Wall clock time and date at job start Mon Mar 30 2020 04:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00018 * 2 1 4 4 H 1.48503 * 109.46887 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46842 * 299.99722 * 3 2 1 6 6 H 1.48498 * 109.47422 * 60.00048 * 3 2 1 7 7 C 1.37881 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00343 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99500 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46944 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47135 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47233 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00385 * 179.97438 * 12 11 10 14 14 O 1.21282 * 119.99736 * 355.24220 * 13 12 11 15 15 C 1.50692 * 120.00192 * 175.24732 * 13 12 11 16 16 C 1.53144 * 109.42882 * 209.61197 * 15 13 12 17 17 C 1.53713 * 108.88027 * 66.06311 * 16 15 13 18 18 H 1.09001 * 112.12143 * 187.72780 * 17 16 15 19 19 C 1.54601 * 107.81208 * 311.73631 * 17 16 15 20 20 C 1.55890 * 104.07799 * 88.78167 * 19 17 16 21 21 C 1.54606 * 104.99379 * 359.97438 * 20 19 17 22 22 H 1.08993 * 112.21884 * 146.88101 * 21 20 19 23 23 C 1.53138 * 109.43038 * 329.82206 * 15 13 12 24 24 N 1.48715 * 107.24254 * 64.09385 * 17 16 15 25 25 H 0.96999 * 120.00098 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47584 * 59.99622 * 9 7 2 27 27 H 1.09001 * 109.47373 * 299.99601 * 9 7 2 28 28 H 1.08993 * 109.46983 * 299.99775 * 10 9 7 29 29 H 1.08993 * 109.46727 * 60.00039 * 10 9 7 30 30 H 1.09004 * 109.47036 * 300.00193 * 11 10 9 31 31 H 1.08997 * 109.47043 * 59.99921 * 11 10 9 32 32 H 0.97005 * 119.99626 * 359.97438 * 12 11 10 33 33 H 1.09001 * 109.43272 * 89.72380 * 15 13 12 34 34 H 1.08997 * 109.56893 * 185.87885 * 16 15 13 35 35 H 1.08996 * 109.57019 * 306.12480 * 16 15 13 36 36 H 1.09000 * 110.36594 * 207.40909 * 19 17 16 37 37 H 1.09001 * 110.36547 * 329.72167 * 19 17 16 38 38 H 1.08999 * 110.27857 * 241.08925 * 20 19 17 39 39 H 1.08996 * 110.30373 * 118.87465 * 20 19 17 40 40 H 1.08999 * 109.56692 * 53.75991 * 23 15 13 41 41 H 1.08996 * 109.56901 * 174.11134 * 23 15 13 42 42 H 1.00897 * 111.00199 * 168.33719 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 -0.0001 12 7 2.4322 -6.1006 -0.0007 13 6 1.9830 -7.3713 -0.0008 14 8 0.7941 -7.5941 0.0867 15 6 2.9580 -8.5152 -0.1096 16 6 2.2793 -9.6986 -0.8053 17 6 1.9692 -9.3095 -2.2597 18 1 1.3653 -10.0624 -2.7662 19 6 1.2829 -7.9243 -2.2425 20 6 2.4674 -6.9133 -2.3148 21 6 3.7393 -7.7906 -2.3671 22 1 4.5294 -7.3358 -2.9646 23 6 4.1775 -8.0696 -0.9217 24 7 3.2707 -9.0798 -2.9416 25 1 -0.4850 0.8400 0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8903 28 1 2.8719 -3.6044 -0.8894 29 1 2.8719 -3.6043 0.8905 30 1 0.8533 -5.0451 0.8897 31 1 0.8540 -5.0446 -0.8903 32 1 3.3860 -5.9233 -0.0011 33 1 3.2771 -8.8158 0.8883 34 1 2.9458 -10.5609 -0.7923 35 1 1.3532 -9.9452 -0.2861 36 1 0.6314 -7.8129 -3.1093 37 1 0.7153 -7.7935 -1.3212 38 1 2.4790 -6.2809 -1.4271 39 1 2.3898 -6.3036 -3.2149 40 1 4.5942 -7.1615 -0.4861 41 1 4.9294 -8.8587 -0.9138 42 1 3.1477 -9.0072 -3.9404 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699238476.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:18 Heat of formation + Delta-G solvation = 37.520700 kcal Electronic energy + Delta-G solvation = -21443.333276 eV Core-core repulsion = 18425.975278 eV Total energy + Delta-G solvation = -3017.357998 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.53101 -38.23094 -36.11292 -33.76052 -32.92824 -31.56984 -30.73795 -29.47246 -26.93946 -24.49738 -24.21472 -22.88966 -20.95937 -20.44923 -20.10042 -18.80797 -17.78469 -17.34047 -16.49063 -16.16917 -15.48164 -14.61943 -14.47591 -14.08192 -13.75042 -13.57873 -13.28647 -12.98343 -12.84100 -12.39160 -12.23730 -12.10657 -12.00676 -11.86020 -11.14356 -10.93745 -10.86590 -10.78044 -10.63708 -10.58925 -10.33071 -10.02191 -9.90221 -9.71397 -9.40876 -9.15051 -8.71885 -8.41455 -7.89370 -6.05812 -4.09042 2.35543 3.20383 3.27426 3.35317 3.38589 4.15437 4.41100 4.50599 4.55594 4.62841 5.07915 5.08299 5.14550 5.15858 5.30315 5.30652 5.40368 5.53662 5.59766 5.66653 5.68177 5.82512 5.91040 5.97592 6.04759 6.05941 6.08823 6.21009 6.32667 6.47264 6.53245 6.67871 6.71283 6.90801 6.99644 7.27638 7.43291 7.58651 7.70051 7.92454 8.12204 8.33380 8.97768 9.55604 11.05462 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.037015 B = 0.003957 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.264439 B = 7074.039332 C = 7236.561192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.122 4.122 11 C 0.105 3.895 12 N -0.716 5.716 13 C 0.537 3.463 14 O -0.516 6.516 15 C -0.107 4.107 16 C -0.090 4.090 17 C 0.065 3.935 18 H 0.084 0.916 19 C -0.249 4.249 20 C -0.274 4.274 21 C 0.064 3.936 22 H 0.088 0.912 23 C -0.104 4.104 24 N -0.660 5.660 25 H 0.261 0.739 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.404 0.596 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.043 0.957 37 H 0.169 0.831 38 H 0.172 0.828 39 H 0.050 0.950 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.843 -18.119 -1.951 19.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.160 4.160 11 C -0.017 4.017 12 N -0.369 5.369 13 C 0.330 3.670 14 O -0.397 6.397 15 C -0.128 4.128 16 C -0.128 4.128 17 C -0.045 4.045 18 H 0.102 0.898 19 C -0.286 4.286 20 C -0.314 4.314 21 C -0.046 4.046 22 H 0.106 0.894 23 C -0.143 4.143 24 N -0.287 5.287 25 H 0.070 0.930 26 H 0.037 0.963 27 H 0.038 0.962 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.243 0.757 33 H 0.121 0.879 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.062 0.938 37 H 0.184 0.816 38 H 0.186 0.814 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.310 -18.630 -1.470 20.066 hybrid contribution 0.279 1.710 -0.991 1.996 sum 7.589 -16.919 -2.460 18.706 Atomic orbital electron populations 1.69970 1.06071 1.26628 1.50556 1.25025 0.94843 0.99322 0.95221 0.86534 0.80060 0.83756 0.77630 1.19739 1.20997 1.20973 1.21226 0.93029 0.90889 1.50951 0.92568 1.19031 0.93817 0.90830 0.97702 1.21913 0.99838 0.93190 1.01062 1.21833 0.92095 0.85091 1.02670 1.46707 1.11659 1.06591 1.71973 1.20224 0.89527 0.84155 0.73106 1.90105 1.17680 1.84923 1.47036 1.21414 0.95395 0.94676 1.01348 1.21525 1.00808 0.95941 0.94575 1.22783 0.89702 0.97250 0.94724 0.89801 1.25859 0.99209 0.94300 1.09261 1.26056 0.93883 1.01299 1.10129 1.22791 0.97325 0.89369 0.95124 0.89374 1.21719 0.96483 1.01521 0.94529 1.63836 1.24836 1.31286 1.08695 0.92952 0.96254 0.96222 0.92561 0.92550 0.91238 0.91130 0.75743 0.87900 0.90597 0.90420 0.93827 0.81608 0.81360 0.93077 0.91403 0.90032 0.85557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.26 9.11 -34.44 -0.31 -14.57 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.24 5.27 -26.73 -0.14 -2.38 16 11 C 0.10 1.69 5.10 -4.04 -0.02 1.67 16 12 N -0.72 -9.10 3.02 -60.30 -0.18 -9.29 16 13 C 0.54 7.06 4.17 -10.99 -0.05 7.02 16 14 O -0.52 -8.41 12.85 5.56 0.07 -8.34 16 15 C -0.11 -1.10 3.13 -91.63 -0.29 -1.39 16 16 C -0.09 -0.97 5.23 -26.29 -0.14 -1.11 16 17 C 0.07 0.77 4.49 -65.49 -0.29 0.48 16 18 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 19 C -0.25 -3.52 5.97 -24.35 -0.15 -3.66 16 20 C -0.27 -3.63 5.89 -24.34 -0.14 -3.78 16 21 C 0.06 0.70 4.53 -65.55 -0.30 0.41 16 22 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 23 C -0.10 -0.97 5.19 -26.35 -0.14 -1.10 16 24 N -0.66 -7.31 7.11 -94.74 -0.67 -7.98 16 25 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.07 1.22 7.98 -51.93 -0.41 0.81 16 32 H 0.40 4.20 6.28 -40.82 -0.26 3.95 16 33 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.87 7.63 -51.93 -0.40 0.47 16 36 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.17 2.67 2.86 -59.54 -0.17 2.50 16 38 H 0.17 2.26 1.61 -117.96 -0.19 2.07 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.52 6.39 -51.93 -0.33 0.19 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.33 3.47 8.93 -39.29 -0.35 3.12 16 LS Contribution 311.06 15.07 4.69 4.69 Total: -1.00 -30.34 311.06 -9.30 -39.64 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -6.72 Total: 7.28 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -2.20 Total: -16.47 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: -0.12 Total: -42.95 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.07 Total: -8.34 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.34 -9.30 -39.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699238476.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.162 kcal (2) G-P(sol) polarization free energy of solvation -30.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds