Wall clock time and date at job start Mon Mar 30 2020 05:39:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53003 * 115.56103 * 2 1
4 4 C 1.53076 * 117.51672 * 214.29857 * 2 1 3
5 5 C 1.53000 * 117.50106 * 145.68680 * 2 1 3
6 6 C 1.52998 * 117.49910 * 215.00467 * 5 2 1
7 7 C 1.50696 * 117.49922 * 0.02562 * 5 2 1
8 8 O 1.21283 * 120.00367 * 101.57696 * 7 5 2
9 9 N 1.34784 * 119.99791 * 281.57859 * 7 5 2
10 10 C 1.46957 * 120.59375 * 175.85536 * 9 7 5
11 11 C 1.53371 * 108.63802 * 235.24968 * 10 9 7
12 12 N 1.46965 * 108.63162 * 310.57612 * 11 10 9
13 13 C 1.36937 * 120.59482 * 235.19853 * 12 11 10
14 14 H 1.08003 * 119.99928 * 35.35081 * 13 12 11
15 15 C 1.38809 * 120.00024 * 215.34989 * 13 12 11
16 16 N 1.31622 * 119.99976 * 196.65967 * 15 13 12
17 17 Si 1.86798 * 120.00018 * 16.94000 * 15 13 12
18 18 H 1.48501 * 109.47271 * 271.74564 * 17 15 13
19 19 H 1.48503 * 109.47316 * 31.74962 * 17 15 13
20 20 H 1.48502 * 109.47117 * 151.74891 * 17 15 13
21 21 C 1.46962 * 118.81180 * 55.48336 * 12 11 10
22 22 C 1.46963 * 120.59091 * 355.88287 * 9 7 5
23 23 H 1.09001 * 109.46990 * 274.30813 * 1 2 3
24 24 H 1.08995 * 109.47096 * 34.30933 * 1 2 3
25 25 H 1.08997 * 109.46907 * 154.31231 * 1 2 3
26 26 H 1.09005 * 109.47210 * 205.68868 * 3 2 1
27 27 H 1.09003 * 109.47107 * 325.69149 * 3 2 1
28 28 H 1.09003 * 109.47191 * 85.68968 * 3 2 1
29 29 H 1.08998 * 117.49399 * 145.03762 * 4 2 1
30 30 H 1.08994 * 117.50888 * 359.97438 * 4 2 1
31 31 H 1.09008 * 109.47094 * 209.53534 * 6 5 2
32 32 H 1.08999 * 109.47236 * 329.53086 * 6 5 2
33 33 H 1.09001 * 109.47625 * 89.53677 * 6 5 2
34 34 H 1.09009 * 109.60626 * 115.50285 * 10 9 7
35 35 H 1.09000 * 109.75359 * 355.08140 * 10 9 7
36 36 H 1.08999 * 109.61025 * 190.83899 * 11 10 9
37 37 H 1.08993 * 109.60604 * 70.32231 * 11 10 9
38 38 H 0.97000 * 119.99804 * 179.97438 * 16 15 13
39 39 H 1.08996 * 109.61466 * 64.25925 * 21 12 11
40 40 H 1.09003 * 109.61277 * 184.77544 * 21 12 11
41 41 H 1.09001 * 109.60807 * 244.49448 * 22 9 7
42 42 H 1.09005 * 109.61382 * 4.83533 * 22 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.1901 1.3803 0.0000
4 6 2.2372 -1.1215 -0.7650
5 6 2.2365 -1.1209 0.7650
6 6 3.5487 -0.7757 1.4719
7 6 1.3721 -2.1409 1.4604
8 8 1.1973 -3.2310 0.9585
9 7 0.7932 -1.8416 2.6402
10 6 -0.1241 -2.7912 3.2855
11 6 -1.4576 -2.0813 3.5507
12 7 -1.1830 -0.7993 4.2147
13 6 -1.7719 -0.4947 5.4129
14 1 -1.9470 -1.2724 6.1416
15 6 -2.1439 0.8134 5.6908
16 7 -2.3992 1.1758 6.9301
17 14 -2.2896 2.0575 4.3050
18 1 -0.9718 2.7036 4.0792
19 1 -2.7218 1.3670 3.0633
20 1 -3.2913 3.0909 4.6709
21 6 -0.2701 0.1528 3.5666
22 6 1.0677 -0.5595 3.3041
23 1 -0.3633 0.0772 1.0248
24 1 -0.3633 0.8488 -0.5792
25 1 -0.3633 -0.9261 -0.4454
26 1 3.1824 1.3085 -0.4455
27 1 1.5811 2.0743 -0.5793
28 1 2.2772 1.7414 1.0248
29 1 3.1724 -0.8756 -1.2679
30 1 1.6124 -1.8596 -1.2679
31 1 4.1844 -1.6604 1.5104
32 1 4.0598 0.0153 0.9232
33 1 3.3369 -0.4362 2.4858
34 1 0.3041 -3.1299 4.2290
35 1 -0.2891 -3.6468 2.6307
36 1 -2.0801 -2.7013 4.1958
37 1 -1.9705 -1.9016 2.6060
38 1 -2.6587 2.0900 7.1244
39 1 -0.7005 0.4879 2.6230
40 1 -0.1082 1.0085 4.2221
41 1 1.5807 -0.7392 4.2488
42 1 1.6928 0.0594 2.6603
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000702141082.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:39:59
Heat of formation + Delta-G solvation = 18.005881 kcal
Electronic energy + Delta-G solvation = -22173.308322 eV
Core-core repulsion = 19155.104098 eV
Total energy + Delta-G solvation = -3018.204224 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-40.57542 -37.93242 -36.83360 -33.93385 -31.66861 -30.90455 -30.47890 -28.23510
-27.25178 -26.93123 -24.11218 -23.22452 -22.30957 -20.42834 -19.49081 -18.22031
-16.80417 -16.10057 -15.71905 -15.38567 -14.96376 -14.50708 -14.27227 -14.18478
-13.82914 -13.52943 -13.28362 -12.82329 -12.68111 -12.51530 -12.38396 -12.16971
-12.14550 -12.06486 -11.82184 -11.66046 -11.21790 -11.03642 -10.89354 -10.45282
-10.37842 -10.13576 -9.95463 -9.75144 -9.66942 -9.19770 -8.81790 -8.31437
-6.90808 -6.04291 -3.49122 2.81663 3.21523 3.23432 3.40753 3.43832
3.64124 4.43545 4.48979 4.57865 4.69866 4.86421 4.91239 4.99832
5.25347 5.40703 5.51118 5.55585 5.57061 5.60110 5.65797 5.69276
5.76548 5.80207 5.83728 5.89206 5.94998 5.95773 6.00748 6.07777
6.12074 6.16622 6.25290 6.29368 6.43378 6.57204 6.73644 6.92928
7.77333 7.92787 8.27245 8.47374 8.84328 9.60990 10.01146 11.11398
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.022952 B = 0.007438 C = 0.006419
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1219.622229 B = 3763.750494 C = 4361.118095
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.105 4.105
3 C -0.116 4.116
4 C -0.139 4.139
5 C -0.152 4.152
6 C -0.117 4.117
7 C 0.551 3.449
8 O -0.555 6.555
9 N -0.592 5.592
10 C 0.094 3.906
11 C 0.134 3.866
12 N -0.604 5.604
13 C -0.266 4.266
14 H 0.084 0.916
15 C 0.030 3.970
16 N -0.906 5.906
17 Si 0.883 3.117
18 H -0.284 1.284
19 H -0.271 1.271
20 H -0.301 1.301
21 C 0.112 3.888
22 C 0.086 3.914
23 H 0.074 0.926
24 H 0.063 0.937
25 H 0.057 0.943
26 H 0.059 0.941
27 H 0.063 0.937
28 H 0.064 0.936
29 H 0.099 0.901
30 H 0.100 0.900
31 H 0.062 0.938
32 H 0.068 0.932
33 H 0.070 0.930
34 H 0.066 0.934
35 H 0.084 0.916
36 H 0.076 0.924
37 H 0.026 0.974
38 H 0.264 0.736
39 H 0.033 0.967
40 H 0.082 0.918
41 H 0.071 0.929
42 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.183 -0.486 -12.767 16.338
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.105 4.105
3 C -0.173 4.173
4 C -0.176 4.176
5 C -0.155 4.155
6 C -0.174 4.174
7 C 0.338 3.662
8 O -0.433 6.433
9 N -0.323 5.323
10 C -0.030 4.030
11 C 0.008 3.992
12 N -0.328 5.328
13 C -0.394 4.394
14 H 0.102 0.898
15 C -0.170 4.170
16 N -0.548 5.548
17 Si 0.713 3.287
18 H -0.212 1.212
19 H -0.196 1.196
20 H -0.229 1.229
21 C -0.014 4.014
22 C -0.038 4.038
23 H 0.093 0.907
24 H 0.082 0.918
25 H 0.076 0.924
26 H 0.078 0.922
27 H 0.082 0.918
28 H 0.083 0.917
29 H 0.117 0.883
30 H 0.118 0.882
31 H 0.081 0.919
32 H 0.087 0.913
33 H 0.089 0.911
34 H 0.084 0.916
35 H 0.102 0.898
36 H 0.094 0.906
37 H 0.044 0.956
38 H 0.074 0.926
39 H 0.051 0.949
40 H 0.100 0.900
41 H 0.089 0.911
42 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges 9.992 -0.938 -12.860 16.313
hybrid contribution -0.119 0.827 -0.557 1.004
sum 9.873 -0.111 -13.417 16.658
Atomic orbital electron populations
1.21619 0.91626 1.02051 1.03533 1.21711 0.95181 0.91044 1.02598
1.21405 0.99811 0.93682 1.02365 1.23272 1.02354 1.00465 0.91549
1.21554 0.98650 1.00323 0.94977 1.21457 0.93539 1.01790 1.00595
1.19460 0.79321 0.86927 0.80444 1.90632 1.62979 1.23799 1.65928
1.47913 1.44907 1.18889 1.20632 1.22222 0.91376 0.92154 0.97204
1.21361 0.93257 0.88293 0.96313 1.44262 1.49966 1.15783 1.22830
1.18884 1.34784 0.95089 0.90645 0.89846 1.25473 0.97774 0.97703
0.96020 1.69798 1.49041 1.18328 1.17620 0.86917 0.77090 0.81117
0.83592 1.21172 1.19630 1.22856 1.21926 0.88935 0.93643 0.96874
1.22622 0.99459 0.84475 0.97276 0.90738 0.91828 0.92403 0.92226
0.91776 0.91734 0.88255 0.88154 0.91898 0.91318 0.91118 0.91558
0.89782 0.90557 0.95567 0.92604 0.94925 0.89986 0.91105 0.89869
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.82 8.87 37.16 0.33 -1.49 16
2 C -0.10 -1.29 2.31 -154.47 -0.36 -1.64 16
3 C -0.12 -1.15 8.60 37.16 0.32 -0.83 16
4 C -0.14 -1.68 9.07 -26.69 -0.24 -1.92 16
5 C -0.15 -2.05 1.36 -155.66 -0.21 -2.26 16
6 C -0.12 -1.29 8.86 37.16 0.33 -0.97 16
7 C 0.55 9.39 5.98 -10.98 -0.07 9.33 16
8 O -0.55 -11.06 16.16 5.56 0.09 -10.97 16
9 N -0.59 -10.22 2.95 -172.21 -0.51 -10.73 16
10 C 0.09 1.67 6.58 -3.60 -0.02 1.64 16
11 C 0.13 2.64 6.67 -3.60 -0.02 2.62 16
12 N -0.60 -13.79 2.62 -171.77 -0.45 -14.24 16
13 C -0.27 -7.15 9.97 -15.06 -0.15 -7.30 16
14 H 0.08 2.42 8.06 -52.48 -0.42 2.00 16
15 C 0.03 0.84 5.25 -17.43 -0.09 0.75 16
16 N -0.91 -26.93 13.97 55.49 0.78 -26.15 16
17 Si 0.88 21.51 24.46 -169.99 -4.16 17.35 16
18 H -0.28 -6.51 6.57 56.52 0.37 -6.14 16
19 H -0.27 -6.58 6.95 56.52 0.39 -6.19 16
20 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16
21 C 0.11 2.29 4.27 -3.36 -0.01 2.27 16
22 C 0.09 1.45 5.32 -3.36 -0.02 1.43 16
23 H 0.07 1.20 4.98 -51.93 -0.26 0.94 16
24 H 0.06 0.77 7.92 -51.93 -0.41 0.36 16
25 H 0.06 0.84 7.90 -51.93 -0.41 0.43 16
26 H 0.06 0.50 7.22 -51.93 -0.37 0.12 16
27 H 0.06 0.59 7.92 -51.93 -0.41 0.18 16
28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16
29 H 0.10 0.97 8.05 -51.93 -0.42 0.56 16
30 H 0.10 1.34 7.93 -51.93 -0.41 0.92 16
31 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16
32 H 0.07 0.62 6.59 -51.93 -0.34 0.28 16
33 H 0.07 0.79 5.81 -51.93 -0.30 0.49 16
34 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16
35 H 0.08 1.46 7.02 -51.93 -0.36 1.10 16
36 H 0.08 1.46 7.93 -51.93 -0.41 1.05 16
37 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16
38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16
39 H 0.03 0.67 4.71 -51.93 -0.24 0.43 16
40 H 0.08 1.80 5.03 -51.93 -0.26 1.54 16
41 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16
42 H 0.08 1.19 4.42 -51.93 -0.23 0.96 16
LS Contribution 314.41 15.07 4.74 4.74
Total: -1.00 -30.94 314.41 -6.29 -37.24
By element:
Atomic # 1 Polarization: 7.70 SS G_CDS: -6.56 Total: 1.14 kcal
Atomic # 6 Polarization: 1.85 SS G_CDS: -0.22 Total: 1.63 kcal
Atomic # 7 Polarization: -50.94 SS G_CDS: -0.18 Total: -51.12 kcal
Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.97 kcal
Atomic # 14 Polarization: 21.51 SS G_CDS: -4.16 Total: 17.35 kcal
Total LS contribution 4.74 Total: 4.74 kcal
Total: -30.94 -6.29 -37.24 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000702141082.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.244 kcal
(2) G-P(sol) polarization free energy of solvation -30.944 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.300 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.294 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.238 kcal
(6) G-S(sol) free energy of system = (1) + (5) 18.006 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds