Wall clock time and date at job start Mon Mar 30 2020 04:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00018 * 2 1 4 4 H 1.48503 * 109.46887 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46842 * 299.99722 * 3 2 1 6 6 H 1.48498 * 109.47422 * 60.00048 * 3 2 1 7 7 C 1.37881 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00343 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99500 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46944 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47135 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47233 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00385 * 179.97438 * 12 11 10 14 14 O 1.21282 * 119.99736 * 355.24220 * 13 12 11 15 15 C 1.50692 * 120.00192 * 175.24732 * 13 12 11 16 16 C 1.53144 * 109.42882 * 209.61197 * 15 13 12 17 17 C 1.53713 * 108.88027 * 66.06311 * 16 15 13 18 18 H 1.09001 * 112.12143 * 187.72780 * 17 16 15 19 19 C 1.54601 * 107.81208 * 311.73631 * 17 16 15 20 20 C 1.55890 * 104.07799 * 88.78167 * 19 17 16 21 21 C 1.54606 * 104.99379 * 359.97438 * 20 19 17 22 22 H 1.08993 * 112.21884 * 146.88101 * 21 20 19 23 23 C 1.53138 * 109.43038 * 329.82206 * 15 13 12 24 24 N 1.48715 * 107.24254 * 64.09385 * 17 16 15 25 25 H 0.96999 * 120.00098 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47584 * 59.99622 * 9 7 2 27 27 H 1.09001 * 109.47373 * 299.99601 * 9 7 2 28 28 H 1.08993 * 109.46983 * 299.99775 * 10 9 7 29 29 H 1.08993 * 109.46727 * 60.00039 * 10 9 7 30 30 H 1.09004 * 109.47036 * 300.00193 * 11 10 9 31 31 H 1.08997 * 109.47043 * 59.99921 * 11 10 9 32 32 H 0.97005 * 119.99626 * 359.97438 * 12 11 10 33 33 H 1.09001 * 109.43272 * 89.72380 * 15 13 12 34 34 H 1.08997 * 109.56893 * 185.87885 * 16 15 13 35 35 H 1.08996 * 109.57019 * 306.12480 * 16 15 13 36 36 H 1.09000 * 110.36594 * 207.40909 * 19 17 16 37 37 H 1.09001 * 110.36547 * 329.72167 * 19 17 16 38 38 H 1.08999 * 110.27857 * 241.08925 * 20 19 17 39 39 H 1.08996 * 110.30373 * 118.87465 * 20 19 17 40 40 H 1.08999 * 109.56692 * 53.75991 * 23 15 13 41 41 H 1.08996 * 109.56901 * 174.11134 * 23 15 13 42 42 H 1.00897 * 111.00199 * 168.33719 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 -0.0001 12 7 2.4322 -6.1006 -0.0007 13 6 1.9830 -7.3713 -0.0008 14 8 0.7941 -7.5941 0.0867 15 6 2.9580 -8.5152 -0.1096 16 6 2.2793 -9.6986 -0.8053 17 6 1.9692 -9.3095 -2.2597 18 1 1.3653 -10.0624 -2.7662 19 6 1.2829 -7.9243 -2.2425 20 6 2.4674 -6.9133 -2.3148 21 6 3.7393 -7.7906 -2.3671 22 1 4.5294 -7.3358 -2.9646 23 6 4.1775 -8.0696 -0.9217 24 7 3.2707 -9.0798 -2.9416 25 1 -0.4850 0.8400 0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8903 28 1 2.8719 -3.6044 -0.8894 29 1 2.8719 -3.6043 0.8905 30 1 0.8533 -5.0451 0.8897 31 1 0.8540 -5.0446 -0.8903 32 1 3.3860 -5.9233 -0.0011 33 1 3.2771 -8.8158 0.8883 34 1 2.9458 -10.5609 -0.7923 35 1 1.3532 -9.9452 -0.2861 36 1 0.6314 -7.8129 -3.1093 37 1 0.7153 -7.7935 -1.3212 38 1 2.4790 -6.2809 -1.4271 39 1 2.3898 -6.3036 -3.2149 40 1 4.5942 -7.1615 -0.4861 41 1 4.9294 -8.8587 -0.9138 42 1 3.1477 -9.0072 -3.9404 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699238476.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:18 Heat of formation + Delta-G solvation = 16.737637 kcal Electronic energy + Delta-G solvation = -21444.234497 eV Core-core repulsion = 18425.975278 eV Total energy + Delta-G solvation = -3018.259219 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.53987 -39.25808 -37.42891 -35.51180 -34.02421 -33.09049 -31.79050 -30.52125 -28.64214 -25.78935 -25.11789 -24.37265 -22.37131 -21.72094 -21.10000 -19.84750 -18.84436 -18.55221 -18.18628 -17.29738 -16.74044 -16.42557 -15.98788 -15.09956 -14.79607 -14.58415 -14.26969 -14.18925 -14.09928 -13.85961 -13.62738 -13.37832 -13.16473 -12.91519 -12.83551 -12.54160 -12.35494 -12.26442 -11.97433 -11.58197 -11.54790 -11.44283 -11.26933 -11.21710 -10.88313 -10.64220 -10.55904 -9.64651 -9.02577 -8.19586 -6.30673 1.31716 1.41755 1.42299 1.55048 2.11261 2.42547 3.14801 3.26827 3.64359 3.71101 3.73684 4.08993 4.13651 4.18351 4.21798 4.26068 4.33816 4.45450 4.51912 4.54479 4.67250 4.81797 4.91995 4.93152 4.95216 5.08535 5.14605 5.17208 5.19019 5.24617 5.27174 5.30686 5.49445 5.52811 5.68916 5.71556 5.84805 5.90507 6.22337 6.39516 6.41371 6.87419 7.09762 7.39218 8.92655 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.037015 B = 0.003957 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.264439 B = 7074.039332 C = 7236.561192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.965 3.035 4 H -0.257 1.257 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.104 4.104 11 C 0.121 3.879 12 N -0.705 5.705 13 C 0.534 3.466 14 O -0.551 6.551 15 C -0.102 4.102 16 C -0.089 4.089 17 C 0.066 3.934 18 H 0.086 0.914 19 C -0.258 4.258 20 C -0.276 4.276 21 C 0.064 3.936 22 H 0.100 0.900 23 C -0.101 4.101 24 N -0.653 5.653 25 H 0.262 0.738 26 H -0.010 1.010 27 H -0.007 1.007 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.419 0.581 33 H 0.133 0.867 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.022 0.978 37 H 0.155 0.845 38 H 0.172 0.828 39 H 0.030 0.970 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.953 -18.878 -1.473 21.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.181 1.181 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.577 4.577 8 H 0.086 0.914 9 C -0.015 4.015 10 C -0.141 4.141 11 C -0.002 4.002 12 N -0.359 5.359 13 C 0.329 3.671 14 O -0.434 6.434 15 C -0.122 4.122 16 C -0.127 4.127 17 C -0.044 4.044 18 H 0.104 0.896 19 C -0.295 4.295 20 C -0.316 4.316 21 C -0.046 4.046 22 H 0.118 0.882 23 C -0.139 4.139 24 N -0.279 5.279 25 H 0.071 0.929 26 H 0.008 0.992 27 H 0.012 0.988 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.260 0.740 33 H 0.150 0.850 34 H 0.114 0.886 35 H 0.087 0.913 36 H 0.041 0.959 37 H 0.170 0.830 38 H 0.186 0.814 39 H 0.049 0.951 40 H 0.107 0.893 41 H 0.119 0.881 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.465 -19.408 -0.994 22.072 hybrid contribution -0.771 1.920 -1.175 2.380 sum 9.694 -17.487 -2.169 20.112 Atomic orbital electron populations 1.70114 1.07948 1.27671 1.51870 1.26000 0.95693 1.03495 0.94848 0.85396 0.79303 0.78783 0.77539 1.18090 1.20796 1.20613 1.21718 0.93789 0.91979 1.50169 0.91440 1.18946 0.94469 0.93019 0.95046 1.21617 0.98459 0.91704 1.02358 1.21354 0.92136 0.85454 1.01267 1.46459 1.11832 1.05720 1.71906 1.20895 0.89642 0.84629 0.71901 1.90116 1.19534 1.85344 1.48454 1.21504 0.94754 0.92799 1.03190 1.21535 1.01008 0.96814 0.93354 1.22797 0.89871 0.95756 0.96021 0.89586 1.25856 0.99541 0.96628 1.07476 1.26074 0.95118 1.01397 1.08969 1.22901 0.96236 0.88624 0.96848 0.88244 1.21769 0.96132 1.03200 0.92754 1.63882 1.23981 1.31207 1.08868 0.92883 0.99166 0.98824 0.91355 0.90924 0.92476 0.92993 0.73955 0.84953 0.88582 0.91329 0.95931 0.82990 0.81416 0.95124 0.89328 0.88139 0.85421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.62 13.29 21.45 0.28 -56.34 16 2 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 3 Si 0.97 43.24 29.54 68.60 2.03 45.27 16 4 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.54 -29.40 9.11 25.60 0.23 -29.17 16 8 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.02 1.16 4.97 29.85 0.15 1.31 16 10 C -0.10 -3.74 5.27 30.60 0.16 -3.58 16 11 C 0.12 3.93 5.10 86.38 0.44 4.37 16 12 N -0.70 -16.91 3.02 -463.08 -1.40 -18.31 16 13 C 0.53 13.39 4.17 87.66 0.37 13.76 16 14 O -0.55 -18.12 12.85 -3.03 -0.04 -18.16 16 15 C -0.10 -1.78 3.13 -11.45 -0.04 -1.81 16 16 C -0.09 -1.70 5.23 30.88 0.16 -1.54 16 17 C 0.07 1.48 4.49 45.35 0.20 1.69 16 18 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 19 C -0.26 -7.41 5.97 32.14 0.19 -7.22 16 20 C -0.28 -7.17 5.89 32.14 0.19 -6.99 16 21 C 0.06 1.24 4.53 45.31 0.21 1.45 16 22 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 23 C -0.10 -1.46 5.19 30.84 0.16 -1.30 16 24 N -0.65 -13.07 7.11 -453.65 -3.22 -16.30 16 25 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 26 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 27 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 28 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 31 H 0.05 1.88 7.98 -2.39 -0.02 1.86 16 32 H 0.42 7.48 6.28 -92.70 -0.58 6.90 16 33 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 1.45 7.63 -2.39 -0.02 1.43 16 36 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.16 5.04 2.86 -122.90 -0.35 4.69 16 38 H 0.17 4.37 1.61 -132.75 -0.21 4.15 16 39 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.09 0.94 6.39 -2.39 -0.02 0.93 16 41 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.33 6.48 8.93 -89.70 -0.80 5.68 16 Total: -1.00 -67.32 311.06 -0.37 -67.69 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: -0.91 Total: 24.87 kcal Atomic # 6 Polarization: -31.62 SS G_CDS: 2.89 Total: -28.73 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -4.34 Total: -90.94 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.04 Total: -18.16 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -67.32 -0.37 -67.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699238476.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.429 kcal (2) G-P(sol) polarization free energy of solvation -67.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds