Wall clock time and date at job start Mon Mar 30 2020 05:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99986 * 2 1 4 4 H 1.48495 * 109.47524 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47456 * 300.00989 * 3 2 1 6 6 H 1.48503 * 109.46858 * 60.00410 * 3 2 1 7 7 C 1.37879 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99867 * 175.04766 * 7 2 1 9 9 C 1.50697 * 119.99948 * 355.31396 * 7 2 1 10 10 C 1.52999 * 115.55322 * 279.20924 * 9 7 2 11 11 N 1.46499 * 109.46871 * 294.82178 * 10 9 7 12 12 C 1.34782 * 119.99414 * 184.79336 * 11 10 9 13 13 O 1.21278 * 120.00464 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.99397 * 180.02562 * 12 11 10 15 15 C 1.53005 * 109.46854 * 179.97438 * 14 12 11 16 16 N 1.46894 * 109.47167 * 180.02562 * 15 14 12 17 17 C 1.48531 * 111.00157 * 52.60381 * 16 15 14 18 18 C 1.54939 * 103.22660 * 159.72308 * 17 16 15 19 19 C 1.54596 * 102.92108 * 322.58460 * 18 17 16 20 20 C 1.47907 * 111.00148 * 170.00355 * 16 15 14 21 21 C 1.53002 * 117.49516 * 133.49895 * 9 7 2 22 22 C 1.52995 * 60.00245 * 252.51352 * 21 9 7 23 23 H 0.96995 * 120.00738 * 4.99088 * 1 2 3 24 24 H 1.08998 * 109.46807 * 54.82216 * 10 9 7 25 25 H 1.08999 * 109.47036 * 174.81704 * 10 9 7 26 26 H 0.96990 * 120.00314 * 4.78746 * 11 10 9 27 27 H 1.08995 * 109.47212 * 299.99268 * 14 12 11 28 28 H 1.09001 * 109.47609 * 60.00190 * 14 12 11 29 29 H 1.09004 * 109.47054 * 299.99735 * 15 14 12 30 30 H 1.09003 * 109.47248 * 59.99819 * 15 14 12 31 31 H 1.09003 * 110.66433 * 278.15380 * 17 16 15 32 32 H 1.08994 * 110.66784 * 41.28914 * 17 16 15 33 33 H 1.09004 * 110.72407 * 204.22751 * 18 17 16 34 34 H 1.09003 * 110.72658 * 80.94529 * 18 17 16 35 35 H 1.08997 * 110.31018 * 263.03922 * 19 18 17 36 36 H 1.09006 * 110.39021 * 140.91975 * 19 18 17 37 37 H 1.08994 * 109.91356 * 333.50399 * 20 16 15 38 38 H 1.09001 * 109.91946 * 94.60324 * 20 16 15 39 39 H 1.09003 * 117.50235 * 0.02562 * 21 9 7 40 40 H 1.09007 * 117.49782 * 145.02107 * 21 9 7 41 41 H 1.09003 * 117.49823 * 252.51352 * 22 21 9 42 42 H 1.08996 * 117.52003 * 107.48186 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0815 -1.1958 -0.0813 9 6 1.2548 -2.4970 0.1055 10 6 0.8319 -2.9019 1.5190 11 7 2.0241 -3.1605 2.3302 12 6 1.8950 -3.6270 3.5881 13 8 0.7920 -3.8322 4.0486 14 6 3.1214 -3.8924 4.4227 15 6 2.6993 -4.4114 5.7987 16 7 3.8946 -4.6696 6.6125 17 6 4.7817 -3.4788 6.6483 18 6 5.6512 -3.7221 7.9074 19 6 4.6526 -4.3625 8.8986 20 6 3.5292 -4.9426 8.0195 21 6 1.6414 -3.6154 -0.8644 22 6 0.3184 -2.8689 -1.0459 23 1 -0.4851 0.8368 -0.0731 24 1 0.2533 -2.0958 1.9701 25 1 0.2221 -3.8041 1.4714 26 1 2.9062 -2.9961 1.9620 27 1 3.7433 -4.6383 3.9278 28 1 3.6873 -2.9683 4.5413 29 1 2.0776 -3.6652 6.2935 30 1 2.1332 -5.3354 5.6805 31 1 5.4034 -3.4352 5.7540 32 1 4.1959 -2.5659 6.7558 33 1 6.0337 -2.7799 8.2999 34 1 6.4681 -4.4086 7.6852 35 1 4.2522 -3.6063 9.5739 36 1 5.1374 -5.1569 9.4661 37 1 2.5829 -4.4574 8.2581 38 1 3.4459 -6.0176 8.1796 39 1 2.4383 -3.4089 -1.5789 40 1 1.5947 -4.6400 -0.4954 41 1 -0.5989 -3.4024 -0.7964 42 1 0.2442 -2.1709 -1.8798 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700857700.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:47 Heat of formation + Delta-G solvation = -21.746998 kcal Electronic energy + Delta-G solvation = -20197.702582 eV Core-core repulsion = 17177.774544 eV Total energy + Delta-G solvation = -3019.928038 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.50213 -38.58823 -36.68986 -33.34028 -33.26447 -32.00288 -29.67852 -28.81554 -26.32781 -25.23533 -23.32412 -21.24459 -21.04393 -20.77167 -19.63535 -19.12666 -16.89940 -16.27390 -16.16729 -15.36597 -15.30776 -14.89552 -14.68876 -14.20773 -13.84998 -13.61171 -13.17846 -12.92795 -12.61810 -12.48185 -11.99632 -11.69094 -11.58286 -11.54363 -11.37212 -11.22232 -11.03069 -10.96538 -10.89293 -10.73161 -10.53756 -10.26427 -9.63207 -9.26832 -9.04218 -8.53777 -8.52145 -8.27360 -8.08438 -6.10033 -4.19505 3.21367 3.22768 3.31967 3.33593 3.64943 4.14439 4.33128 4.49766 4.53177 4.79434 5.05165 5.13235 5.17022 5.19231 5.28319 5.33796 5.46439 5.51746 5.59491 5.64876 5.72934 5.79981 5.82947 5.96863 6.00861 6.03622 6.09814 6.32277 6.47225 6.56242 6.68846 6.76998 6.88588 6.93641 7.09484 7.28540 7.39019 7.49069 7.79514 8.29928 8.32158 8.81619 8.88847 9.47693 10.97552 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022023 B = 0.004088 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.073982 B = 6847.760751 C = 7592.344269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.073 3.927 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.500 4.500 8 H 0.061 0.939 9 C 0.026 3.974 10 C 0.163 3.837 11 N -0.703 5.703 12 C 0.504 3.496 13 O -0.561 6.561 14 C -0.140 4.140 15 C 0.065 3.935 16 N -0.520 5.520 17 C 0.028 3.972 18 C -0.124 4.124 19 C -0.131 4.131 20 C 0.035 3.965 21 C -0.210 4.210 22 C -0.148 4.148 23 H 0.261 0.739 24 H 0.069 0.931 25 H 0.039 0.961 26 H 0.401 0.599 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.045 0.955 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.427 -7.069 12.266 17.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.538 4.538 8 H 0.079 0.921 9 C 0.025 3.975 10 C 0.040 3.960 11 N -0.351 5.351 12 C 0.289 3.711 13 O -0.441 6.441 14 C -0.181 4.181 15 C -0.064 4.064 16 N -0.244 5.244 17 C -0.100 4.100 18 C -0.162 4.162 19 C -0.169 4.169 20 C -0.093 4.093 21 C -0.247 4.247 22 C -0.186 4.186 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.057 0.943 26 H 0.235 0.765 27 H 0.116 0.884 28 H 0.108 0.892 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.064 0.936 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.704 -7.524 12.396 16.912 hybrid contribution 0.268 1.796 -0.001 1.816 sum 8.972 -5.728 12.395 16.339 Atomic orbital electron populations 1.69990 1.05895 1.26800 1.48326 1.24994 0.94808 0.98975 0.94328 0.86578 0.80170 0.83847 0.77657 1.19681 1.21002 1.20975 1.20403 0.92678 0.88570 1.52112 0.92109 1.19045 0.99081 0.93024 0.86319 1.20965 0.85402 0.98235 0.91414 1.45998 1.11430 1.64396 1.13325 1.20457 0.90559 0.77624 0.82450 1.90653 1.27851 1.53622 1.72015 1.21671 0.97317 1.03217 0.95870 1.21995 0.90884 1.01300 0.92188 1.64835 1.15803 1.34614 1.09189 1.23306 0.95511 0.92281 0.98877 1.22481 0.98006 1.00707 0.95003 1.22399 0.96445 1.00236 0.97865 1.22861 0.97218 1.01388 0.87870 1.22982 0.99834 0.95744 1.06128 1.22493 0.91340 1.01755 1.02989 0.92901 0.91323 0.94289 0.76481 0.88438 0.89198 0.93801 0.89818 0.89689 0.93514 0.91167 0.90756 0.91636 0.91106 0.93614 0.90363 0.90386 0.91660 0.91786 0.89709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.18 12.85 55.43 0.71 -23.46 16 2 C 0.07 1.92 5.44 -17.82 -0.10 1.83 16 3 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.50 -12.75 8.57 -34.44 -0.30 -13.04 16 8 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 9 C 0.03 0.61 1.40 -155.66 -0.22 0.39 16 10 C 0.16 3.71 5.51 -4.04 -0.02 3.69 16 11 N -0.70 -13.54 5.48 -60.30 -0.33 -13.87 16 12 C 0.50 9.28 7.83 -10.98 -0.09 9.19 16 13 O -0.56 -12.40 15.98 5.56 0.09 -12.31 16 14 C -0.14 -1.91 5.36 -27.88 -0.15 -2.06 16 15 C 0.06 0.87 4.32 -3.82 -0.02 0.86 16 16 N -0.52 -6.07 5.40 -230.45 -1.24 -7.31 16 17 C 0.03 0.29 5.10 -1.90 -0.01 0.28 16 18 C -0.12 -1.04 7.06 -24.87 -0.18 -1.22 16 19 C -0.13 -1.09 6.93 -25.37 -0.18 -1.26 16 20 C 0.03 0.35 6.70 -2.75 -0.02 0.33 16 21 C -0.21 -4.35 9.95 -26.73 -0.27 -4.62 16 22 C -0.15 -3.38 9.39 -26.73 -0.25 -3.63 16 23 H 0.26 6.93 8.32 -40.82 -0.34 6.60 16 24 H 0.07 1.79 8.14 -51.93 -0.42 1.37 16 25 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 26 H 0.40 7.03 8.33 -40.82 -0.34 6.69 16 27 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.09 1.11 6.79 -51.93 -0.35 0.76 16 29 H 0.04 0.65 7.77 -51.93 -0.40 0.24 16 30 H 0.08 1.21 8.10 -51.93 -0.42 0.78 16 31 H 0.08 0.82 7.66 -51.93 -0.40 0.43 16 32 H 0.05 0.50 8.00 -51.93 -0.42 0.09 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.48 7.57 -51.93 -0.39 0.09 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 LS Contribution 342.13 15.07 5.16 5.16 Total: -1.00 -29.18 342.13 -9.76 -38.93 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -7.34 Total: 6.78 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -1.78 Total: -9.27 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: -0.86 Total: -44.65 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.09 Total: -12.31 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.18 -9.76 -38.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700857700.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.187 kcal (2) G-P(sol) polarization free energy of solvation -29.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds