Wall clock time and date at job start Mon Mar 30 2020 05:34:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86798 * 119.99828 * 2 1
4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1
5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1
6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1
7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3
8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1
9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1
10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2
11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7
12 12 H 1.09002 * 109.47196 * 304.99671 * 11 10 9
13 13 N 1.46898 * 109.47386 * 64.99548 * 11 10 9
14 14 C 1.50701 * 109.47011 * 184.99954 * 11 10 9
15 15 O 1.21281 * 119.99748 * 259.99378 * 14 11 10
16 16 N 1.34779 * 120.00151 * 79.99887 * 14 11 10
17 17 C 1.46492 * 119.99683 * 180.02562 * 16 14 11
18 18 C 1.53001 * 109.46957 * 180.02562 * 17 16 14
19 19 H 1.08998 * 110.67442 * 51.76305 * 18 17 16
20 20 C 1.54891 * 110.75488 * 288.32824 * 18 17 16
21 21 C 1.54270 * 104.19705 * 203.73938 * 20 18 17
22 22 H 1.08994 * 117.76292 * 163.96614 * 21 20 18
23 23 C 1.53002 * 118.20075 * 319.43522 * 21 20 18
24 24 C 1.53008 * 60.38003 * 93.61048 * 23 21 20
25 25 H 1.09001 * 119.29213 * 112.24365 * 24 23 21
26 26 C 1.54263 * 118.20043 * 266.38348 * 24 23 21
27 27 H 0.97001 * 119.99934 * 179.97438 * 1 2 3
28 28 H 1.09001 * 109.46665 * 299.99501 * 9 7 2
29 29 H 1.08993 * 109.47304 * 59.99945 * 9 7 2
30 30 H 1.09001 * 109.47002 * 299.99404 * 10 9 7
31 31 H 1.09001 * 109.46801 * 59.99558 * 10 9 7
32 32 H 1.00897 * 111.00106 * 296.05249 * 13 11 10
33 33 H 1.00908 * 110.99685 * 60.00149 * 13 11 10
34 34 H 0.97001 * 119.99569 * 0.02562 * 16 14 11
35 35 H 1.09002 * 109.47689 * 299.99342 * 17 16 14
36 36 H 1.08999 * 109.47665 * 59.99899 * 17 16 14
37 37 H 1.09000 * 110.48643 * 322.42120 * 20 18 17
38 38 H 1.09000 * 110.48950 * 85.06446 * 20 18 17
39 39 H 1.09007 * 117.45597 * 346.01278 * 23 21 20
40 40 H 1.08996 * 117.44271 * 201.21809 * 23 21 20
41 41 H 1.08999 * 110.48304 * 281.89236 * 26 24 23
42 42 H 1.08997 * 110.48487 * 159.24640 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 1.2840 2.7465 -0.0006
5 1 3.1029 1.6964 -1.2125
6 1 3.1028 1.6966 1.2125
7 6 2.0045 -1.1940 0.0005
8 1 3.0846 -1.1940 0.0010
9 6 1.2511 -2.4991 0.0005
10 6 2.2454 -3.6621 0.0005
11 6 1.4805 -4.9871 0.0012
12 1 0.7886 -5.0068 0.8433
13 7 0.7282 -5.1189 -1.2537
14 6 2.4552 -6.1297 0.1250
15 8 2.7866 -6.7536 -0.8609
16 7 2.9585 -6.4585 1.3313
17 6 3.9065 -7.5689 1.4514
18 6 4.3192 -7.7308 2.9158
19 1 3.4410 -7.7951 3.5583
20 6 5.2434 -6.5689 3.3573
21 6 6.0362 -7.1475 4.5476
22 1 6.9355 -6.6189 4.8635
23 6 5.2903 -8.0245 5.5552
24 6 6.0239 -8.6773 4.3818
25 1 6.9052 -9.2882 4.5772
26 6 5.2240 -8.9749 3.0968
27 1 -0.4850 -0.8401 -0.0004
28 1 0.6242 -2.5567 0.8904
29 1 0.6248 -2.5571 -0.8896
30 1 2.8720 -3.6043 -0.8895
31 1 2.8721 -3.6042 0.8905
32 1 0.0234 -4.4009 -1.3299
33 1 1.3478 -5.1034 -2.0500
34 1 2.6931 -5.9597 2.1198
35 1 3.4354 -8.4882 1.1034
36 1 4.7886 -7.3608 0.8459
37 1 5.9188 -6.2902 2.5485
38 1 4.6517 -5.7102 3.6745
39 1 4.2008 -8.0122 5.5227
40 1 5.7294 -8.1352 6.5467
41 1 4.6181 -9.8721 3.2238
42 1 5.8962 -9.0847 2.2458
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000698011403.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:34:08
Heat of formation + Delta-G solvation = -42.310434 kcal
Electronic energy + Delta-G solvation = -20061.107606 eV
Core-core repulsion = 17040.287871 eV
Total energy + Delta-G solvation = -3020.819736 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.27851 -39.36329 -35.79514 -34.99361 -33.10507 -31.78568 -29.75115 -28.55222
-27.24812 -25.42590 -23.53729 -22.47039 -21.04692 -20.22255 -19.84613 -19.38326
-17.52584 -16.63171 -16.48680 -15.97063 -15.35282 -14.81198 -14.56967 -14.02103
-13.83166 -13.76896 -13.58795 -13.38047 -13.11388 -12.70504 -12.47083 -12.30117
-11.69903 -11.65033 -11.35361 -11.30491 -11.26141 -10.95802 -10.84830 -10.36822
-10.28848 -10.14084 -10.09455 -9.83590 -9.40926 -8.98986 -8.71813 -8.41058
-8.25145 -6.43570 -4.14021 2.90460 3.22919 3.39989 3.41138 3.41503
3.60375 4.12050 4.29922 4.46444 4.48791 4.74220 4.79072 4.94309
5.09157 5.10147 5.14738 5.17341 5.32272 5.33053 5.45557 5.49941
5.57796 5.59869 5.65621 5.68386 5.70968 5.81317 5.92140 5.97386
6.07148 6.16275 6.37595 6.51099 6.71444 7.21222 7.32847 7.37704
7.65657 7.80197 8.11062 8.37308 8.43653 8.80095 9.57991 10.96806
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.019188 B = 0.003844 C = 0.003339
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1458.916662 B = 7283.024796 C = 8383.063909
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.910 5.910
2 C 0.016 3.984
3 Si 1.068 2.932
4 H -0.282 1.282
5 H -0.288 1.288
6 H -0.288 1.288
7 C -0.605 4.605
8 H 0.048 0.952
9 C 0.011 3.989
10 C -0.129 4.129
11 C 0.073 3.927
12 H 0.095 0.905
13 N -0.830 5.830
14 C 0.525 3.475
15 O -0.539 6.539
16 N -0.733 5.733
17 C 0.131 3.869
18 C -0.111 4.111
19 H 0.084 0.916
20 C -0.092 4.092
21 C -0.165 4.165
22 H 0.109 0.891
23 C -0.156 4.156
24 C -0.170 4.170
25 H 0.109 0.891
26 C -0.086 4.086
27 H 0.268 0.732
28 H 0.009 0.991
29 H 0.009 0.991
30 H 0.056 0.944
31 H 0.057 0.943
32 H 0.352 0.648
33 H 0.346 0.654
34 H 0.401 0.599
35 H 0.066 0.934
36 H 0.066 0.934
37 H 0.077 0.923
38 H 0.071 0.929
39 H 0.092 0.908
40 H 0.097 0.903
41 H 0.070 0.930
42 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.602 -16.314 9.508 21.184
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.546 5.546
2 C -0.188 4.188
3 Si 0.896 3.104
4 H -0.207 1.207
5 H -0.214 1.214
6 H -0.214 1.214
7 C -0.643 4.643
8 H 0.066 0.934
9 C -0.026 4.026
10 C -0.169 4.169
11 C -0.042 4.042
12 H 0.113 0.887
13 N -0.362 5.362
14 C 0.312 3.688
15 O -0.415 6.415
16 N -0.387 5.387
17 C 0.007 3.993
18 C -0.129 4.129
19 H 0.103 0.897
20 C -0.130 4.130
21 C -0.183 4.183
22 H 0.127 0.873
23 C -0.193 4.193
24 C -0.188 4.188
25 H 0.127 0.873
26 C -0.124 4.124
27 H 0.079 0.921
28 H 0.027 0.973
29 H 0.027 0.973
30 H 0.075 0.925
31 H 0.076 0.924
32 H 0.166 0.834
33 H 0.160 0.840
34 H 0.235 0.765
35 H 0.084 0.916
36 H 0.085 0.915
37 H 0.095 0.905
38 H 0.090 0.910
39 H 0.111 0.889
40 H 0.115 0.885
41 H 0.088 0.912
42 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 9.419 -15.846 9.038 20.530
hybrid contribution 0.621 -0.477 0.306 0.841
sum 10.040 -16.323 9.344 21.321
Atomic orbital electron populations
1.70800 1.06853 1.30583 1.46367 1.25858 0.96532 1.02770 0.93637
0.83548 0.74920 0.75334 0.76557 1.20684 1.21430 1.21420 1.22003
0.94279 0.91896 1.56101 0.93364 1.19228 0.94381 0.92938 0.96058
1.22237 0.99557 0.93435 1.01700 1.21493 0.94749 0.92485 0.95507
0.88710 1.58739 1.18459 1.55692 1.03290 1.20815 0.81076 0.84393
0.82547 1.90635 1.60278 1.53429 1.37134 1.45981 1.47171 1.35441
1.10074 1.21251 0.92863 0.89960 0.95243 1.22401 0.98583 0.96162
0.95779 0.89747 1.22020 0.97512 0.97367 0.96071 1.23145 1.02167
0.93310 0.99641 0.87278 1.22927 0.99646 1.02727 0.93993 1.23109
1.02362 0.96468 0.96856 0.87283 1.21871 0.97431 0.97102 0.96021
0.92114 0.97256 0.97326 0.92540 0.92378 0.83352 0.84036 0.76502
0.91599 0.91546 0.90458 0.91022 0.88919 0.88461 0.91167 0.90462
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -27.29 13.65 55.43 0.76 -26.54 16
2 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16
3 Si 1.07 24.96 29.90 -169.99 -5.08 19.87 16
4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
5 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16
6 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16
7 C -0.60 -16.84 9.11 -34.44 -0.31 -17.15 16
8 H 0.05 1.34 7.74 -52.48 -0.41 0.93 16
9 C 0.01 0.27 4.05 -27.88 -0.11 0.15 16
10 C -0.13 -2.57 4.78 -26.73 -0.13 -2.69 16
11 C 0.07 1.25 3.21 -68.87 -0.22 1.02 16
12 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16
13 N -0.83 -14.43 8.94 -5.66 -0.05 -14.48 16
14 C 0.53 8.76 7.08 -10.98 -0.08 8.68 16
15 O -0.54 -10.69 16.25 5.56 0.09 -10.60 16
16 N -0.73 -9.39 5.48 -60.30 -0.33 -9.72 16
17 C 0.13 1.45 5.11 -4.05 -0.02 1.43 16
18 C -0.11 -0.95 2.43 -88.62 -0.22 -1.17 16
19 H 0.08 0.70 7.39 -51.93 -0.38 0.32 16
20 C -0.09 -0.83 6.14 -25.07 -0.15 -0.98 16
21 C -0.16 -1.36 7.06 -89.49 -0.63 -1.99 16
22 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16
23 C -0.16 -1.17 9.83 -26.73 -0.26 -1.43 16
24 C -0.17 -1.30 7.06 -89.49 -0.63 -1.93 16
25 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16
26 C -0.09 -0.67 6.21 -25.07 -0.16 -0.83 16
27 H 0.27 7.95 7.22 -40.82 -0.29 7.65 16
28 H 0.01 0.23 8.01 -51.93 -0.42 -0.18 16
29 H 0.01 0.21 6.73 -51.93 -0.35 -0.14 16
30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16
31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
32 H 0.35 6.04 7.55 -39.29 -0.30 5.74 16
33 H 0.35 6.14 8.58 -39.29 -0.34 5.81 16
34 H 0.40 4.38 8.47 -40.82 -0.35 4.03 16
35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
36 H 0.07 0.80 7.99 -51.93 -0.41 0.39 16
37 H 0.08 0.75 7.94 -51.93 -0.41 0.33 16
38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
39 H 0.09 0.70 7.21 -51.93 -0.37 0.32 16
40 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16
41 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16
42 H 0.08 0.59 8.05 -51.93 -0.42 0.18 16
LS Contribution 339.23 15.07 5.11 5.11
Total: -1.00 -31.97 339.23 -9.58 -41.54
By element:
Atomic # 1 Polarization: 18.37 SS G_CDS: -7.05 Total: 11.32 kcal
Atomic # 6 Polarization: -13.50 SS G_CDS: -3.02 Total: -16.52 kcal
Atomic # 7 Polarization: -51.11 SS G_CDS: 0.38 Total: -50.74 kcal
Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal
Atomic # 14 Polarization: 24.96 SS G_CDS: -5.08 Total: 19.87 kcal
Total LS contribution 5.11 Total: 5.11 kcal
Total: -31.97 -9.58 -41.54 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000698011403.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -0.767 kcal
(2) G-P(sol) polarization free energy of solvation -31.967 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.733 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.544 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.310 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds