Wall clock time and date at job start Mon Mar 30 2020 05:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99752 * 2 1 4 4 H 1.48507 * 109.46995 * 270.00131 * 3 2 1 5 5 H 1.48492 * 109.47148 * 30.00455 * 3 2 1 6 6 H 1.48498 * 109.46833 * 150.00783 * 3 2 1 7 7 C 1.37878 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99898 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00016 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47248 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99671 * 89.99592 * 10 9 7 12 12 O 1.21282 * 120.00311 * 5.11073 * 11 10 9 13 13 C 1.50697 * 119.99870 * 185.10219 * 11 10 9 14 14 C 1.52999 * 109.47234 * 175.13262 * 13 11 10 15 15 H 1.09004 * 109.45405 * 305.02967 * 14 13 11 16 16 C 1.53043 * 109.46572 * 185.05510 * 14 13 11 17 17 C 1.53112 * 109.27889 * 180.80348 * 16 14 13 18 18 C 1.53125 * 109.16426 * 57.65556 * 17 16 14 19 19 C 1.53036 * 109.27357 * 302.34408 * 18 17 16 20 20 N 1.46844 * 109.52532 * 59.17938 * 19 18 17 21 21 C 1.46496 * 119.99997 * 270.00062 * 10 9 7 22 22 C 1.52996 * 117.50112 * 13.57006 * 21 10 9 23 23 C 1.52994 * 117.50161 * 304.94081 * 21 10 9 24 24 H 0.96997 * 120.00237 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47093 * 60.00234 * 9 7 2 26 26 H 1.09002 * 109.47206 * 300.00257 * 9 7 2 27 27 H 1.08995 * 109.47527 * 55.13466 * 13 11 10 28 28 H 1.09001 * 109.47254 * 295.13487 * 13 11 10 29 29 H 1.09002 * 109.49761 * 300.74314 * 16 14 13 30 30 H 1.09001 * 109.50112 * 60.86118 * 16 14 13 31 31 H 1.08998 * 109.52568 * 297.75099 * 17 16 14 32 32 H 1.09003 * 109.57696 * 177.58779 * 17 16 14 33 33 H 1.08989 * 109.50517 * 182.40481 * 18 17 16 34 34 H 1.09003 * 109.49937 * 62.28177 * 18 17 16 35 35 H 1.08998 * 109.46393 * 299.16099 * 19 18 17 36 36 H 1.09002 * 109.46133 * 179.19271 * 19 18 17 37 37 H 1.00905 * 111.00329 * 62.35072 * 20 19 18 38 38 H 1.09007 * 115.54649 * 159.27119 * 21 10 9 39 39 H 1.08998 * 117.49940 * 359.97438 * 22 21 10 40 40 H 1.08998 * 117.50230 * 145.01885 * 22 21 10 41 41 H 1.08997 * 117.50213 * 214.98160 * 23 21 10 42 42 H 1.09000 * 117.49878 * 0.02562 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6410 -4.1248 1.1667 12 8 2.1782 -3.7273 2.2149 13 6 3.7055 -5.1914 1.1693 14 6 4.1055 -5.5092 2.6115 15 1 4.4080 -4.5911 3.1151 16 6 5.2728 -6.4989 2.6107 17 6 5.6564 -6.8294 4.0557 18 6 4.4345 -7.3983 4.7825 19 6 3.2916 -6.3826 4.7203 20 7 2.9615 -6.1003 3.3176 21 6 2.6790 -4.1694 -1.2692 22 6 2.4082 -3.3626 -2.5407 23 6 1.6256 -4.6492 -2.2697 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 4.5776 -4.8358 0.6205 28 1 3.3187 -6.0920 0.6926 29 1 4.9753 -7.4120 2.0952 30 1 6.1269 -6.0538 2.1002 31 1 5.9909 -5.9230 4.5603 32 1 6.4592 -7.5667 4.0610 33 1 4.6897 -7.5958 5.8235 34 1 4.1239 -8.3257 4.3010 35 1 3.5980 -5.4604 5.2140 36 1 2.4154 -6.7905 5.2245 37 1 2.6374 -6.9324 2.8478 38 1 3.6140 -4.7273 -1.2164 39 1 1.8755 -2.4178 -2.4332 40 1 3.1650 -3.3895 -3.3246 41 1 1.8676 -5.5225 -2.8754 42 1 0.5784 -4.5502 -1.9841 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694407047.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:20 Heat of formation + Delta-G solvation = -40.080556 kcal Electronic energy + Delta-G solvation = -20985.789521 eV Core-core repulsion = 17965.066481 eV Total energy + Delta-G solvation = -3020.723041 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.93078 -39.53493 -38.01179 -35.21198 -33.74665 -33.50945 -32.48108 -30.05889 -28.06622 -25.09150 -24.28107 -23.35403 -23.05285 -22.38285 -21.26895 -19.58570 -18.55537 -18.09859 -17.11473 -16.60772 -16.45889 -15.90560 -15.71082 -15.45109 -15.12498 -14.92472 -14.78531 -14.32347 -13.88095 -13.38680 -13.32368 -13.17485 -12.92378 -12.71704 -12.62445 -12.52374 -12.19424 -12.15716 -12.12866 -12.03830 -11.95043 -11.54164 -11.43768 -11.37015 -11.24711 -10.62667 -10.33388 -9.10715 -8.99132 -8.18964 -6.34152 1.35143 1.38374 1.48542 1.99602 2.31843 2.47594 3.08824 3.17264 3.37579 3.70344 3.87824 3.95104 4.02202 4.10263 4.12868 4.24496 4.28511 4.39675 4.43316 4.55236 4.70143 4.78686 4.86685 4.89156 4.96584 4.99632 5.09040 5.13177 5.16076 5.18423 5.22280 5.25383 5.31270 5.43859 5.46265 5.61178 5.92726 6.10683 6.27558 6.68221 6.74499 6.95879 7.32512 7.69000 8.86983 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020324 B = 0.005223 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.322201 B = 5359.543944 C = 6047.979196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.966 3.034 4 H -0.263 1.263 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.530 4.530 8 H 0.051 0.949 9 C 0.266 3.734 10 N -0.588 5.588 11 C 0.499 3.501 12 O -0.572 6.572 13 C -0.119 4.119 14 C 0.108 3.892 15 H 0.048 0.952 16 C -0.142 4.142 17 C -0.120 4.120 18 C -0.149 4.149 19 C 0.060 3.940 20 N -0.689 5.689 21 C 0.065 3.935 22 C -0.188 4.188 23 C -0.184 4.184 24 H 0.265 0.735 25 H 0.017 0.983 26 H -0.011 1.011 27 H 0.114 0.886 28 H 0.116 0.884 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.048 0.952 36 H 0.073 0.927 37 H 0.341 0.659 38 H 0.162 0.838 39 H 0.070 0.930 40 H 0.127 0.873 41 H 0.137 0.863 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.452 -17.276 -0.133 21.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.193 4.193 3 Si 0.790 3.210 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.569 4.569 8 H 0.070 0.930 9 C 0.144 3.856 10 N -0.319 5.319 11 C 0.289 3.711 12 O -0.451 6.451 13 C -0.159 4.159 14 C -0.002 4.002 15 H 0.067 0.933 16 C -0.181 4.181 17 C -0.157 4.157 18 C -0.188 4.188 19 C -0.069 4.069 20 N -0.319 5.319 21 C -0.040 4.040 22 C -0.226 4.226 23 C -0.222 4.222 24 H 0.074 0.926 25 H 0.035 0.965 26 H 0.007 0.993 27 H 0.132 0.868 28 H 0.134 0.866 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.159 0.841 38 H 0.179 0.821 39 H 0.089 0.911 40 H 0.145 0.855 41 H 0.155 0.845 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.736 -16.323 0.579 20.112 hybrid contribution 0.175 0.757 0.125 0.787 sum 11.910 -15.566 0.704 19.612 Atomic orbital electron populations 1.70065 1.07621 1.27965 1.51453 1.25852 0.95732 1.02989 0.94683 0.85443 0.78278 0.78492 0.78774 1.18763 1.20817 1.19745 1.21635 0.93034 0.91738 1.50446 0.93026 1.18564 0.88113 0.83957 0.94916 1.47784 1.44930 1.33610 1.05586 1.21273 0.83911 0.83434 0.82512 1.90668 1.59301 1.62519 1.32569 1.21794 0.97504 0.97873 0.98693 1.21207 0.89646 0.96973 0.92392 0.93317 1.22221 0.98512 0.99742 0.97661 1.21562 0.97932 1.00930 0.95286 1.22210 0.96149 0.98900 1.01571 1.21944 0.97591 0.97803 0.89593 1.60422 1.34924 1.33629 1.02916 1.22008 0.99509 1.02105 0.80358 1.23298 1.04249 0.95849 0.99177 1.23400 0.96770 0.98942 1.03112 0.92571 0.96487 0.99251 0.86775 0.86603 0.90124 0.90242 0.93072 0.90211 0.90738 0.90991 0.93296 0.90808 0.84093 0.82093 0.91126 0.85535 0.84549 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.04 13.29 21.45 0.28 -57.76 16 2 C 0.01 0.35 5.46 84.66 0.46 0.81 16 3 Si 0.97 46.06 29.54 68.60 2.03 48.09 16 4 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 6 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.53 -31.28 8.92 25.60 0.23 -31.06 16 8 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 9 C 0.27 14.94 4.47 85.63 0.38 15.32 16 10 N -0.59 -25.84 2.81 -802.17 -2.25 -28.09 16 11 C 0.50 21.27 7.55 87.66 0.66 21.93 16 12 O -0.57 -30.70 14.84 -3.04 -0.05 -30.75 16 13 C -0.12 -3.21 3.81 29.85 0.11 -3.10 16 14 C 0.11 2.91 1.99 44.94 0.09 3.00 16 15 H 0.05 1.66 8.03 -2.39 -0.02 1.64 16 16 C -0.14 -2.51 5.36 30.65 0.16 -2.35 16 17 C -0.12 -2.03 6.00 30.67 0.18 -1.85 16 18 C -0.15 -2.58 6.08 30.65 0.19 -2.39 16 19 C 0.06 1.47 6.55 86.33 0.57 2.04 16 20 N -0.69 -19.69 5.53 -491.67 -2.72 -22.40 16 21 C 0.06 2.04 6.16 44.99 0.28 2.32 16 22 C -0.19 -6.05 9.72 30.59 0.30 -5.75 16 23 C -0.18 -5.21 10.02 30.59 0.31 -4.90 16 24 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 25 H 0.02 0.99 6.25 -2.39 -0.01 0.97 16 26 H -0.01 -0.70 7.36 -2.39 -0.02 -0.72 16 27 H 0.11 2.51 7.55 -2.39 -0.02 2.49 16 28 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.34 8.24 8.79 -89.69 -0.79 7.45 16 38 H 0.16 3.57 6.60 -2.38 -0.02 3.55 16 39 H 0.07 3.00 6.29 -2.39 -0.02 2.99 16 40 H 0.13 3.10 8.14 -2.39 -0.02 3.08 16 41 H 0.14 2.64 8.14 -2.39 -0.02 2.62 16 42 H 0.07 2.26 7.83 -2.39 -0.02 2.25 16 Total: -1.00 -77.85 333.78 1.42 -76.43 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.21 Total: 20.46 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: 3.92 Total: -5.98 kcal Atomic # 7 Polarization: -103.56 SS G_CDS: -4.68 Total: -108.25 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -0.05 Total: -30.75 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -77.85 1.42 -76.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694407047.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.349 kcal (2) G-P(sol) polarization free energy of solvation -77.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds