Wall clock time and date at job start Mon Mar 30 2020 05:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47196 * 304.99671 * 11 10 9 13 13 N 1.46898 * 109.47386 * 64.99548 * 11 10 9 14 14 C 1.50701 * 109.47011 * 184.99954 * 11 10 9 15 15 O 1.21281 * 119.99748 * 259.99378 * 14 11 10 16 16 N 1.34779 * 120.00151 * 79.99887 * 14 11 10 17 17 C 1.46492 * 119.99683 * 180.02562 * 16 14 11 18 18 C 1.53001 * 109.46957 * 180.02562 * 17 16 14 19 19 H 1.08998 * 110.67442 * 51.76305 * 18 17 16 20 20 C 1.54891 * 110.75488 * 288.32824 * 18 17 16 21 21 C 1.54270 * 104.19705 * 203.73938 * 20 18 17 22 22 H 1.08994 * 117.76292 * 163.96614 * 21 20 18 23 23 C 1.53002 * 118.20075 * 319.43522 * 21 20 18 24 24 C 1.53008 * 60.38003 * 93.61048 * 23 21 20 25 25 H 1.09001 * 119.29213 * 112.24365 * 24 23 21 26 26 C 1.54263 * 118.20043 * 266.38348 * 24 23 21 27 27 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 29 29 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 30 30 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 31 31 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 32 32 H 1.00897 * 111.00106 * 296.05249 * 13 11 10 33 33 H 1.00908 * 110.99685 * 60.00149 * 13 11 10 34 34 H 0.97001 * 119.99569 * 0.02562 * 16 14 11 35 35 H 1.09002 * 109.47689 * 299.99342 * 17 16 14 36 36 H 1.08999 * 109.47665 * 59.99899 * 17 16 14 37 37 H 1.09000 * 110.48643 * 322.42120 * 20 18 17 38 38 H 1.09000 * 110.48950 * 85.06446 * 20 18 17 39 39 H 1.09007 * 117.45597 * 346.01278 * 23 21 20 40 40 H 1.08996 * 117.44271 * 201.21809 * 23 21 20 41 41 H 1.08999 * 110.48304 * 281.89236 * 26 24 23 42 42 H 1.08997 * 110.48487 * 159.24640 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4805 -4.9871 0.0012 12 1 0.7886 -5.0068 0.8433 13 7 0.7282 -5.1189 -1.2537 14 6 2.4552 -6.1297 0.1250 15 8 2.7866 -6.7536 -0.8609 16 7 2.9585 -6.4585 1.3313 17 6 3.9065 -7.5689 1.4514 18 6 4.3192 -7.7308 2.9158 19 1 3.4410 -7.7951 3.5583 20 6 5.2434 -6.5689 3.3573 21 6 6.0362 -7.1475 4.5476 22 1 6.9355 -6.6189 4.8635 23 6 5.2903 -8.0245 5.5552 24 6 6.0239 -8.6773 4.3818 25 1 6.9052 -9.2882 4.5772 26 6 5.2240 -8.9749 3.0968 27 1 -0.4850 -0.8401 -0.0004 28 1 0.6242 -2.5567 0.8904 29 1 0.6248 -2.5571 -0.8896 30 1 2.8720 -3.6043 -0.8895 31 1 2.8721 -3.6042 0.8905 32 1 0.0234 -4.4009 -1.3299 33 1 1.3478 -5.1034 -2.0500 34 1 2.6931 -5.9597 2.1198 35 1 3.4354 -8.4882 1.1034 36 1 4.7886 -7.3608 0.8459 37 1 5.9188 -6.2902 2.5485 38 1 4.6517 -5.7102 3.6745 39 1 4.2008 -8.0122 5.5227 40 1 5.7294 -8.1352 6.5467 41 1 4.6181 -9.8721 3.2238 42 1 5.8962 -9.0847 2.2458 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698011403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:08 Heat of formation + Delta-G solvation = -42.310434 kcal Electronic energy + Delta-G solvation = -20061.107606 eV Core-core repulsion = 17040.287871 eV Total energy + Delta-G solvation = -3020.819736 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.27851 -39.36329 -35.79514 -34.99361 -33.10507 -31.78568 -29.75115 -28.55222 -27.24812 -25.42590 -23.53729 -22.47039 -21.04692 -20.22255 -19.84613 -19.38326 -17.52584 -16.63171 -16.48680 -15.97063 -15.35282 -14.81198 -14.56967 -14.02103 -13.83166 -13.76896 -13.58795 -13.38047 -13.11388 -12.70504 -12.47083 -12.30117 -11.69903 -11.65033 -11.35361 -11.30491 -11.26141 -10.95802 -10.84830 -10.36822 -10.28848 -10.14084 -10.09455 -9.83590 -9.40926 -8.98986 -8.71813 -8.41058 -8.25145 -6.43570 -4.14021 2.90460 3.22919 3.39989 3.41138 3.41503 3.60375 4.12050 4.29922 4.46444 4.48791 4.74220 4.79072 4.94309 5.09157 5.10147 5.14738 5.17341 5.32272 5.33053 5.45557 5.49941 5.57796 5.59869 5.65621 5.68386 5.70968 5.81317 5.92140 5.97386 6.07148 6.16275 6.37595 6.51099 6.71444 7.21222 7.32847 7.37704 7.65657 7.80197 8.11062 8.37308 8.43653 8.80095 9.57991 10.96806 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019188 B = 0.003844 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.916662 B = 7283.024796 C = 8383.063909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.016 3.984 3 Si 1.068 2.932 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.605 4.605 8 H 0.048 0.952 9 C 0.011 3.989 10 C -0.129 4.129 11 C 0.073 3.927 12 H 0.095 0.905 13 N -0.830 5.830 14 C 0.525 3.475 15 O -0.539 6.539 16 N -0.733 5.733 17 C 0.131 3.869 18 C -0.111 4.111 19 H 0.084 0.916 20 C -0.092 4.092 21 C -0.165 4.165 22 H 0.109 0.891 23 C -0.156 4.156 24 C -0.170 4.170 25 H 0.109 0.891 26 C -0.086 4.086 27 H 0.268 0.732 28 H 0.009 0.991 29 H 0.009 0.991 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.352 0.648 33 H 0.346 0.654 34 H 0.401 0.599 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.070 0.930 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.602 -16.314 9.508 21.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.188 4.188 3 Si 0.896 3.104 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.643 4.643 8 H 0.066 0.934 9 C -0.026 4.026 10 C -0.169 4.169 11 C -0.042 4.042 12 H 0.113 0.887 13 N -0.362 5.362 14 C 0.312 3.688 15 O -0.415 6.415 16 N -0.387 5.387 17 C 0.007 3.993 18 C -0.129 4.129 19 H 0.103 0.897 20 C -0.130 4.130 21 C -0.183 4.183 22 H 0.127 0.873 23 C -0.193 4.193 24 C -0.188 4.188 25 H 0.127 0.873 26 C -0.124 4.124 27 H 0.079 0.921 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.166 0.834 33 H 0.160 0.840 34 H 0.235 0.765 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.115 0.885 41 H 0.088 0.912 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.419 -15.846 9.038 20.530 hybrid contribution 0.621 -0.477 0.306 0.841 sum 10.040 -16.323 9.344 21.321 Atomic orbital electron populations 1.70800 1.06853 1.30583 1.46367 1.25858 0.96532 1.02770 0.93637 0.83548 0.74920 0.75334 0.76557 1.20684 1.21430 1.21420 1.22003 0.94279 0.91896 1.56101 0.93364 1.19228 0.94381 0.92938 0.96058 1.22237 0.99557 0.93435 1.01700 1.21493 0.94749 0.92485 0.95507 0.88710 1.58739 1.18459 1.55692 1.03290 1.20815 0.81076 0.84393 0.82547 1.90635 1.60278 1.53429 1.37134 1.45981 1.47171 1.35441 1.10074 1.21251 0.92863 0.89960 0.95243 1.22401 0.98583 0.96162 0.95779 0.89747 1.22020 0.97512 0.97367 0.96071 1.23145 1.02167 0.93310 0.99641 0.87278 1.22927 0.99646 1.02727 0.93993 1.23109 1.02362 0.96468 0.96856 0.87283 1.21871 0.97431 0.97102 0.96021 0.92114 0.97256 0.97326 0.92540 0.92378 0.83352 0.84036 0.76502 0.91599 0.91546 0.90458 0.91022 0.88919 0.88461 0.91167 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.29 13.65 55.43 0.76 -26.54 16 2 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 3 Si 1.07 24.96 29.90 -169.99 -5.08 19.87 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 6 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.60 -16.84 9.11 -34.44 -0.31 -17.15 16 8 H 0.05 1.34 7.74 -52.48 -0.41 0.93 16 9 C 0.01 0.27 4.05 -27.88 -0.11 0.15 16 10 C -0.13 -2.57 4.78 -26.73 -0.13 -2.69 16 11 C 0.07 1.25 3.21 -68.87 -0.22 1.02 16 12 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 13 N -0.83 -14.43 8.94 -5.66 -0.05 -14.48 16 14 C 0.53 8.76 7.08 -10.98 -0.08 8.68 16 15 O -0.54 -10.69 16.25 5.56 0.09 -10.60 16 16 N -0.73 -9.39 5.48 -60.30 -0.33 -9.72 16 17 C 0.13 1.45 5.11 -4.05 -0.02 1.43 16 18 C -0.11 -0.95 2.43 -88.62 -0.22 -1.17 16 19 H 0.08 0.70 7.39 -51.93 -0.38 0.32 16 20 C -0.09 -0.83 6.14 -25.07 -0.15 -0.98 16 21 C -0.16 -1.36 7.06 -89.49 -0.63 -1.99 16 22 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 23 C -0.16 -1.17 9.83 -26.73 -0.26 -1.43 16 24 C -0.17 -1.30 7.06 -89.49 -0.63 -1.93 16 25 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 26 C -0.09 -0.67 6.21 -25.07 -0.16 -0.83 16 27 H 0.27 7.95 7.22 -40.82 -0.29 7.65 16 28 H 0.01 0.23 8.01 -51.93 -0.42 -0.18 16 29 H 0.01 0.21 6.73 -51.93 -0.35 -0.14 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.35 6.04 7.55 -39.29 -0.30 5.74 16 33 H 0.35 6.14 8.58 -39.29 -0.34 5.81 16 34 H 0.40 4.38 8.47 -40.82 -0.35 4.03 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.80 7.99 -51.93 -0.41 0.39 16 37 H 0.08 0.75 7.94 -51.93 -0.41 0.33 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.70 7.21 -51.93 -0.37 0.32 16 40 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.59 8.05 -51.93 -0.42 0.18 16 LS Contribution 339.23 15.07 5.11 5.11 Total: -1.00 -31.97 339.23 -9.58 -41.54 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -7.05 Total: 11.32 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -3.02 Total: -16.52 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: 0.38 Total: -50.74 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -5.08 Total: 19.87 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.97 -9.58 -41.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698011403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.767 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds