Wall clock time and date at job start Mon Mar 30 2020 05:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47196 * 304.99671 * 11 10 9 13 13 N 1.46898 * 109.47386 * 64.99548 * 11 10 9 14 14 C 1.50701 * 109.47011 * 184.99954 * 11 10 9 15 15 O 1.21281 * 119.99748 * 259.99378 * 14 11 10 16 16 N 1.34779 * 120.00151 * 79.99887 * 14 11 10 17 17 C 1.46492 * 119.99683 * 180.02562 * 16 14 11 18 18 C 1.53001 * 109.46957 * 180.02562 * 17 16 14 19 19 H 1.08998 * 110.67442 * 51.76305 * 18 17 16 20 20 C 1.54891 * 110.75488 * 288.32824 * 18 17 16 21 21 C 1.54270 * 104.19705 * 203.73938 * 20 18 17 22 22 H 1.08994 * 117.76292 * 163.96614 * 21 20 18 23 23 C 1.53002 * 118.20075 * 319.43522 * 21 20 18 24 24 C 1.53008 * 60.38003 * 93.61048 * 23 21 20 25 25 H 1.09001 * 119.29213 * 112.24365 * 24 23 21 26 26 C 1.54263 * 118.20043 * 266.38348 * 24 23 21 27 27 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 29 29 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 30 30 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 31 31 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 32 32 H 1.00897 * 111.00106 * 296.05249 * 13 11 10 33 33 H 1.00908 * 110.99685 * 60.00149 * 13 11 10 34 34 H 0.97001 * 119.99569 * 0.02562 * 16 14 11 35 35 H 1.09002 * 109.47689 * 299.99342 * 17 16 14 36 36 H 1.08999 * 109.47665 * 59.99899 * 17 16 14 37 37 H 1.09000 * 110.48643 * 322.42120 * 20 18 17 38 38 H 1.09000 * 110.48950 * 85.06446 * 20 18 17 39 39 H 1.09007 * 117.45597 * 346.01278 * 23 21 20 40 40 H 1.08996 * 117.44271 * 201.21809 * 23 21 20 41 41 H 1.08999 * 110.48304 * 281.89236 * 26 24 23 42 42 H 1.08997 * 110.48487 * 159.24640 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4805 -4.9871 0.0012 12 1 0.7886 -5.0068 0.8433 13 7 0.7282 -5.1189 -1.2537 14 6 2.4552 -6.1297 0.1250 15 8 2.7866 -6.7536 -0.8609 16 7 2.9585 -6.4585 1.3313 17 6 3.9065 -7.5689 1.4514 18 6 4.3192 -7.7308 2.9158 19 1 3.4410 -7.7951 3.5583 20 6 5.2434 -6.5689 3.3573 21 6 6.0362 -7.1475 4.5476 22 1 6.9355 -6.6189 4.8635 23 6 5.2903 -8.0245 5.5552 24 6 6.0239 -8.6773 4.3818 25 1 6.9052 -9.2882 4.5772 26 6 5.2240 -8.9749 3.0968 27 1 -0.4850 -0.8401 -0.0004 28 1 0.6242 -2.5567 0.8904 29 1 0.6248 -2.5571 -0.8896 30 1 2.8720 -3.6043 -0.8895 31 1 2.8721 -3.6042 0.8905 32 1 0.0234 -4.4009 -1.3299 33 1 1.3478 -5.1034 -2.0500 34 1 2.6931 -5.9597 2.1198 35 1 3.4354 -8.4882 1.1034 36 1 4.7886 -7.3608 0.8459 37 1 5.9188 -6.2902 2.5485 38 1 4.6517 -5.7102 3.6745 39 1 4.2008 -8.0122 5.5227 40 1 5.7294 -8.1352 6.5467 41 1 4.6181 -9.8721 3.2238 42 1 5.8962 -9.0847 2.2458 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698011403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:08 Heat of formation + Delta-G solvation = -63.619130 kcal Electronic energy + Delta-G solvation = -20062.031621 eV Core-core repulsion = 17040.287871 eV Total energy + Delta-G solvation = -3021.743750 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.22083 -40.42173 -37.35399 -36.14945 -35.08383 -32.66497 -31.53994 -29.20799 -28.53184 -26.82624 -25.21739 -23.33012 -22.66983 -21.36603 -20.56013 -20.22384 -19.18100 -18.25120 -17.57047 -16.78885 -16.45828 -16.12221 -15.91860 -15.64735 -15.46589 -15.16039 -14.61498 -14.40912 -14.13246 -14.07419 -13.82013 -13.48794 -13.15787 -13.00453 -12.61989 -12.32566 -12.15287 -12.05334 -11.97335 -11.92712 -11.89799 -11.68437 -10.97940 -10.92445 -10.69307 -10.55250 -10.44941 -10.13582 -9.74467 -8.68677 -6.40401 1.51927 1.55541 1.59397 1.79075 2.09092 2.55331 2.80290 3.14772 3.46354 3.58817 3.64816 3.73561 3.77559 4.00884 4.09800 4.13165 4.17297 4.30650 4.47036 4.50490 4.51365 4.64598 4.69265 4.72212 4.78829 4.88808 4.92339 5.02189 5.04114 5.14968 5.26868 5.29145 5.33160 5.37378 5.39837 5.46005 5.96340 5.97304 6.16976 6.36910 6.47722 6.58186 7.17793 7.39769 8.72334 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019188 B = 0.003844 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.916662 B = 7283.024796 C = 8383.063909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.035 4.035 3 Si 1.114 2.886 4 H -0.283 1.283 5 H -0.273 1.273 6 H -0.268 1.268 7 C -0.622 4.622 8 H 0.046 0.954 9 C 0.014 3.986 10 C -0.113 4.113 11 C 0.080 3.920 12 H 0.110 0.890 13 N -0.829 5.829 14 C 0.525 3.475 15 O -0.573 6.573 16 N -0.717 5.717 17 C 0.132 3.868 18 C -0.100 4.100 19 H 0.093 0.907 20 C -0.094 4.094 21 C -0.176 4.176 22 H 0.111 0.889 23 C -0.152 4.152 24 C -0.168 4.168 25 H 0.119 0.881 26 C -0.086 4.086 27 H 0.258 0.742 28 H 0.000 1.000 29 H -0.002 1.002 30 H 0.042 0.958 31 H 0.066 0.934 32 H 0.351 0.649 33 H 0.344 0.656 34 H 0.412 0.588 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.602 -16.841 10.763 22.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.233 4.233 3 Si 0.935 3.065 4 H -0.209 1.209 5 H -0.199 1.199 6 H -0.193 1.193 7 C -0.660 4.660 8 H 0.064 0.936 9 C -0.023 4.023 10 C -0.153 4.153 11 C -0.036 4.036 12 H 0.128 0.872 13 N -0.361 5.361 14 C 0.312 3.688 15 O -0.452 6.452 16 N -0.369 5.369 17 C 0.008 3.992 18 C -0.119 4.119 19 H 0.111 0.889 20 C -0.131 4.131 21 C -0.194 4.194 22 H 0.129 0.871 23 C -0.189 4.189 24 C -0.186 4.186 25 H 0.136 0.864 26 C -0.124 4.124 27 H 0.068 0.932 28 H 0.018 0.982 29 H 0.017 0.983 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.166 0.834 33 H 0.157 0.843 34 H 0.248 0.752 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.111 0.889 40 H 0.126 0.874 41 H 0.097 0.903 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.429 -16.399 10.334 22.012 hybrid contribution 0.316 -0.358 -0.066 0.482 sum 10.745 -16.757 10.268 22.399 Atomic orbital electron populations 1.70923 1.07808 1.30079 1.48422 1.27306 0.96629 1.06603 0.92763 0.82970 0.74188 0.71425 0.77906 1.20855 1.19861 1.19346 1.22452 0.94538 0.93580 1.55432 0.93589 1.19136 0.94751 0.93456 0.94982 1.22006 0.98505 0.93402 1.01419 1.21432 0.94848 0.91331 0.95959 0.87187 1.58758 1.18389 1.55514 1.03393 1.20659 0.80931 0.84082 0.83154 1.90624 1.61464 1.54632 1.38469 1.45893 1.46320 1.35420 1.09287 1.21348 0.91912 0.89000 0.96916 1.22320 0.98994 0.96628 0.93930 0.88866 1.21997 0.97478 0.97411 0.96257 1.23158 1.02504 0.93816 0.99939 0.87088 1.23011 0.99718 1.01808 0.94380 1.23177 1.02675 0.95964 0.96788 0.86353 1.21880 0.97385 0.96866 0.96237 0.93206 0.98205 0.98330 0.93869 0.91533 0.83397 0.84291 0.75168 0.91805 0.92493 0.91447 0.91381 0.88857 0.87359 0.90274 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.44 13.65 21.45 0.29 -56.14 16 2 C -0.03 -1.98 5.46 84.65 0.46 -1.52 16 3 Si 1.11 49.44 29.90 68.60 2.05 51.49 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 6 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.62 -34.57 9.11 25.60 0.23 -34.33 16 8 H 0.05 2.52 7.74 -2.91 -0.02 2.50 16 9 C 0.01 0.68 4.05 29.85 0.12 0.80 16 10 C -0.11 -4.44 4.78 30.60 0.15 -4.29 16 11 C 0.08 2.65 3.21 44.17 0.14 2.79 16 12 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 13 N -0.83 -28.57 8.94 -171.81 -1.54 -30.11 16 14 C 0.53 17.02 7.08 87.66 0.62 17.64 16 15 O -0.57 -22.46 16.25 -3.03 -0.05 -22.51 16 16 N -0.72 -17.34 5.48 -463.07 -2.54 -19.87 16 17 C 0.13 2.76 5.11 86.38 0.44 3.20 16 18 C -0.10 -1.55 2.43 -9.50 -0.02 -1.57 16 19 H 0.09 1.32 7.39 -2.39 -0.02 1.30 16 20 C -0.09 -1.57 6.14 31.67 0.19 -1.37 16 21 C -0.18 -2.61 7.06 -10.06 -0.07 -2.68 16 22 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 23 C -0.15 -1.93 9.83 30.60 0.30 -1.63 16 24 C -0.17 -2.21 7.06 -10.06 -0.07 -2.28 16 25 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 26 C -0.09 -1.17 6.21 31.67 0.20 -0.97 16 27 H 0.26 15.58 7.22 -92.71 -0.67 14.91 16 28 H 0.00 -0.02 8.01 -2.39 -0.02 -0.04 16 29 H 0.00 -0.08 6.73 -2.39 -0.02 -0.09 16 30 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.35 12.07 7.55 -89.70 -0.68 11.39 16 33 H 0.34 12.21 8.58 -89.69 -0.77 11.44 16 34 H 0.41 8.21 8.47 -92.71 -0.79 7.42 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.06 1.34 7.99 -2.39 -0.02 1.32 16 37 H 0.07 1.25 7.94 -2.39 -0.02 1.23 16 38 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.09 1.18 7.21 -2.38 -0.02 1.16 16 40 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16 42 H 0.08 1.06 8.05 -2.39 -0.02 1.04 16 Total: -1.00 -67.39 339.23 -0.19 -67.58 By element: Atomic # 1 Polarization: 36.87 SS G_CDS: -1.11 Total: 35.77 kcal Atomic # 6 Polarization: -28.89 SS G_CDS: 2.69 Total: -26.20 kcal Atomic # 7 Polarization: -102.35 SS G_CDS: -3.78 Total: -106.12 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.05 Total: -22.51 kcal Atomic # 14 Polarization: 49.44 SS G_CDS: 2.05 Total: 51.49 kcal Total: -67.39 -0.19 -67.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698011403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.957 kcal (2) G-P(sol) polarization free energy of solvation -67.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds