Wall clock time and date at job start Mon Mar 30 2020 05:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00268 * 2 1 4 4 H 1.48495 * 109.47359 * 240.00254 * 3 2 1 5 5 H 1.48506 * 109.46744 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47489 * 119.99724 * 3 2 1 7 7 C 1.37875 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00064 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00362 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47444 * 180.02562 * 9 7 2 11 11 C 1.34771 * 120.00304 * 90.00060 * 10 9 7 12 12 O 1.21288 * 119.99945 * 185.94714 * 11 10 9 13 13 C 1.50696 * 120.00083 * 5.93942 * 11 10 9 14 14 C 1.53007 * 109.47123 * 175.02720 * 13 11 10 15 15 N 1.46896 * 109.47147 * 179.97438 * 14 13 11 16 16 C 1.48557 * 111.00198 * 169.99493 * 15 14 13 17 17 C 1.54377 * 104.70317 * 200.90094 * 16 15 14 18 18 C 1.54574 * 104.91111 * 23.88016 * 17 16 15 19 19 C 1.48567 * 110.99918 * 54.57651 * 15 14 13 20 20 C 1.46503 * 119.99478 * 269.99700 * 10 9 7 21 21 C 1.53004 * 117.49880 * 196.45537 * 20 10 9 22 22 C 1.53000 * 60.00020 * 252.50886 * 21 20 10 23 23 H 0.97003 * 120.00017 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47233 * 59.99208 * 9 7 2 25 25 H 1.09003 * 109.46419 * 299.99690 * 9 7 2 26 26 H 1.08997 * 109.47030 * 55.02373 * 13 11 10 27 27 H 1.09001 * 109.47126 * 295.02470 * 13 11 10 28 28 H 1.08997 * 109.47451 * 59.99910 * 14 13 11 29 29 H 1.09001 * 109.46915 * 299.99879 * 14 13 11 30 30 H 1.08999 * 110.41145 * 319.73970 * 16 15 14 31 31 H 1.08999 * 110.40880 * 82.06306 * 16 15 14 32 32 H 1.08996 * 110.32709 * 142.80969 * 17 16 15 33 33 H 1.09007 * 110.32412 * 265.01960 * 17 16 15 34 34 H 1.08992 * 110.30091 * 241.08204 * 18 17 16 35 35 H 1.09003 * 110.40070 * 118.93431 * 18 17 16 36 36 H 1.08995 * 110.41509 * 277.81821 * 19 15 14 37 37 H 1.09001 * 110.40946 * 40.14965 * 19 15 14 38 38 H 1.09002 * 115.55277 * 342.15624 * 20 10 9 39 39 H 1.09005 * 117.49275 * 359.97438 * 21 20 10 40 40 H 1.08997 * 117.50458 * 145.02032 * 21 20 10 41 41 H 1.09000 * 117.49975 * 252.51042 * 22 21 20 42 42 H 1.09005 * 117.51962 * 107.47320 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 2.6400 -4.1244 1.1695 12 8 3.5077 -4.9718 1.1733 13 6 2.0507 -3.6435 2.4704 14 6 2.6266 -4.4650 3.6257 15 7 2.0527 -3.9959 4.8939 16 6 2.3985 -4.9162 6.0075 17 6 1.3394 -4.6318 7.0941 18 6 0.1330 -4.0416 6.3289 19 6 0.5679 -4.0205 4.8477 20 6 2.6799 -4.1699 -1.2664 21 6 3.3497 -5.5450 -1.2264 22 6 4.1927 -4.2899 -1.4610 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8904 26 1 0.9676 -3.7624 2.4445 27 1 2.2974 -2.5916 2.6142 28 1 3.7098 -4.3461 3.6515 29 1 2.3799 -5.5169 3.4818 30 1 2.3354 -5.9531 5.6774 31 1 3.3977 -4.6982 6.3844 32 1 1.0554 -5.5561 7.5972 33 1 1.7214 -3.9092 7.8153 34 1 -0.0771 -3.0302 6.6762 35 1 -0.7448 -4.6751 6.4566 36 1 0.1880 -3.1268 4.3527 37 1 0.2184 -4.9162 4.3342 38 1 2.0774 -3.9286 -2.1422 39 1 3.4359 -6.0347 -0.2564 40 1 3.1879 -6.2086 -2.0758 41 1 4.5855 -4.1278 -2.4647 42 1 4.8332 -3.9538 -0.6455 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700854566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:51 Heat of formation + Delta-G solvation = -1.242448 kcal Electronic energy + Delta-G solvation = -20900.077982 eV Core-core repulsion = 17881.039088 eV Total energy + Delta-G solvation = -3019.038894 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.73268 -38.63283 -35.86034 -34.24585 -32.93413 -32.12784 -29.21053 -28.45670 -27.04363 -24.01355 -22.84895 -21.83715 -21.78087 -20.86137 -20.20659 -18.17055 -16.71842 -16.25940 -15.99226 -15.75792 -15.07111 -14.90791 -14.45634 -14.14176 -13.81548 -13.47820 -13.03788 -12.60555 -12.44448 -12.22793 -12.19642 -11.66107 -11.58218 -11.37710 -11.16685 -11.09787 -10.93999 -10.86050 -10.69335 -10.60571 -10.49124 -10.42291 -10.22502 -9.69811 -9.58264 -8.73415 -8.52327 -8.32825 -7.51340 -6.17583 -4.24771 3.26622 3.28124 3.30831 3.36454 3.74120 4.21637 4.35752 4.58422 4.69103 4.76974 5.00034 5.15322 5.29158 5.32379 5.38825 5.50104 5.52031 5.56182 5.68196 5.71617 5.76006 5.78159 5.83035 5.98790 6.05523 6.12208 6.16133 6.21024 6.23311 6.38118 6.47616 6.59546 6.79831 6.91738 6.98494 7.14864 7.18721 7.61354 7.77639 8.05289 8.31730 8.79540 9.00248 9.43086 10.88968 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.013034 B = 0.006518 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.775242 B = 4294.944482 C = 5867.369742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.066 3.934 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.061 0.939 9 C 0.239 3.761 10 N -0.568 5.568 11 C 0.520 3.480 12 O -0.570 6.570 13 C -0.134 4.134 14 C 0.065 3.935 15 N -0.511 5.511 16 C 0.031 3.969 17 C -0.123 4.123 18 C -0.125 4.125 19 C 0.027 3.973 20 C 0.088 3.912 21 C -0.203 4.203 22 C -0.187 4.187 23 H 0.266 0.734 24 H 0.035 0.965 25 H 0.041 0.959 26 H 0.087 0.913 27 H 0.111 0.889 28 H 0.082 0.918 29 H 0.037 0.963 30 H 0.042 0.958 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.042 0.958 38 H 0.122 0.878 39 H 0.133 0.867 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.540 -8.603 7.814 11.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.137 4.137 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.574 4.574 8 H 0.079 0.921 9 C 0.120 3.880 10 N -0.296 5.296 11 C 0.309 3.691 12 O -0.453 6.453 13 C -0.173 4.173 14 C -0.063 4.063 15 N -0.235 5.235 16 C -0.097 4.097 17 C -0.162 4.162 18 C -0.163 4.163 19 C -0.101 4.101 20 C -0.017 4.017 21 C -0.241 4.241 22 C -0.226 4.226 23 H 0.075 0.925 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.106 0.894 27 H 0.129 0.871 28 H 0.100 0.900 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.061 0.939 38 H 0.139 0.861 39 H 0.151 0.849 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.988 -8.334 7.881 11.513 hybrid contribution 0.077 0.373 -0.416 0.564 sum 1.064 -7.961 7.465 10.965 Atomic orbital electron populations 1.69906 1.05992 1.27429 1.49784 1.24920 0.94850 0.99257 0.94680 0.86563 0.79573 0.82525 0.78887 1.20152 1.21142 1.20003 1.21441 0.93623 0.90361 1.52012 0.92109 1.19467 0.87367 0.82431 0.98738 1.47669 1.44771 1.33988 1.03173 1.20454 0.81958 0.81035 0.85652 1.90436 1.32633 1.34673 1.87543 1.21625 1.01282 1.03152 0.91282 1.21988 1.00364 0.96356 0.87627 1.65433 1.07431 1.46519 1.04095 1.23101 0.99579 0.94769 0.92210 1.22337 0.95484 1.00653 0.97687 1.22346 0.97482 1.01533 0.94917 1.23176 0.88792 1.01565 0.96556 1.21499 0.94009 0.97814 0.88402 1.23785 1.04156 0.91420 1.04703 1.23097 0.95071 1.02667 1.01773 0.92468 0.94673 0.94095 0.89447 0.87116 0.89982 0.94488 0.94018 0.90297 0.91675 0.91148 0.91000 0.91626 0.89402 0.93925 0.86068 0.84908 0.90297 0.89574 0.88859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.52 13.29 55.43 0.74 -23.78 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.54 -14.04 9.39 -34.44 -0.32 -14.36 16 8 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 9 C 0.24 5.68 5.10 -5.20 -0.03 5.65 16 10 N -0.57 -12.11 2.82 -167.47 -0.47 -12.59 16 11 C 0.52 10.71 7.46 -10.99 -0.08 10.63 16 12 O -0.57 -12.20 11.73 5.55 0.07 -12.14 16 13 C -0.13 -2.44 3.95 -27.88 -0.11 -2.55 16 14 C 0.06 1.05 4.36 -3.82 -0.02 1.04 16 15 N -0.51 -7.51 5.49 -229.97 -1.26 -8.77 16 16 C 0.03 0.38 6.48 -2.18 -0.01 0.37 16 17 C -0.12 -1.27 7.02 -25.18 -0.18 -1.45 16 18 C -0.12 -1.37 7.01 -25.18 -0.18 -1.55 16 19 C 0.03 0.36 5.11 -2.17 -0.01 0.35 16 20 C 0.09 1.71 6.62 -67.93 -0.45 1.26 16 21 C -0.20 -3.56 9.63 -26.73 -0.26 -3.82 16 22 C -0.19 -3.41 9.87 -26.73 -0.26 -3.68 16 23 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 24 H 0.04 0.87 8.04 -51.93 -0.42 0.46 16 25 H 0.04 0.98 6.31 -51.93 -0.33 0.66 16 26 H 0.09 1.54 6.05 -51.93 -0.31 1.22 16 27 H 0.11 2.23 8.14 -51.93 -0.42 1.80 16 28 H 0.08 1.40 8.05 -51.93 -0.42 0.98 16 29 H 0.04 0.60 7.88 -51.93 -0.41 0.19 16 30 H 0.04 0.49 7.82 -51.93 -0.41 0.09 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.09 1.27 7.67 -51.93 -0.40 0.87 16 37 H 0.04 0.56 7.99 -51.93 -0.42 0.15 16 38 H 0.12 2.19 8.09 -51.93 -0.42 1.77 16 39 H 0.13 2.59 5.22 -52.10 -0.27 2.32 16 40 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.09 1.89 7.59 -51.93 -0.39 1.50 16 LS Contribution 333.61 15.07 5.03 5.03 Total: -1.00 -27.92 333.61 -10.05 -37.97 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -7.12 Total: 4.96 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -2.01 Total: -6.46 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: -1.00 Total: -45.14 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.07 Total: -12.14 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.92 -10.05 -37.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700854566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.724 kcal (2) G-P(sol) polarization free energy of solvation -27.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds