0.88313 0.97361 0.93443 0.89501 1.22334 0.99963 1.00161 0.96855 1.21533 0.97423 1.00846 0.95790 1.22316 0.97398 0.99544 1.00596 1.21975 0.96248 0.97971 0.90698 1.60501 1.33746 1.32712 1.01854 1.21454 0.97192 1.01502 0.82638 1.23347 1.03135 0.97280 0.97940 1.23365 0.98698 0.98182 1.04035 0.92819 0.95160 0.93818 0.89455 0.89873 0.92116 0.91456 0.91838 0.92360 0.91841 0.92314 0.90912 0.91024 0.85140 0.86783 0.86329 0.89227 0.89233 0.88767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.82 13.29 55.43 0.74 -26.09 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.74 8.92 -34.44 -0.31 -15.05 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.25 6.50 4.47 -5.19 -0.02 6.48 16 10 N -0.58 -12.49 2.81 -167.48 -0.47 -12.96 16 11 C 0.51 10.74 7.55 -10.99 -0.08 10.65 16 12 O -0.51 -13.02 14.84 5.56 0.08 -12.94 16 13 C -0.13 -1.98 3.81 -27.88 -0.11 -2.08 16 14 C 0.11 1.48 1.99 -67.72 -0.13 1.35 16 15 H 0.09 1.44 8.03 -51.93 -0.42 1.02 16 16 C -0.15 -1.61 5.36 -26.65 -0.14 -1.75 16 17 C -0.12 -1.16 6.00 -26.61 -0.16 -1.32 16 18 C -0.16 -1.54 6.08 -26.65 -0.16 -1.70 16 19 C 0.06 0.74 6.55 -3.84 -0.03 0.72 16 20 N -0.66 -9.49 5.53 -106.76 -0.59 -10.08 16 21 C 0.08 1.33 6.16 -67.94 -0.42 0.91 16 22 C -0.18 -3.01 9.72 -26.73 -0.26 -3.27 16 23 C -0.20 -3.12 10.02 -26.73 -0.27 -3.39 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.03 0.81 6.25 -51.93 -0.32 0.49 16 26 H 0.04 1.33 7.36 -51.93 -0.38 0.95 16 27 H 0.09 1.14 7.55 -51.93 -0.39 0.75 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.55 8.14 -51.94 -0.42 0.13 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.33 4.23 8.79 -39.29 -0.35 3.88 16 38 H 0.11 1.56 6.60 -51.93 -0.34 1.21 16 39 H 0.12 2.45 6.29 -51.93 -0.33 2.12 16 40 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.09 1.61 7.83 -51.93 -0.41 1.20 16 LS Contribution 333.78 15.07 5.03 5.03 Total: -1.00 -32.61 333.78 -9.55 -42.16 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -7.13 Total: 4.67 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -2.19 Total: -6.83 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.32 Total: -49.12 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.08 Total: -12.94 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.61 -9.55 -42.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694407047.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.116 kcal (2) G-P(sol) polarization free energy of solvation -32.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds