Wall clock time and date at job start Mon Mar 30 2020 05:34:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86798 * 119.99828 * 2 1
4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1
5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1
6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1
7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3
8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1
9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1
10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2
11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7
12 12 H 1.09002 * 109.47196 * 304.99671 * 11 10 9
13 13 N 1.46898 * 109.47386 * 64.99548 * 11 10 9
14 14 C 1.50701 * 109.47011 * 184.99954 * 11 10 9
15 15 O 1.21281 * 119.99748 * 259.99378 * 14 11 10
16 16 N 1.34779 * 120.00151 * 79.99887 * 14 11 10
17 17 C 1.46492 * 119.99683 * 180.02562 * 16 14 11
18 18 C 1.53001 * 109.46957 * 180.02562 * 17 16 14
19 19 H 1.08998 * 110.67442 * 51.76305 * 18 17 16
20 20 C 1.54891 * 110.75488 * 288.32824 * 18 17 16
21 21 C 1.54270 * 104.19705 * 203.73938 * 20 18 17
22 22 H 1.08994 * 117.76292 * 163.96614 * 21 20 18
23 23 C 1.53002 * 118.20075 * 319.43522 * 21 20 18
24 24 C 1.53008 * 60.38003 * 93.61048 * 23 21 20
25 25 H 1.09001 * 119.29213 * 112.24365 * 24 23 21
26 26 C 1.54263 * 118.20043 * 266.38348 * 24 23 21
27 27 H 0.97001 * 119.99934 * 179.97438 * 1 2 3
28 28 H 1.09001 * 109.46665 * 299.99501 * 9 7 2
29 29 H 1.08993 * 109.47304 * 59.99945 * 9 7 2
30 30 H 1.09001 * 109.47002 * 299.99404 * 10 9 7
31 31 H 1.09001 * 109.46801 * 59.99558 * 10 9 7
32 32 H 1.00897 * 111.00106 * 296.05249 * 13 11 10
33 33 H 1.00908 * 110.99685 * 60.00149 * 13 11 10
34 34 H 0.97001 * 119.99569 * 0.02562 * 16 14 11
35 35 H 1.09002 * 109.47689 * 299.99342 * 17 16 14
36 36 H 1.08999 * 109.47665 * 59.99899 * 17 16 14
37 37 H 1.09000 * 110.48643 * 322.42120 * 20 18 17
38 38 H 1.09000 * 110.48950 * 85.06446 * 20 18 17
39 39 H 1.09007 * 117.45597 * 346.01278 * 23 21 20
40 40 H 1.08996 * 117.44271 * 201.21809 * 23 21 20
41 41 H 1.08999 * 110.48304 * 281.89236 * 26 24 23
42 42 H 1.08997 * 110.48487 * 159.24640 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 1.2840 2.7465 -0.0006
5 1 3.1029 1.6964 -1.2125
6 1 3.1028 1.6966 1.2125
7 6 2.0045 -1.1940 0.0005
8 1 3.0846 -1.1940 0.0010
9 6 1.2511 -2.4991 0.0005
10 6 2.2454 -3.6621 0.0005
11 6 1.4805 -4.9871 0.0012
12 1 0.7886 -5.0068 0.8433
13 7 0.7282 -5.1189 -1.2537
14 6 2.4552 -6.1297 0.1250
15 8 2.7866 -6.7536 -0.8609
16 7 2.9585 -6.4585 1.3313
17 6 3.9065 -7.5689 1.4514
18 6 4.3192 -7.7308 2.9158
19 1 3.4410 -7.7951 3.5583
20 6 5.2434 -6.5689 3.3573
21 6 6.0362 -7.1475 4.5476
22 1 6.9355 -6.6189 4.8635
23 6 5.2903 -8.0245 5.5552
24 6 6.0239 -8.6773 4.3818
25 1 6.9052 -9.2882 4.5772
26 6 5.2240 -8.9749 3.0968
27 1 -0.4850 -0.8401 -0.0004
28 1 0.6242 -2.5567 0.8904
29 1 0.6248 -2.5571 -0.8896
30 1 2.8720 -3.6043 -0.8895
31 1 2.8721 -3.6042 0.8905
32 1 0.0234 -4.4009 -1.3299
33 1 1.3478 -5.1034 -2.0500
34 1 2.6931 -5.9597 2.1198
35 1 3.4354 -8.4882 1.1034
36 1 4.7886 -7.3608 0.8459
37 1 5.9188 -6.2902 2.5485
38 1 4.6517 -5.7102 3.6745
39 1 4.2008 -8.0122 5.5227
40 1 5.7294 -8.1352 6.5467
41 1 4.6181 -9.8721 3.2238
42 1 5.8962 -9.0847 2.2458
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000698011403.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:34:08
Heat of formation + Delta-G solvation = -63.619130 kcal
Electronic energy + Delta-G solvation = -20062.031621 eV
Core-core repulsion = 17040.287871 eV
Total energy + Delta-G solvation = -3021.743750 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-41.22083 -40.42173 -37.35399 -36.14945 -35.08383 -32.66497 -31.53994 -29.20799
-28.53184 -26.82624 -25.21739 -23.33012 -22.66983 -21.36603 -20.56013 -20.22384
-19.18100 -18.25120 -17.57047 -16.78885 -16.45828 -16.12221 -15.91860 -15.64735
-15.46589 -15.16039 -14.61498 -14.40912 -14.13246 -14.07419 -13.82013 -13.48794
-13.15787 -13.00453 -12.61989 -12.32566 -12.15287 -12.05334 -11.97335 -11.92712
-11.89799 -11.68437 -10.97940 -10.92445 -10.69307 -10.55250 -10.44941 -10.13582
-9.74467 -8.68677 -6.40401 1.51927 1.55541 1.59397 1.79075 2.09092
2.55331 2.80290 3.14772 3.46354 3.58817 3.64816 3.73561 3.77559
4.00884 4.09800 4.13165 4.17297 4.30650 4.47036 4.50490 4.51365
4.64598 4.69265 4.72212 4.78829 4.88808 4.92339 5.02189 5.04114
5.14968 5.26868 5.29145 5.33160 5.37378 5.39837 5.46005 5.96340
5.97304 6.16976 6.36910 6.47722 6.58186 7.17793 7.39769 8.72334
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.019188 B = 0.003844 C = 0.003339
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1458.916662 B = 7283.024796 C = 8383.063909
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.935 5.935
2 C -0.035 4.035
3 Si 1.114 2.886
4 H -0.283 1.283
5 H -0.273 1.273
6 H -0.268 1.268
7 C -0.622 4.622
8 H 0.046 0.954
9 C 0.014 3.986
10 C -0.113 4.113
11 C 0.080 3.920
12 H 0.110 0.890
13 N -0.829 5.829
14 C 0.525 3.475
15 O -0.573 6.573
16 N -0.717 5.717
17 C 0.132 3.868
18 C -0.100 4.100
19 H 0.093 0.907
20 C -0.094 4.094
21 C -0.176 4.176
22 H 0.111 0.889
23 C -0.152 4.152
24 C -0.168 4.168
25 H 0.119 0.881
26 C -0.086 4.086
27 H 0.258 0.742
28 H 0.000 1.000
29 H -0.002 1.002
30 H 0.042 0.958
31 H 0.066 0.934
32 H 0.351 0.649
33 H 0.344 0.656
34 H 0.412 0.588
35 H 0.064 0.936
36 H 0.057 0.943
37 H 0.067 0.933
38 H 0.068 0.932
39 H 0.093 0.907
40 H 0.108 0.892
41 H 0.079 0.921
42 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.602 -16.841 10.763 22.624
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.572 5.572
2 C -0.233 4.233
3 Si 0.935 3.065
4 H -0.209 1.209
5 H -0.199 1.199
6 H -0.193 1.193
7 C -0.660 4.660
8 H 0.064 0.936
9 C -0.023 4.023
10 C -0.153 4.153
11 C -0.036 4.036
12 H 0.128 0.872
13 N -0.361 5.361
14 C 0.312 3.688
15 O -0.452 6.452
16 N -0.369 5.369
17 C 0.008 3.992
18 C -0.119 4.119
19 H 0.111 0.889
20 C -0.131 4.131
21 C -0.194 4.194
22 H 0.129 0.871
23 C -0.189 4.189
24 C -0.186 4.186
25 H 0.136 0.864
26 C -0.124 4.124
27 H 0.068 0.932
28 H 0.018 0.982
29 H 0.017 0.983
30 H 0.061 0.939
31 H 0.085 0.915
32 H 0.166 0.834
33 H 0.157 0.843
34 H 0.248 0.752
35 H 0.082 0.918
36 H 0.075 0.925
37 H 0.086 0.914
38 H 0.086 0.914
39 H 0.111 0.889
40 H 0.126 0.874
41 H 0.097 0.903
42 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 10.429 -16.399 10.334 22.012
hybrid contribution 0.316 -0.358 -0.066 0.482
sum 10.745 -16.757 10.268 22.399
Atomic orbital electron populations
1.70923 1.07808 1.30079 1.48422 1.27306 0.96629 1.06603 0.92763
0.82970 0.74188 0.71425 0.77906 1.20855 1.19861 1.19346 1.22452
0.94538 0.93580 1.55432 0.93589 1.19136 0.94751 0.93456 0.94982
1.22006 0.98505 0.93402 1.01419 1.21432 0.94848 0.91331 0.95959
0.87187 1.58758 1.18389 1.55514 1.03393 1.20659 0.80931 0.84082
0.83154 1.90624 1.61464 1.54632 1.38469 1.45893 1.46320 1.35420
1.09287 1.21348 0.91912 0.89000 0.96916 1.22320 0.98994 0.96628
0.93930 0.88866 1.21997 0.97478 0.97411 0.96257 1.23158 1.02504
0.93816 0.99939 0.87088 1.23011 0.99718 1.01808 0.94380 1.23177
1.02675 0.95964 0.96788 0.86353 1.21880 0.97385 0.96866 0.96237
0.93206 0.98205 0.98330 0.93869 0.91533 0.83397 0.84291 0.75168
0.91805 0.92493 0.91447 0.91381 0.88857 0.87359 0.90274 0.90504
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -56.44 13.65 21.45 0.29 -56.14 16
2 C -0.03 -1.98 5.46 84.65 0.46 -1.52 16
3 Si 1.11 49.44 29.90 68.60 2.05 51.49 16
4 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16
5 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16
6 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16
7 C -0.62 -34.57 9.11 25.60 0.23 -34.33 16
8 H 0.05 2.52 7.74 -2.91 -0.02 2.50 16
9 C 0.01 0.68 4.05 29.85 0.12 0.80 16
10 C -0.11 -4.44 4.78 30.60 0.15 -4.29 16
11 C 0.08 2.65 3.21 44.17 0.14 2.79 16
12 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16
13 N -0.83 -28.57 8.94 -171.81 -1.54 -30.11 16
14 C 0.53 17.02 7.08 87.66 0.62 17.64 16
15 O -0.57 -22.46 16.25 -3.03 -0.05 -22.51 16
16 N -0.72 -17.34 5.48 -463.07 -2.54 -19.87 16
17 C 0.13 2.76 5.11 86.38 0.44 3.20 16
18 C -0.10 -1.55 2.43 -9.50 -0.02 -1.57 16
19 H 0.09 1.32 7.39 -2.39 -0.02 1.30 16
20 C -0.09 -1.57 6.14 31.67 0.19 -1.37 16
21 C -0.18 -2.61 7.06 -10.06 -0.07 -2.68 16
22 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16
23 C -0.15 -1.93 9.83 30.60 0.30 -1.63 16
24 C -0.17 -2.21 7.06 -10.06 -0.07 -2.28 16
25 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16
26 C -0.09 -1.17 6.21 31.67 0.20 -0.97 16
27 H 0.26 15.58 7.22 -92.71 -0.67 14.91 16
28 H 0.00 -0.02 8.01 -2.39 -0.02 -0.04 16
29 H 0.00 -0.08 6.73 -2.39 -0.02 -0.09 16
30 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16
31 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16
32 H 0.35 12.07 7.55 -89.70 -0.68 11.39 16
33 H 0.34 12.21 8.58 -89.69 -0.77 11.44 16
34 H 0.41 8.21 8.47 -92.71 -0.79 7.42 16
35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16
36 H 0.06 1.34 7.99 -2.39 -0.02 1.32 16
37 H 0.07 1.25 7.94 -2.39 -0.02 1.23 16
38 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16
39 H 0.09 1.18 7.21 -2.38 -0.02 1.16 16
40 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16
41 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16
42 H 0.08 1.06 8.05 -2.39 -0.02 1.04 16
Total: -1.00 -67.39 339.23 -0.19 -67.58
By element:
Atomic # 1 Polarization: 36.87 SS G_CDS: -1.11 Total: 35.77 kcal
Atomic # 6 Polarization: -28.89 SS G_CDS: 2.69 Total: -26.20 kcal
Atomic # 7 Polarization: -102.35 SS G_CDS: -3.78 Total: -106.12 kcal
Atomic # 8 Polarization: -22.46 SS G_CDS: -0.05 Total: -22.51 kcal
Atomic # 14 Polarization: 49.44 SS G_CDS: 2.05 Total: 51.49 kcal
Total: -67.39 -0.19 -67.58 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000698011403.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.957 kcal
(2) G-P(sol) polarization free energy of solvation -67.386 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.429 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.190 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.576 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.619 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds