Wall clock time and date at job start Mon Mar 30 2020 05:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99986 * 2 1 4 4 H 1.48495 * 109.47524 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47456 * 300.00989 * 3 2 1 6 6 H 1.48503 * 109.46858 * 60.00410 * 3 2 1 7 7 C 1.37879 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99867 * 175.04766 * 7 2 1 9 9 C 1.50697 * 119.99948 * 355.31396 * 7 2 1 10 10 C 1.52999 * 115.55322 * 279.20924 * 9 7 2 11 11 N 1.46499 * 109.46871 * 294.82178 * 10 9 7 12 12 C 1.34782 * 119.99414 * 184.79336 * 11 10 9 13 13 O 1.21278 * 120.00464 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.99397 * 180.02562 * 12 11 10 15 15 C 1.53005 * 109.46854 * 179.97438 * 14 12 11 16 16 N 1.46894 * 109.47167 * 180.02562 * 15 14 12 17 17 C 1.48531 * 111.00157 * 52.60381 * 16 15 14 18 18 C 1.54939 * 103.22660 * 159.72308 * 17 16 15 19 19 C 1.54596 * 102.92108 * 322.58460 * 18 17 16 20 20 C 1.47907 * 111.00148 * 170.00355 * 16 15 14 21 21 C 1.53002 * 117.49516 * 133.49895 * 9 7 2 22 22 C 1.52995 * 60.00245 * 252.51352 * 21 9 7 23 23 H 0.96995 * 120.00738 * 4.99088 * 1 2 3 24 24 H 1.08998 * 109.46807 * 54.82216 * 10 9 7 25 25 H 1.08999 * 109.47036 * 174.81704 * 10 9 7 26 26 H 0.96990 * 120.00314 * 4.78746 * 11 10 9 27 27 H 1.08995 * 109.47212 * 299.99268 * 14 12 11 28 28 H 1.09001 * 109.47609 * 60.00190 * 14 12 11 29 29 H 1.09004 * 109.47054 * 299.99735 * 15 14 12 30 30 H 1.09003 * 109.47248 * 59.99819 * 15 14 12 31 31 H 1.09003 * 110.66433 * 278.15380 * 17 16 15 32 32 H 1.08994 * 110.66784 * 41.28914 * 17 16 15 33 33 H 1.09004 * 110.72407 * 204.22751 * 18 17 16 34 34 H 1.09003 * 110.72658 * 80.94529 * 18 17 16 35 35 H 1.08997 * 110.31018 * 263.03922 * 19 18 17 36 36 H 1.09006 * 110.39021 * 140.91975 * 19 18 17 37 37 H 1.08994 * 109.91356 * 333.50399 * 20 16 15 38 38 H 1.09001 * 109.91946 * 94.60324 * 20 16 15 39 39 H 1.09003 * 117.50235 * 0.02562 * 21 9 7 40 40 H 1.09007 * 117.49782 * 145.02107 * 21 9 7 41 41 H 1.09003 * 117.49823 * 252.51352 * 22 21 9 42 42 H 1.08996 * 117.52003 * 107.48186 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0815 -1.1958 -0.0813 9 6 1.2548 -2.4970 0.1055 10 6 0.8319 -2.9019 1.5190 11 7 2.0241 -3.1605 2.3302 12 6 1.8950 -3.6270 3.5881 13 8 0.7920 -3.8322 4.0486 14 6 3.1214 -3.8924 4.4227 15 6 2.6993 -4.4114 5.7987 16 7 3.8946 -4.6696 6.6125 17 6 4.7817 -3.4788 6.6483 18 6 5.6512 -3.7221 7.9074 19 6 4.6526 -4.3625 8.8986 20 6 3.5292 -4.9426 8.0195 21 6 1.6414 -3.6154 -0.8644 22 6 0.3184 -2.8689 -1.0459 23 1 -0.4851 0.8368 -0.0731 24 1 0.2533 -2.0958 1.9701 25 1 0.2221 -3.8041 1.4714 26 1 2.9062 -2.9961 1.9620 27 1 3.7433 -4.6383 3.9278 28 1 3.6873 -2.9683 4.5413 29 1 2.0776 -3.6652 6.2935 30 1 2.1332 -5.3354 5.6805 31 1 5.4034 -3.4352 5.7540 32 1 4.1959 -2.5659 6.7558 33 1 6.0337 -2.7799 8.2999 34 1 6.4681 -4.4086 7.6852 35 1 4.2522 -3.6063 9.5739 36 1 5.1374 -5.1569 9.4661 37 1 2.5829 -4.4574 8.2581 38 1 3.4459 -6.0176 8.1796 39 1 2.4383 -3.4089 -1.5789 40 1 1.5947 -4.6400 -0.4954 41 1 -0.5989 -3.4024 -0.7964 42 1 0.2442 -2.1709 -1.8798 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700857700.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:47 Heat of formation + Delta-G solvation = -40.769327 kcal Electronic energy + Delta-G solvation = -20198.527452 eV Core-core repulsion = 17177.774544 eV Total energy + Delta-G solvation = -3020.752908 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.84521 -39.67118 -38.45517 -34.93942 -34.33296 -33.97737 -30.68270 -29.65675 -28.05445 -27.06430 -24.43763 -22.95453 -21.93439 -21.68982 -21.33600 -20.68003 -18.40802 -17.87115 -17.14242 -16.78423 -16.49410 -16.39695 -16.38356 -15.64959 -15.04775 -14.94409 -14.60670 -14.25633 -13.80607 -13.76826 -13.48139 -13.34132 -12.93668 -12.86820 -12.76169 -12.35313 -12.30424 -12.26076 -12.03754 -12.02954 -11.87955 -11.43071 -11.39813 -10.94406 -10.89322 -10.46468 -10.05192 -9.83573 -9.44038 -8.10055 -6.24051 1.41058 1.45007 1.54157 1.72587 2.30551 2.42753 3.08538 3.18835 3.51388 3.70428 3.76083 3.95239 4.05123 4.12404 4.22349 4.27829 4.38357 4.53935 4.55006 4.65155 4.67323 4.71257 4.73965 4.85800 4.95898 4.96749 4.99486 5.00041 5.05166 5.09608 5.22102 5.27211 5.33791 5.54580 5.59808 5.69506 5.78833 5.92597 5.99065 6.36461 6.76460 6.85234 7.38541 7.46110 8.97537 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022023 B = 0.004088 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.073982 B = 6847.760751 C = 7592.344269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.023 3.977 3 Si 0.950 3.050 4 H -0.258 1.258 5 H -0.285 1.285 6 H -0.289 1.289 7 C -0.503 4.503 8 H 0.066 0.934 9 C 0.005 3.995 10 C 0.179 3.821 11 N -0.699 5.699 12 C 0.502 3.498 13 O -0.602 6.602 14 C -0.125 4.125 15 C 0.072 3.928 16 N -0.523 5.523 17 C 0.021 3.979 18 C -0.120 4.120 19 C -0.128 4.128 20 C 0.028 3.972 21 C -0.175 4.175 22 C -0.160 4.160 23 H 0.258 0.742 24 H 0.025 0.975 25 H 0.035 0.965 26 H 0.412 0.588 27 H 0.122 0.878 28 H 0.109 0.891 29 H 0.024 0.976 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.039 0.961 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.036 0.964 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.067 0.933 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.117 -7.582 12.847 19.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.177 4.177 3 Si 0.776 3.224 4 H -0.182 1.182 5 H -0.211 1.211 6 H -0.216 1.216 7 C -0.540 4.540 8 H 0.084 0.916 9 C 0.004 3.996 10 C 0.054 3.946 11 N -0.348 5.348 12 C 0.289 3.711 13 O -0.484 6.484 14 C -0.164 4.164 15 C -0.057 4.057 16 N -0.247 5.247 17 C -0.107 4.107 18 C -0.158 4.158 19 C -0.166 4.166 20 C -0.100 4.100 21 C -0.212 4.212 22 C -0.199 4.199 23 H 0.067 0.933 24 H 0.044 0.956 25 H 0.053 0.947 26 H 0.248 0.752 27 H 0.140 0.860 28 H 0.127 0.873 29 H 0.042 0.958 30 H 0.089 0.911 31 H 0.112 0.888 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.054 0.946 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.086 0.914 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.442 -8.047 12.976 19.080 hybrid contribution -0.587 1.911 -0.163 2.006 sum 10.856 -6.136 12.813 17.880 Atomic orbital electron populations 1.70118 1.07349 1.27244 1.49958 1.25723 0.95447 1.02153 0.94406 0.85628 0.79655 0.80038 0.77057 1.18214 1.21109 1.21586 1.20719 0.93035 0.89436 1.50854 0.91584 1.19071 0.99988 0.93786 0.86749 1.20524 0.86293 0.96379 0.91377 1.45893 1.10832 1.64526 1.13554 1.21288 0.91530 0.76142 0.82097 1.90638 1.29994 1.55112 1.72678 1.21618 0.95032 1.04818 0.94976 1.21835 0.91472 1.00004 0.92403 1.64858 1.14773 1.35248 1.09825 1.23431 0.95505 0.91343 1.00393 1.22490 0.97750 1.01555 0.93962 1.22406 0.95753 1.00773 0.97671 1.22965 0.97702 1.01792 0.87498 1.22972 0.98188 0.95902 1.04150 1.22426 0.92738 1.02379 1.02331 0.93267 0.95630 0.94668 0.75188 0.85963 0.87318 0.95770 0.91116 0.88823 0.94295 0.89840 0.90145 0.91093 0.89707 0.94563 0.89912 0.89467 0.89398 0.91402 0.91734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.33 12.85 21.45 0.28 -51.05 16 2 C 0.02 1.22 5.44 84.66 0.46 1.68 16 3 Si 0.95 41.71 29.54 68.60 2.03 43.74 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 7 C -0.50 -25.30 8.57 25.60 0.22 -25.08 16 8 H 0.07 3.19 7.82 -2.91 -0.02 3.17 16 9 C 0.00 0.22 1.40 -52.93 -0.07 0.15 16 10 C 0.18 8.22 5.51 86.38 0.48 8.69 16 11 N -0.70 -26.37 5.48 -463.06 -2.54 -28.90 16 12 C 0.50 18.20 7.83 87.66 0.69 18.88 16 13 O -0.60 -27.01 15.98 -3.02 -0.05 -27.06 16 14 C -0.12 -3.17 5.36 29.85 0.16 -3.01 16 15 C 0.07 1.89 4.32 86.31 0.37 2.26 16 16 N -0.52 -11.34 5.40 -883.01 -4.76 -16.11 16 17 C 0.02 0.38 5.10 86.65 0.44 0.82 16 18 C -0.12 -1.68 7.06 31.80 0.22 -1.46 16 19 C -0.13 -1.83 6.93 31.47 0.22 -1.61 16 20 C 0.03 0.54 6.70 86.44 0.58 1.12 16 21 C -0.18 -6.91 9.95 30.59 0.30 -6.61 16 22 C -0.16 -7.33 9.39 30.59 0.29 -7.05 16 23 H 0.26 14.06 8.32 -92.71 -0.77 13.29 16 24 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.04 1.62 8.09 -2.39 -0.02 1.60 16 26 H 0.41 13.67 8.33 -92.72 -0.77 12.90 16 27 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.11 2.42 6.79 -2.39 -0.02 2.40 16 29 H 0.02 0.72 7.77 -2.38 -0.02 0.70 16 30 H 0.07 2.03 8.10 -2.39 -0.02 2.01 16 31 H 0.09 1.54 7.66 -2.39 -0.02 1.52 16 32 H 0.04 0.77 8.00 -2.39 -0.02 0.76 16 33 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.04 0.75 7.57 -2.39 -0.02 0.73 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 40 H 0.09 3.09 8.14 -2.38 -0.02 3.07 16 41 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 42 H 0.06 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -63.18 342.13 -0.48 -63.66 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 0.21 Total: 26.93 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: 4.36 Total: -11.21 kcal Atomic # 7 Polarization: -89.04 SS G_CDS: -7.03 Total: -96.06 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.05 Total: -27.06 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -63.18 -0.48 -63.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700857700.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.894 kcal (2) G-P(sol) polarization free energy of solvation -63.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds