Wall clock time and date at job start Mon Mar 30 2020 05:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86797 * 120.00733 * 2 1 4 4 H 1.48494 * 109.47490 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46718 * 300.00286 * 3 2 1 6 6 H 1.48503 * 109.46960 * 59.99317 * 3 2 1 7 7 C 1.38956 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00420 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99812 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00290 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99680 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00196 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.47066 * 180.02562 * 12 10 9 14 14 C 1.46901 * 110.99870 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.46916 * 180.02562 * 14 13 12 16 16 H 1.08997 * 109.47288 * 55.00971 * 15 14 13 17 17 C 1.52943 * 109.47036 * 294.99726 * 15 14 13 18 18 C 1.52948 * 109.81842 * 177.02460 * 17 15 14 19 19 C 1.53178 * 109.45156 * 62.98559 * 18 17 15 20 20 C 1.53156 * 108.88027 * 303.42973 * 19 18 17 21 21 C 1.52845 * 117.68352 * 268.50840 * 20 19 18 22 22 C 1.52808 * 117.74788 * 199.62714 * 20 19 18 23 23 C 1.53148 * 115.00468 * 53.94208 * 20 19 18 24 24 H 0.97004 * 119.99642 * 0.02562 * 1 2 3 25 25 H 0.97009 * 120.00081 * 0.02562 * 9 7 2 26 26 H 1.09001 * 109.47558 * 60.00201 * 12 10 9 27 27 H 1.08998 * 109.47216 * 299.99863 * 12 10 9 28 28 H 1.00901 * 110.99869 * 56.04737 * 13 12 10 29 29 H 1.09004 * 109.47031 * 299.99620 * 14 13 12 30 30 H 1.08995 * 109.47111 * 59.99900 * 14 13 12 31 31 H 1.08999 * 109.41528 * 297.12738 * 17 15 14 32 32 H 1.08998 * 109.41312 * 56.92162 * 17 15 14 33 33 H 1.09003 * 109.46831 * 182.97495 * 18 17 15 34 34 H 1.08999 * 109.47343 * 302.98009 * 18 17 15 35 35 H 1.08997 * 109.57360 * 63.25168 * 19 18 17 36 36 H 1.08997 * 109.56801 * 183.49462 * 19 18 17 37 37 H 1.09004 * 117.50081 * 359.73221 * 21 20 19 38 38 H 1.09002 * 117.50625 * 144.77693 * 21 20 19 39 39 H 1.09001 * 117.50163 * 215.10974 * 22 20 19 40 40 H 1.08994 * 117.50548 * 0.15442 * 22 20 19 41 41 H 1.09005 * 109.57120 * 186.23310 * 23 20 19 42 42 H 1.09005 * 109.56944 * 65.87663 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 3.7082 1.3462 -0.0006 5 1 1.8895 2.3963 -1.2125 6 1 1.8895 2.3964 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0887 -1.2035 0.0010 9 7 1.3233 -2.3907 0.0016 10 6 1.9970 -3.5579 0.0026 11 8 3.2100 -3.5580 0.0031 12 6 1.2434 -4.8629 0.0032 13 7 2.1980 -5.9796 0.0050 14 6 1.4976 -7.2709 0.0050 15 6 2.5225 -8.4070 0.0074 16 1 3.2021 -8.2813 0.8502 17 6 3.3183 -8.3784 -1.2983 18 6 4.3949 -9.4645 -1.2732 19 6 3.7288 -10.8412 -1.1890 20 6 2.8258 -10.8801 0.0474 21 6 3.4336 -11.3870 1.3550 22 6 2.4254 -12.2501 0.5931 23 6 1.7961 -9.7497 0.1328 24 1 -0.4850 0.8401 -0.0004 25 1 0.3532 -2.3907 0.0016 26 1 0.6171 -4.9213 -0.8870 27 1 0.6164 -4.9201 0.8930 28 1 2.8322 -5.9119 0.7868 29 1 0.8717 -7.3448 0.8944 30 1 0.8737 -7.3458 -0.8856 31 1 2.6450 -8.5551 -2.1370 32 1 3.7906 -7.4028 -1.4134 33 1 4.9924 -9.4049 -2.1830 34 1 5.0384 -9.3183 -0.4057 35 1 3.1303 -11.0126 -2.0837 36 1 4.4943 -11.6129 -1.1086 37 1 4.4780 -11.6987 1.3370 38 1 3.0981 -10.9194 2.2807 39 1 1.4265 -12.3504 1.0178 40 1 2.8063 -13.1296 0.0742 41 1 1.2800 -9.7975 1.0917 42 1 1.0742 -9.8513 -0.6777 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695740067.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:04 Heat of formation + Delta-G solvation = -57.669133 kcal Electronic energy + Delta-G solvation = -19921.352635 eV Core-core repulsion = 16899.866896 eV Total energy + Delta-G solvation = -3021.485739 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.51117 -40.05345 -37.35585 -35.97923 -35.01334 -33.28037 -32.35037 -28.94865 -28.09419 -26.52934 -24.55297 -23.35783 -22.87027 -21.42484 -20.95314 -19.91011 -19.45998 -17.78981 -16.99988 -16.48987 -16.34256 -16.06260 -15.87899 -15.37216 -15.30772 -15.06882 -14.61744 -14.22269 -14.01143 -13.59958 -13.49042 -13.23327 -12.96276 -12.86508 -12.69549 -12.50879 -12.41027 -12.27274 -12.11514 -11.92754 -11.80059 -11.52292 -11.47708 -10.98923 -10.75009 -10.37684 -10.31170 -10.02195 -9.26921 -8.47465 -5.96252 1.36287 1.41441 1.55970 2.04585 2.28923 2.84921 3.00497 3.19806 3.53264 3.72532 3.81969 3.93909 4.05387 4.18020 4.28710 4.32071 4.37440 4.45217 4.49699 4.58171 4.62518 4.70484 4.78354 4.83071 4.85428 4.88810 5.02642 5.08323 5.14431 5.15062 5.30261 5.33584 5.38286 5.40515 5.51855 5.56502 5.62953 5.90878 6.13199 6.42489 6.59632 7.12033 7.55560 8.10993 8.70321 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.050372 B = 0.002942 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.736434 B = 9514.700768 C = 9763.902698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.994 3.006 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.333 4.333 8 H 0.078 0.922 9 N -0.574 5.574 10 C 0.438 3.562 11 O -0.623 6.623 12 C 0.065 3.935 13 N -0.680 5.680 14 C 0.065 3.935 15 C -0.072 4.072 16 H 0.060 0.940 17 C -0.105 4.105 18 C -0.115 4.115 19 C -0.077 4.077 20 C -0.128 4.128 21 C -0.180 4.180 22 C -0.170 4.170 23 C -0.070 4.070 24 H 0.278 0.722 25 H 0.396 0.604 26 H 0.103 0.897 27 H 0.065 0.935 28 H 0.342 0.658 29 H 0.037 0.963 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.066 0.934 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.487 -22.480 0.343 22.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.463 4.463 8 H 0.096 0.904 9 N -0.211 5.211 10 C 0.225 3.775 11 O -0.510 6.510 12 C -0.067 4.067 13 N -0.312 5.312 14 C -0.063 4.063 15 C -0.091 4.091 16 H 0.078 0.922 17 C -0.142 4.142 18 C -0.152 4.152 19 C -0.114 4.114 20 C -0.128 4.128 21 C -0.217 4.217 22 C -0.207 4.207 23 C -0.107 4.107 24 H 0.087 0.913 25 H 0.230 0.770 26 H 0.121 0.879 27 H 0.082 0.918 28 H 0.160 0.840 29 H 0.055 0.945 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.085 0.915 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.231 -22.312 -0.342 22.349 hybrid contribution -0.425 1.073 0.951 1.495 sum 0.806 -21.239 0.609 21.264 Atomic orbital electron populations 1.69680 1.06842 1.29257 1.50418 1.26056 0.96567 1.02446 0.96269 0.84862 0.78010 0.77032 0.78377 1.19818 1.19553 1.19494 1.19703 0.92678 0.84051 1.49862 0.90396 1.41949 1.09340 1.04738 1.65109 1.20899 0.88260 0.86186 0.82108 1.90489 1.15888 1.87979 1.56610 1.21530 0.94074 0.88224 1.02921 1.60065 1.19028 1.00961 1.51138 1.22102 0.95765 0.87523 1.00955 1.21021 0.96410 0.93337 0.98303 0.92172 1.21392 0.97499 0.98445 0.96908 1.21502 0.97619 0.94655 1.01466 1.21118 0.97458 0.96750 0.96067 1.21483 1.00499 0.95413 0.95386 1.23054 0.98882 1.04329 0.95449 1.23043 1.00067 0.93900 1.03642 1.21103 0.96084 0.91461 1.02093 0.91274 0.76967 0.87943 0.91759 0.84017 0.94470 0.90583 0.92310 0.93093 0.91867 0.92747 0.91334 0.91393 0.88803 0.89115 0.88423 0.88196 0.91501 0.90979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.21 13.05 21.66 0.28 -49.92 16 2 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 3 Si 0.99 43.40 29.55 68.60 2.03 45.43 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 7 C -0.33 -19.26 9.68 84.04 0.81 -18.45 16 8 H 0.08 4.81 7.16 -2.92 -0.02 4.79 16 9 N -0.57 -30.05 5.29 -306.99 -1.62 -31.67 16 10 C 0.44 21.35 7.82 87.66 0.69 22.03 16 11 O -0.62 -35.38 15.78 -3.08 -0.05 -35.43 16 12 C 0.06 2.29 6.17 85.55 0.53 2.82 16 13 N -0.68 -22.06 5.52 -517.92 -2.86 -24.92 16 14 C 0.07 1.56 5.08 86.30 0.44 2.00 16 15 C -0.07 -1.54 2.34 -10.75 -0.03 -1.56 16 16 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 17 C -0.10 -2.42 5.03 30.56 0.15 -2.27 16 18 C -0.11 -2.25 5.93 30.64 0.18 -2.06 16 19 C -0.08 -1.24 5.67 30.71 0.17 -1.07 16 20 C -0.13 -2.06 1.97 -52.20 -0.10 -2.16 16 21 C -0.18 -2.76 9.93 30.55 0.30 -2.46 16 22 C -0.17 -2.31 9.99 30.54 0.31 -2.00 16 23 C -0.07 -1.20 4.95 30.70 0.15 -1.04 16 24 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 25 H 0.40 19.65 7.90 -92.70 -0.73 18.92 16 26 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 27 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.34 11.76 8.43 -89.69 -0.76 11.01 16 29 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.05 1.48 7.66 -2.39 -0.02 1.46 16 33 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 0.98 8.10 -2.39 -0.02 0.96 16 37 H 0.09 1.37 8.14 -2.38 -0.02 1.36 16 38 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.07 1.08 8.09 -2.38 -0.02 1.06 16 42 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -65.32 340.21 1.36 -63.96 By element: Atomic # 1 Polarization: 39.55 SS G_CDS: -0.49 Total: 39.06 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 4.07 Total: -6.51 kcal Atomic # 7 Polarization: -102.31 SS G_CDS: -4.20 Total: -106.51 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -0.05 Total: -35.43 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -65.32 1.36 -63.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695740067.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.288 kcal (2) G-P(sol) polarization free energy of solvation -65.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds