Wall clock time and date at job start Mon Mar 30 2020 05:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86797 * 120.00733 * 2 1 4 4 H 1.48494 * 109.47490 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46718 * 300.00286 * 3 2 1 6 6 H 1.48503 * 109.46960 * 59.99317 * 3 2 1 7 7 C 1.38956 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00420 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99812 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00290 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99680 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00196 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.47066 * 180.02562 * 12 10 9 14 14 C 1.46901 * 110.99870 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.46916 * 180.02562 * 14 13 12 16 16 H 1.08997 * 109.47288 * 55.00971 * 15 14 13 17 17 C 1.52943 * 109.47036 * 294.99726 * 15 14 13 18 18 C 1.52948 * 109.81842 * 177.02460 * 17 15 14 19 19 C 1.53178 * 109.45156 * 62.98559 * 18 17 15 20 20 C 1.53156 * 108.88027 * 303.42973 * 19 18 17 21 21 C 1.52845 * 117.68352 * 268.50840 * 20 19 18 22 22 C 1.52808 * 117.74788 * 199.62714 * 20 19 18 23 23 C 1.53148 * 115.00468 * 53.94208 * 20 19 18 24 24 H 0.97004 * 119.99642 * 0.02562 * 1 2 3 25 25 H 0.97009 * 120.00081 * 0.02562 * 9 7 2 26 26 H 1.09001 * 109.47558 * 60.00201 * 12 10 9 27 27 H 1.08998 * 109.47216 * 299.99863 * 12 10 9 28 28 H 1.00901 * 110.99869 * 56.04737 * 13 12 10 29 29 H 1.09004 * 109.47031 * 299.99620 * 14 13 12 30 30 H 1.08995 * 109.47111 * 59.99900 * 14 13 12 31 31 H 1.08999 * 109.41528 * 297.12738 * 17 15 14 32 32 H 1.08998 * 109.41312 * 56.92162 * 17 15 14 33 33 H 1.09003 * 109.46831 * 182.97495 * 18 17 15 34 34 H 1.08999 * 109.47343 * 302.98009 * 18 17 15 35 35 H 1.08997 * 109.57360 * 63.25168 * 19 18 17 36 36 H 1.08997 * 109.56801 * 183.49462 * 19 18 17 37 37 H 1.09004 * 117.50081 * 359.73221 * 21 20 19 38 38 H 1.09002 * 117.50625 * 144.77693 * 21 20 19 39 39 H 1.09001 * 117.50163 * 215.10974 * 22 20 19 40 40 H 1.08994 * 117.50548 * 0.15442 * 22 20 19 41 41 H 1.09005 * 109.57120 * 186.23310 * 23 20 19 42 42 H 1.09005 * 109.56944 * 65.87663 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 3.7082 1.3462 -0.0006 5 1 1.8895 2.3963 -1.2125 6 1 1.8895 2.3964 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0887 -1.2035 0.0010 9 7 1.3233 -2.3907 0.0016 10 6 1.9970 -3.5579 0.0026 11 8 3.2100 -3.5580 0.0031 12 6 1.2434 -4.8629 0.0032 13 7 2.1980 -5.9796 0.0050 14 6 1.4976 -7.2709 0.0050 15 6 2.5225 -8.4070 0.0074 16 1 3.2021 -8.2813 0.8502 17 6 3.3183 -8.3784 -1.2983 18 6 4.3949 -9.4645 -1.2732 19 6 3.7288 -10.8412 -1.1890 20 6 2.8258 -10.8801 0.0474 21 6 3.4336 -11.3870 1.3550 22 6 2.4254 -12.2501 0.5931 23 6 1.7961 -9.7497 0.1328 24 1 -0.4850 0.8401 -0.0004 25 1 0.3532 -2.3907 0.0016 26 1 0.6171 -4.9213 -0.8870 27 1 0.6164 -4.9201 0.8930 28 1 2.8322 -5.9119 0.7868 29 1 0.8717 -7.3448 0.8944 30 1 0.8737 -7.3458 -0.8856 31 1 2.6450 -8.5551 -2.1370 32 1 3.7906 -7.4028 -1.4134 33 1 4.9924 -9.4049 -2.1830 34 1 5.0384 -9.3183 -0.4057 35 1 3.1303 -11.0126 -2.0837 36 1 4.4943 -11.6129 -1.1086 37 1 4.4780 -11.6987 1.3370 38 1 3.0981 -10.9194 2.2807 39 1 1.4265 -12.3504 1.0178 40 1 2.8063 -13.1296 0.0742 41 1 1.2800 -9.7975 1.0917 42 1 1.0742 -9.8513 -0.6777 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695740067.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:04 Heat of formation + Delta-G solvation = -38.739745 kcal Electronic energy + Delta-G solvation = -19920.531795 eV Core-core repulsion = 16899.866896 eV Total energy + Delta-G solvation = -3020.664899 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.67419 -38.22417 -36.24719 -34.23808 -33.67355 -31.47730 -31.11290 -27.79438 -26.97255 -24.84358 -23.18048 -22.70650 -22.04337 -20.40640 -19.17715 -18.70525 -17.84388 -16.09056 -15.69947 -15.40976 -15.16596 -14.60869 -14.49948 -14.20887 -13.99217 -13.61604 -13.38420 -13.13521 -12.84119 -12.46165 -12.00138 -11.86056 -11.78666 -11.62402 -11.49363 -11.39728 -11.10275 -11.03765 -10.97397 -10.57063 -10.32754 -10.21054 -10.12937 -10.03564 -9.61868 -9.49557 -8.40859 -7.98173 -7.91935 -6.39612 -3.80194 3.17894 3.28186 3.35743 3.56580 3.94476 4.12801 4.31875 4.49171 4.59049 4.71747 4.76482 5.00565 5.07893 5.18708 5.22163 5.27873 5.34064 5.43243 5.43973 5.49586 5.63130 5.68999 5.73392 5.76589 5.81065 5.88203 5.91652 5.93562 5.95420 6.04102 6.15135 6.18348 6.29120 6.33092 6.49765 6.57557 7.30530 7.57573 7.74402 8.09432 8.64168 9.20512 9.57380 10.09041 10.78371 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.050372 B = 0.002942 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.736434 B = 9514.700768 C = 9763.902698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.566 5.566 10 C 0.442 3.558 11 O -0.583 6.583 12 C 0.051 3.949 13 N -0.667 5.667 14 C 0.062 3.938 15 C -0.078 4.078 16 H 0.069 0.931 17 C -0.108 4.108 18 C -0.118 4.118 19 C -0.081 4.081 20 C -0.116 4.116 21 C -0.175 4.175 22 C -0.180 4.180 23 C -0.075 4.075 24 H 0.271 0.729 25 H 0.392 0.608 26 H 0.085 0.915 27 H 0.041 0.959 28 H 0.348 0.652 29 H 0.024 0.976 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.060 0.940 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.315 -21.420 0.267 21.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.227 3.773 11 O -0.467 6.467 12 C -0.082 4.082 13 N -0.299 5.299 14 C -0.067 4.067 15 C -0.097 4.097 16 H 0.087 0.913 17 C -0.145 4.145 18 C -0.155 4.155 19 C -0.118 4.118 20 C -0.116 4.116 21 C -0.212 4.212 22 C -0.217 4.217 23 C -0.113 4.113 24 H 0.080 0.920 25 H 0.225 0.775 26 H 0.103 0.897 27 H 0.059 0.941 28 H 0.167 0.833 29 H 0.042 0.958 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.079 0.921 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.093 -21.230 -0.415 21.337 hybrid contribution -0.690 0.785 0.978 1.431 sum 1.403 -20.446 0.563 20.502 Atomic orbital electron populations 1.69623 1.05942 1.28001 1.50860 1.25264 0.95637 0.99719 0.97425 0.85802 0.79722 0.81156 0.77680 1.19213 1.20754 1.20793 1.19755 0.93389 0.82249 1.47336 0.87889 1.41882 1.09199 1.04632 1.64522 1.19842 0.88394 0.84747 0.84280 1.90520 1.13774 1.87098 1.55294 1.21666 0.94417 0.91059 1.01079 1.60053 1.18793 0.99910 1.51133 1.22025 0.95456 0.89108 1.00120 1.21091 0.96837 0.92743 0.99056 0.91256 1.21457 0.97105 0.99488 0.96460 1.21541 0.98099 0.94257 1.01606 1.21153 0.97245 0.97586 0.95829 1.21475 1.00242 0.94787 0.95123 1.23006 0.98449 1.04056 0.95713 1.22985 0.99913 0.94336 1.04481 1.21164 0.96040 0.92533 1.01576 0.91961 0.77481 0.89700 0.94057 0.83310 0.95800 0.91207 0.92517 0.90037 0.92144 0.92079 0.91705 0.92343 0.89069 0.88986 0.89037 0.89097 0.92113 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.85 13.05 55.50 0.72 -24.12 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 8 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 9 N -0.57 -14.58 5.29 -10.96 -0.06 -14.64 16 10 C 0.44 10.63 7.82 -10.99 -0.09 10.54 16 11 O -0.58 -16.07 15.78 5.54 0.09 -15.99 16 12 C 0.05 0.91 6.17 -4.97 -0.03 0.88 16 13 N -0.67 -10.97 5.52 -115.05 -0.64 -11.60 16 14 C 0.06 0.79 5.08 -3.82 -0.02 0.77 16 15 C -0.08 -0.88 2.34 -90.56 -0.21 -1.09 16 16 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 17 C -0.11 -1.26 5.03 -26.79 -0.13 -1.39 16 18 C -0.12 -1.19 5.93 -26.67 -0.16 -1.35 16 19 C -0.08 -0.72 5.67 -26.56 -0.15 -0.87 16 20 C -0.12 -1.05 1.97 -154.53 -0.31 -1.36 16 21 C -0.18 -1.50 9.93 -26.80 -0.27 -1.77 16 22 C -0.18 -1.45 9.99 -26.81 -0.27 -1.72 16 23 C -0.08 -0.72 4.95 -26.56 -0.13 -0.85 16 24 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 25 H 0.39 9.66 7.90 -40.82 -0.32 9.33 16 26 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.35 5.95 8.43 -39.29 -0.33 5.62 16 29 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 1.16 7.66 -51.93 -0.40 0.76 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 340.21 15.07 5.13 5.13 Total: -1.00 -30.35 340.21 -9.10 -39.46 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -7.32 Total: 11.82 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -2.00 Total: -6.29 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: 0.03 Total: -50.36 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: 0.09 Total: -15.99 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.35 -9.10 -39.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695740067.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.716 kcal (2) G-P(sol) polarization free energy of solvation -30.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds