Wall clock time and date at job start Mon Mar 30 2020 04:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86796 * 120.00303 * 2 1 4 4 H 1.48504 * 109.47042 * 89.99666 * 3 2 1 5 5 H 1.48501 * 109.47296 * 209.99759 * 3 2 1 6 6 H 1.48500 * 109.46931 * 330.00056 * 3 2 1 7 7 C 1.38957 * 119.99668 * 179.72305 * 2 1 3 8 8 H 1.08000 * 119.99954 * 0.02562 * 7 2 1 9 9 N 1.37094 * 119.99834 * 180.02562 * 7 2 1 10 10 C 1.34777 * 120.00065 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99724 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00350 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.47125 * 180.02562 * 12 10 9 14 14 C 1.46900 * 110.99853 * 180.02562 * 13 12 10 15 15 H 1.08997 * 109.47171 * 32.84535 * 14 13 12 16 16 C 1.52999 * 109.47262 * 272.84637 * 14 13 12 17 17 C 1.53003 * 109.47608 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.46906 * 59.99865 * 17 16 14 19 19 C 1.52999 * 109.47097 * 300.00448 * 18 17 16 20 20 C 1.52993 * 109.47236 * 60.00012 * 19 18 17 21 21 H 1.08999 * 109.47785 * 60.00017 * 20 19 18 22 22 C 1.53009 * 109.47114 * 179.97438 * 20 19 18 23 23 C 1.52991 * 117.49653 * 3.23189 * 22 20 19 24 24 C 1.52994 * 117.49575 * 294.57467 * 22 20 19 25 25 H 0.97004 * 119.99438 * 0.02562 * 1 2 3 26 26 H 0.97000 * 120.00256 * 359.97438 * 9 7 2 27 27 H 1.09009 * 109.46629 * 300.00333 * 12 10 9 28 28 H 1.09005 * 109.47002 * 59.99463 * 12 10 9 29 29 H 1.00895 * 111.00103 * 303.94911 * 13 12 10 30 30 H 1.09001 * 109.47392 * 300.00208 * 16 14 13 31 31 H 1.09003 * 109.46974 * 60.00185 * 16 14 13 32 32 H 1.09001 * 109.46979 * 300.00541 * 17 16 14 33 33 H 1.08991 * 109.47302 * 180.02562 * 17 16 14 34 34 H 1.08992 * 109.46962 * 179.97438 * 18 17 16 35 35 H 1.09001 * 109.46748 * 60.00536 * 18 17 16 36 36 H 1.08997 * 109.46944 * 299.99864 * 19 18 17 37 37 H 1.08996 * 109.47116 * 180.02562 * 19 18 17 38 38 H 1.08997 * 115.54900 * 148.90388 * 22 20 19 39 39 H 1.08998 * 117.50441 * 0.02562 * 23 22 20 40 40 H 1.09008 * 117.50240 * 145.01935 * 23 22 20 41 41 H 1.09006 * 117.49809 * 214.97604 * 24 22 20 42 42 H 1.09001 * 117.50527 * 359.97209 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 1.4001 5 1 3.5458 1.4400 -0.7000 6 1 1.4457 2.6526 -0.7000 7 6 2.0088 -1.2034 0.0058 8 1 1.4688 -2.1387 0.0099 9 7 3.3798 -1.2035 0.0063 10 6 4.0536 -2.3707 0.0125 11 8 3.4471 -3.4210 0.0181 12 6 5.5607 -2.3708 0.0125 13 7 6.0502 -3.7557 0.0192 14 6 7.5187 -3.7950 0.0200 15 1 7.9047 -2.9391 0.5735 16 6 8.0311 -3.7438 -1.4207 17 6 9.5606 -3.7840 -1.4200 18 6 10.0363 -5.0773 -0.7551 19 6 9.5240 -5.1285 0.6856 20 6 7.9946 -5.0883 0.6847 21 1 7.6088 -5.9445 0.1313 22 6 7.4822 -5.1402 2.1255 23 6 8.5238 -5.1418 3.2460 24 6 7.7448 -6.4191 2.9230 25 1 -0.4849 0.8401 -0.0004 26 1 3.8648 -0.3635 0.0023 27 1 5.9240 -1.8616 -0.8802 28 1 5.9240 -1.8522 0.8998 29 1 5.6748 -4.2682 0.8031 30 1 7.6450 -4.5997 -1.9743 31 1 7.6925 -2.8221 -1.8942 32 1 9.9463 -2.9279 -0.8665 33 1 9.9255 -3.7471 -2.4463 34 1 11.1259 -5.1062 -0.7550 35 1 9.6506 -5.9335 -1.3086 36 1 9.9096 -4.2724 1.2390 37 1 9.8633 -6.0497 1.1593 38 1 6.5449 -4.6153 2.3103 39 1 9.5741 -5.1054 2.9570 40 1 8.2718 -4.6182 4.1684 41 1 6.9805 -6.7355 3.6329 42 1 8.2822 -7.2238 2.4212 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695839586.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:17 Heat of formation + Delta-G solvation = -46.141699 kcal Electronic energy + Delta-G solvation = -20585.849238 eV Core-core repulsion = 17564.863367 eV Total energy + Delta-G solvation = -3020.985872 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.88050 -40.05764 -37.28735 -36.18534 -35.46980 -33.76235 -31.15757 -30.73253 -27.86088 -25.54827 -24.88190 -23.28713 -22.38636 -21.32807 -21.17583 -20.42913 -19.94251 -18.00442 -17.22024 -16.68389 -16.49345 -16.14585 -15.59940 -15.51744 -15.07125 -15.04675 -14.77852 -14.37092 -14.19038 -14.12434 -13.52346 -13.19399 -12.97748 -12.89435 -12.53136 -12.43425 -12.38559 -12.29278 -11.99334 -11.95448 -11.53391 -11.42772 -11.38771 -11.14794 -10.84538 -10.61731 -10.43086 -10.26804 -9.29707 -8.42828 -6.03937 1.29270 1.34205 1.43571 1.92964 2.21815 2.69659 2.92506 3.13406 3.38253 3.63157 3.76870 3.99010 4.08518 4.12423 4.14661 4.23642 4.36573 4.38835 4.44024 4.52215 4.57636 4.60603 4.66432 4.76050 4.82243 4.95388 4.98496 5.11926 5.19270 5.26855 5.28687 5.34473 5.36515 5.39011 5.43768 5.51745 5.61185 5.90748 6.13434 6.42793 6.58405 6.85987 7.37479 7.94001 8.74926 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.025427 B = 0.004202 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.943635 B = 6661.203121 C = 7168.756118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.965 3.035 4 H -0.256 1.256 5 H -0.232 1.232 6 H -0.273 1.273 7 C -0.331 4.331 8 H 0.054 0.946 9 N -0.590 5.590 10 C 0.448 3.552 11 O -0.614 6.614 12 C 0.063 3.937 13 N -0.684 5.684 14 C 0.098 3.902 15 H 0.052 0.948 16 C -0.108 4.108 17 C -0.114 4.114 18 C -0.119 4.119 19 C -0.106 4.106 20 C -0.050 4.050 21 H 0.066 0.934 22 C -0.172 4.172 23 C -0.171 4.171 24 C -0.178 4.178 25 H 0.280 0.720 26 H 0.390 0.610 27 H 0.109 0.891 28 H 0.073 0.927 29 H 0.343 0.657 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.116 0.884 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.312 -4.493 2.482 26.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.212 4.212 3 Si 0.785 3.215 4 H -0.180 1.180 5 H -0.156 1.156 6 H -0.198 1.198 7 C -0.460 4.460 8 H 0.073 0.927 9 N -0.232 5.232 10 C 0.236 3.764 11 O -0.499 6.499 12 C -0.070 4.070 13 N -0.319 5.319 14 C -0.011 4.011 15 H 0.070 0.930 16 C -0.147 4.147 17 C -0.152 4.152 18 C -0.156 4.156 19 C -0.143 4.143 20 C -0.069 4.069 21 H 0.084 0.916 22 C -0.190 4.190 23 C -0.207 4.207 24 C -0.215 4.215 25 H 0.089 0.911 26 H 0.225 0.775 27 H 0.127 0.873 28 H 0.090 0.910 29 H 0.164 0.836 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.134 0.866 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 25.645 -5.170 1.810 26.224 hybrid contribution -0.700 1.085 0.855 1.549 sum 24.945 -4.086 2.666 25.418 Atomic orbital electron populations 1.69808 1.08137 1.29291 1.50186 1.26119 0.96475 1.02694 0.95959 0.85365 0.79474 0.76696 0.79996 1.18042 1.15577 1.19832 1.19017 0.81481 0.94974 1.50523 0.92749 1.42030 1.05844 1.07555 1.67759 1.20982 0.90952 0.83324 0.81134 1.90539 1.71378 1.32835 1.55129 1.21667 0.89525 0.92257 1.03520 1.60179 1.08405 1.11813 1.51470 1.21593 0.85403 0.97463 0.96644 0.93025 1.21557 0.95977 1.01700 0.95433 1.21516 0.93929 0.98433 1.01286 1.21561 1.00982 0.97640 0.95456 1.21643 0.92743 1.02626 0.97337 1.20757 0.96640 0.97036 0.92482 0.91575 1.22360 1.00142 1.03261 0.93254 1.23203 0.98110 1.00725 0.98699 1.22994 1.03568 0.91748 1.03152 0.91084 0.77488 0.87256 0.90951 0.83559 0.92754 0.92583 0.91371 0.91167 0.90404 0.92430 0.90898 0.90813 0.90073 0.86595 0.89088 0.89279 0.87861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.96 13.96 21.67 0.30 -56.66 16 2 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 3 Si 0.96 39.28 27.73 68.60 1.90 41.18 16 4 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 5 H -0.23 -8.02 6.52 99.48 0.65 -7.37 16 6 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 7 C -0.33 -19.81 10.16 84.04 0.85 -18.96 16 8 H 0.05 3.88 7.39 -2.91 -0.02 3.85 16 9 N -0.59 -28.69 5.09 -306.98 -1.56 -30.25 16 10 C 0.45 21.09 7.82 87.66 0.69 21.77 16 11 O -0.61 -35.37 15.78 -3.07 -0.05 -35.42 16 12 C 0.06 2.06 5.96 85.56 0.51 2.57 16 13 N -0.68 -21.70 5.93 -495.57 -2.94 -24.64 16 14 C 0.10 2.26 1.97 44.92 0.09 2.35 16 15 H 0.05 1.12 7.77 -2.39 -0.02 1.10 16 16 C -0.11 -2.32 5.45 30.60 0.17 -2.15 16 17 C -0.11 -1.74 5.92 30.60 0.18 -1.56 16 18 C -0.12 -1.62 5.92 30.59 0.18 -1.44 16 19 C -0.11 -1.52 3.78 30.59 0.12 -1.41 16 20 C -0.05 -1.01 2.13 -10.79 -0.02 -1.04 16 21 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 22 C -0.17 -3.60 5.33 -10.80 -0.06 -3.66 16 23 C -0.17 -2.79 9.50 30.61 0.29 -2.50 16 24 C -0.18 -3.21 9.96 30.61 0.30 -2.91 16 25 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 26 H 0.39 15.68 5.76 -92.71 -0.53 15.15 16 27 H 0.11 3.12 7.59 -2.38 -0.02 3.10 16 28 H 0.07 1.98 8.05 -2.38 -0.02 1.96 16 29 H 0.34 11.80 5.95 -89.70 -0.53 11.26 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.25 7.60 -2.39 -0.02 1.23 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 0.97 7.25 -2.39 -0.02 0.95 16 37 H 0.07 0.93 7.19 -2.39 -0.02 0.92 16 38 H 0.08 2.08 6.43 -2.39 -0.02 2.07 16 39 H 0.12 1.51 5.82 -2.39 -0.01 1.49 16 40 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 42 H 0.10 1.64 7.96 -2.39 -0.02 1.62 16 Total: -1.00 -74.20 326.83 1.31 -72.89 By element: Atomic # 1 Polarization: 42.24 SS G_CDS: -0.11 Total: 42.13 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 3.77 Total: -9.24 kcal Atomic # 7 Polarization: -107.35 SS G_CDS: -4.20 Total: -111.55 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -0.05 Total: -35.42 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 1.90 Total: 41.18 kcal Total: -74.20 1.31 -72.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695839586.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.752 kcal (2) G-P(sol) polarization free energy of solvation -74.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds