Wall clock time and date at job start Mon Mar 30 2020 05:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00268 * 2 1 4 4 H 1.48495 * 109.47359 * 240.00254 * 3 2 1 5 5 H 1.48506 * 109.46744 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47489 * 119.99724 * 3 2 1 7 7 C 1.37875 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00064 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00362 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47444 * 180.02562 * 9 7 2 11 11 C 1.34771 * 120.00304 * 90.00060 * 10 9 7 12 12 O 1.21288 * 119.99945 * 185.94714 * 11 10 9 13 13 C 1.50696 * 120.00083 * 5.93942 * 11 10 9 14 14 C 1.53007 * 109.47123 * 175.02720 * 13 11 10 15 15 N 1.46896 * 109.47147 * 179.97438 * 14 13 11 16 16 C 1.48557 * 111.00198 * 169.99493 * 15 14 13 17 17 C 1.54377 * 104.70317 * 200.90094 * 16 15 14 18 18 C 1.54574 * 104.91111 * 23.88016 * 17 16 15 19 19 C 1.48567 * 110.99918 * 54.57651 * 15 14 13 20 20 C 1.46503 * 119.99478 * 269.99700 * 10 9 7 21 21 C 1.53004 * 117.49880 * 196.45537 * 20 10 9 22 22 C 1.53000 * 60.00020 * 252.50886 * 21 20 10 23 23 H 0.97003 * 120.00017 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47233 * 59.99208 * 9 7 2 25 25 H 1.09003 * 109.46419 * 299.99690 * 9 7 2 26 26 H 1.08997 * 109.47030 * 55.02373 * 13 11 10 27 27 H 1.09001 * 109.47126 * 295.02470 * 13 11 10 28 28 H 1.08997 * 109.47451 * 59.99910 * 14 13 11 29 29 H 1.09001 * 109.46915 * 299.99879 * 14 13 11 30 30 H 1.08999 * 110.41145 * 319.73970 * 16 15 14 31 31 H 1.08999 * 110.40880 * 82.06306 * 16 15 14 32 32 H 1.08996 * 110.32709 * 142.80969 * 17 16 15 33 33 H 1.09007 * 110.32412 * 265.01960 * 17 16 15 34 34 H 1.08992 * 110.30091 * 241.08204 * 18 17 16 35 35 H 1.09003 * 110.40070 * 118.93431 * 18 17 16 36 36 H 1.08995 * 110.41509 * 277.81821 * 19 15 14 37 37 H 1.09001 * 110.40946 * 40.14965 * 19 15 14 38 38 H 1.09002 * 115.55277 * 342.15624 * 20 10 9 39 39 H 1.09005 * 117.49275 * 359.97438 * 21 20 10 40 40 H 1.08997 * 117.50458 * 145.02032 * 21 20 10 41 41 H 1.09000 * 117.49975 * 252.51042 * 22 21 20 42 42 H 1.09005 * 117.51962 * 107.47320 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 2.6400 -4.1244 1.1695 12 8 3.5077 -4.9718 1.1733 13 6 2.0507 -3.6435 2.4704 14 6 2.6266 -4.4650 3.6257 15 7 2.0527 -3.9959 4.8939 16 6 2.3985 -4.9162 6.0075 17 6 1.3394 -4.6318 7.0941 18 6 0.1330 -4.0416 6.3289 19 6 0.5679 -4.0205 4.8477 20 6 2.6799 -4.1699 -1.2664 21 6 3.3497 -5.5450 -1.2264 22 6 4.1927 -4.2899 -1.4610 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8904 26 1 0.9676 -3.7624 2.4445 27 1 2.2974 -2.5916 2.6142 28 1 3.7098 -4.3461 3.6515 29 1 2.3799 -5.5169 3.4818 30 1 2.3354 -5.9531 5.6774 31 1 3.3977 -4.6982 6.3844 32 1 1.0554 -5.5561 7.5972 33 1 1.7214 -3.9092 7.8153 34 1 -0.0771 -3.0302 6.6762 35 1 -0.7448 -4.6751 6.4566 36 1 0.1880 -3.1268 4.3527 37 1 0.2184 -4.9162 4.3342 38 1 2.0774 -3.9286 -2.1422 39 1 3.4359 -6.0347 -0.2564 40 1 3.1879 -6.2086 -2.0758 41 1 4.5855 -4.1278 -2.4647 42 1 4.8332 -3.9538 -0.6455 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700854566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:51 Heat of formation + Delta-G solvation = -17.212074 kcal Electronic energy + Delta-G solvation = -20900.770477 eV Core-core repulsion = 17881.039088 eV Total energy + Delta-G solvation = -3019.731389 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.32363 -39.75211 -37.41535 -36.02337 -34.35571 -33.86730 -30.39458 -29.54920 -28.98538 -25.40639 -24.75322 -23.24571 -23.19243 -21.82997 -21.39298 -19.77320 -18.68915 -17.87667 -17.26614 -17.08867 -16.51044 -16.38259 -16.23642 -15.37545 -15.20909 -14.78651 -14.46824 -14.29894 -13.94394 -13.72569 -13.46987 -13.38692 -12.96731 -12.81389 -12.67054 -12.40900 -12.35087 -12.27687 -12.13790 -12.03324 -11.99767 -11.87327 -11.45865 -11.33826 -11.20839 -10.63609 -10.30271 -9.47361 -9.21884 -8.20950 -6.35673 1.41527 1.42348 1.49685 1.64787 2.17247 2.41454 3.01146 3.08886 3.12439 3.67327 3.76698 3.80082 4.01816 4.04592 4.11466 4.17396 4.23269 4.27898 4.36208 4.51502 4.66452 4.71072 4.73406 4.82936 4.85961 4.91656 4.96734 4.99597 5.01618 5.10058 5.10529 5.17956 5.23639 5.31230 5.41769 5.66719 5.91470 5.95127 6.01060 6.04290 6.53127 6.79040 7.27887 7.38971 8.83756 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.013034 B = 0.006518 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.775242 B = 4294.944482 C = 5867.369742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.025 3.975 3 Si 0.954 3.046 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.047 0.953 9 C 0.255 3.745 10 N -0.574 5.574 11 C 0.513 3.487 12 O -0.578 6.578 13 C -0.123 4.123 14 C 0.079 3.921 15 N -0.527 5.527 16 C 0.027 3.973 17 C -0.117 4.117 18 C -0.121 4.121 19 C 0.023 3.977 20 C 0.061 3.939 21 C -0.182 4.182 22 C -0.185 4.185 23 H 0.269 0.731 24 H 0.023 0.977 25 H 0.034 0.966 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.037 0.963 30 H 0.045 0.955 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.043 0.957 38 H 0.132 0.868 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.690 -9.046 8.266 12.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.176 4.176 3 Si 0.779 3.221 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.199 1.199 7 C -0.584 4.584 8 H 0.066 0.934 9 C 0.134 3.866 10 N -0.302 5.302 11 C 0.303 3.697 12 O -0.461 6.461 13 C -0.163 4.163 14 C -0.050 4.050 15 N -0.251 5.251 16 C -0.100 4.100 17 C -0.155 4.155 18 C -0.159 4.159 19 C -0.105 4.105 20 C -0.044 4.044 21 C -0.220 4.220 22 C -0.223 4.223 23 H 0.078 0.922 24 H 0.041 0.959 25 H 0.052 0.948 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.150 0.850 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.147 -8.792 8.337 12.170 hybrid contribution 0.046 0.472 -0.569 0.741 sum 1.192 -8.320 7.768 11.445 Atomic orbital electron populations 1.69983 1.07057 1.28293 1.50341 1.25588 0.95584 1.02103 0.94300 0.85673 0.78516 0.79123 0.78785 1.19802 1.20328 1.19941 1.21588 0.93074 0.91714 1.52069 0.93447 1.19112 0.87327 0.82500 0.97656 1.47641 1.44584 1.33580 1.04369 1.20801 0.81873 0.80882 0.86121 1.90438 1.32898 1.35007 1.87771 1.21526 1.01504 1.02060 0.91205 1.21772 0.99543 0.95817 0.87846 1.65416 1.08264 1.47578 1.03840 1.23215 1.00588 0.94406 0.91807 1.22343 0.94291 1.01838 0.97035 1.22352 0.98504 1.02156 0.92910 1.23203 0.88068 1.00751 0.98483 1.21820 0.94991 0.99615 0.87977 1.23726 1.02351 0.90860 1.05019 1.23105 0.93859 1.03035 1.02334 0.92221 0.95921 0.94789 0.89037 0.89221 0.91124 0.94450 0.93643 0.89885 0.89498 0.90531 0.90998 0.89802 0.91137 0.93854 0.85010 0.86825 0.86932 0.86848 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.57 13.29 21.45 0.28 -50.28 16 2 C 0.02 1.32 5.46 84.65 0.46 1.78 16 3 Si 0.95 42.52 29.54 68.60 2.03 44.54 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.55 -29.00 9.39 25.60 0.24 -28.76 16 8 H 0.05 2.60 7.81 -2.91 -0.02 2.58 16 9 C 0.25 12.32 5.10 85.63 0.44 12.76 16 10 N -0.57 -24.80 2.82 -802.13 -2.26 -27.07 16 11 C 0.51 21.54 7.46 87.66 0.65 22.19 16 12 O -0.58 -24.96 11.73 -3.06 -0.04 -25.00 16 13 C -0.12 -4.63 3.95 29.85 0.12 -4.51 16 14 C 0.08 2.59 4.36 86.31 0.38 2.97 16 15 N -0.53 -15.34 5.49 -881.48 -4.84 -20.18 16 16 C 0.03 0.63 6.48 86.45 0.56 1.19 16 17 C -0.12 -2.13 7.02 31.60 0.22 -1.91 16 18 C -0.12 -2.45 7.01 31.60 0.22 -2.23 16 19 C 0.02 0.60 5.11 86.45 0.44 1.04 16 20 C 0.06 2.31 6.62 44.99 0.30 2.61 16 21 C -0.18 -6.10 9.63 30.60 0.29 -5.81 16 22 C -0.18 -6.54 9.87 30.60 0.30 -6.24 16 23 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 24 H 0.02 1.15 8.04 -2.38 -0.02 1.13 16 25 H 0.03 1.68 6.31 -2.39 -0.02 1.67 16 26 H 0.09 3.33 6.05 -2.39 -0.01 3.31 16 27 H 0.09 3.76 8.14 -2.39 -0.02 3.74 16 28 H 0.07 2.46 8.05 -2.39 -0.02 2.44 16 29 H 0.04 1.21 7.88 -2.39 -0.02 1.19 16 30 H 0.05 1.01 7.82 -2.39 -0.02 0.99 16 31 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.07 2.08 7.67 -2.39 -0.02 2.06 16 37 H 0.04 1.13 7.99 -2.39 -0.02 1.11 16 38 H 0.13 4.66 8.09 -2.39 -0.02 4.64 16 39 H 0.11 4.34 5.22 -5.16 -0.03 4.31 16 40 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 41 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 42 H 0.07 2.76 7.59 -2.38 -0.02 2.74 16 Total: -1.00 -58.99 333.61 0.77 -58.23 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 0.96 Total: 24.67 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: 4.63 Total: -4.91 kcal Atomic # 7 Polarization: -90.72 SS G_CDS: -6.82 Total: -97.53 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.04 Total: -25.00 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Total: -58.99 0.77 -58.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700854566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.013 kcal (2) G-P(sol) polarization free energy of solvation -58.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds