Wall clock time and date at job start Mon Mar 30 2020 05:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 115.56103 * 2 1 4 4 C 1.53076 * 117.51672 * 214.29857 * 2 1 3 5 5 C 1.53000 * 117.50106 * 145.68680 * 2 1 3 6 6 C 1.52998 * 117.49910 * 215.00467 * 5 2 1 7 7 C 1.50696 * 117.49922 * 0.02562 * 5 2 1 8 8 O 1.21283 * 120.00367 * 101.57696 * 7 5 2 9 9 N 1.34784 * 119.99791 * 281.57859 * 7 5 2 10 10 C 1.46957 * 120.59375 * 175.85536 * 9 7 5 11 11 C 1.53371 * 108.63802 * 235.24968 * 10 9 7 12 12 N 1.46965 * 108.63162 * 310.57612 * 11 10 9 13 13 C 1.36937 * 120.59482 * 235.19853 * 12 11 10 14 14 H 1.08003 * 119.99928 * 35.35081 * 13 12 11 15 15 C 1.38809 * 120.00024 * 215.34989 * 13 12 11 16 16 N 1.31622 * 119.99976 * 196.65967 * 15 13 12 17 17 Si 1.86798 * 120.00018 * 16.94000 * 15 13 12 18 18 H 1.48501 * 109.47271 * 271.74564 * 17 15 13 19 19 H 1.48503 * 109.47316 * 31.74962 * 17 15 13 20 20 H 1.48502 * 109.47117 * 151.74891 * 17 15 13 21 21 C 1.46962 * 118.81180 * 55.48336 * 12 11 10 22 22 C 1.46963 * 120.59091 * 355.88287 * 9 7 5 23 23 H 1.09001 * 109.46990 * 274.30813 * 1 2 3 24 24 H 1.08995 * 109.47096 * 34.30933 * 1 2 3 25 25 H 1.08997 * 109.46907 * 154.31231 * 1 2 3 26 26 H 1.09005 * 109.47210 * 205.68868 * 3 2 1 27 27 H 1.09003 * 109.47107 * 325.69149 * 3 2 1 28 28 H 1.09003 * 109.47191 * 85.68968 * 3 2 1 29 29 H 1.08998 * 117.49399 * 145.03762 * 4 2 1 30 30 H 1.08994 * 117.50888 * 359.97438 * 4 2 1 31 31 H 1.09008 * 109.47094 * 209.53534 * 6 5 2 32 32 H 1.08999 * 109.47236 * 329.53086 * 6 5 2 33 33 H 1.09001 * 109.47625 * 89.53677 * 6 5 2 34 34 H 1.09009 * 109.60626 * 115.50285 * 10 9 7 35 35 H 1.09000 * 109.75359 * 355.08140 * 10 9 7 36 36 H 1.08999 * 109.61025 * 190.83899 * 11 10 9 37 37 H 1.08993 * 109.60604 * 70.32231 * 11 10 9 38 38 H 0.97000 * 119.99804 * 179.97438 * 16 15 13 39 39 H 1.08996 * 109.61466 * 64.25925 * 21 12 11 40 40 H 1.09003 * 109.61277 * 184.77544 * 21 12 11 41 41 H 1.09001 * 109.60807 * 244.49448 * 22 9 7 42 42 H 1.09005 * 109.61382 * 4.83533 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2372 -1.1215 -0.7650 5 6 2.2365 -1.1209 0.7650 6 6 3.5487 -0.7757 1.4719 7 6 1.3721 -2.1409 1.4604 8 8 1.1973 -3.2310 0.9585 9 7 0.7932 -1.8416 2.6402 10 6 -0.1241 -2.7912 3.2855 11 6 -1.4576 -2.0813 3.5507 12 7 -1.1830 -0.7993 4.2147 13 6 -1.7719 -0.4947 5.4129 14 1 -1.9470 -1.2724 6.1416 15 6 -2.1439 0.8134 5.6908 16 7 -2.3992 1.1758 6.9301 17 14 -2.2896 2.0575 4.3050 18 1 -0.9718 2.7036 4.0792 19 1 -2.7218 1.3670 3.0633 20 1 -3.2913 3.0909 4.6709 21 6 -0.2701 0.1528 3.5666 22 6 1.0677 -0.5595 3.3041 23 1 -0.3633 0.0772 1.0248 24 1 -0.3633 0.8488 -0.5792 25 1 -0.3633 -0.9261 -0.4454 26 1 3.1824 1.3085 -0.4455 27 1 1.5811 2.0743 -0.5793 28 1 2.2772 1.7414 1.0248 29 1 3.1724 -0.8756 -1.2679 30 1 1.6124 -1.8596 -1.2679 31 1 4.1844 -1.6604 1.5104 32 1 4.0598 0.0153 0.9232 33 1 3.3369 -0.4362 2.4858 34 1 0.3041 -3.1299 4.2290 35 1 -0.2891 -3.6468 2.6307 36 1 -2.0801 -2.7013 4.1958 37 1 -1.9705 -1.9016 2.6060 38 1 -2.6587 2.0900 7.1244 39 1 -0.7005 0.4879 2.6230 40 1 -0.1082 1.0085 4.2221 41 1 1.5807 -0.7392 4.2488 42 1 1.6928 0.0594 2.6603 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702141082.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:59 Heat of formation + Delta-G solvation = 18.005881 kcal Electronic energy + Delta-G solvation = -22173.308322 eV Core-core repulsion = 19155.104098 eV Total energy + Delta-G solvation = -3018.204224 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.57542 -37.93242 -36.83360 -33.93385 -31.66861 -30.90455 -30.47890 -28.23510 -27.25178 -26.93123 -24.11218 -23.22452 -22.30957 -20.42834 -19.49081 -18.22031 -16.80417 -16.10057 -15.71905 -15.38567 -14.96376 -14.50708 -14.27227 -14.18478 -13.82914 -13.52943 -13.28362 -12.82329 -12.68111 -12.51530 -12.38396 -12.16971 -12.14550 -12.06486 -11.82184 -11.66046 -11.21790 -11.03642 -10.89354 -10.45282 -10.37842 -10.13576 -9.95463 -9.75144 -9.66942 -9.19770 -8.81790 -8.31437 -6.90808 -6.04291 -3.49122 2.81663 3.21523 3.23432 3.40753 3.43832 3.64124 4.43545 4.48979 4.57865 4.69866 4.86421 4.91239 4.99832 5.25347 5.40703 5.51118 5.55585 5.57061 5.60110 5.65797 5.69276 5.76548 5.80207 5.83728 5.89206 5.94998 5.95773 6.00748 6.07777 6.12074 6.16622 6.25290 6.29368 6.43378 6.57204 6.73644 6.92928 7.77333 7.92787 8.27245 8.47374 8.84328 9.60990 10.01146 11.11398 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022952 B = 0.007438 C = 0.006419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.622229 B = 3763.750494 C = 4361.118095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.105 4.105 3 C -0.116 4.116 4 C -0.139 4.139 5 C -0.152 4.152 6 C -0.117 4.117 7 C 0.551 3.449 8 O -0.555 6.555 9 N -0.592 5.592 10 C 0.094 3.906 11 C 0.134 3.866 12 N -0.604 5.604 13 C -0.266 4.266 14 H 0.084 0.916 15 C 0.030 3.970 16 N -0.906 5.906 17 Si 0.883 3.117 18 H -0.284 1.284 19 H -0.271 1.271 20 H -0.301 1.301 21 C 0.112 3.888 22 C 0.086 3.914 23 H 0.074 0.926 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.026 0.974 38 H 0.264 0.736 39 H 0.033 0.967 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.183 -0.486 -12.767 16.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.105 4.105 3 C -0.173 4.173 4 C -0.176 4.176 5 C -0.155 4.155 6 C -0.174 4.174 7 C 0.338 3.662 8 O -0.433 6.433 9 N -0.323 5.323 10 C -0.030 4.030 11 C 0.008 3.992 12 N -0.328 5.328 13 C -0.394 4.394 14 H 0.102 0.898 15 C -0.170 4.170 16 N -0.548 5.548 17 Si 0.713 3.287 18 H -0.212 1.212 19 H -0.196 1.196 20 H -0.229 1.229 21 C -0.014 4.014 22 C -0.038 4.038 23 H 0.093 0.907 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.044 0.956 38 H 0.074 0.926 39 H 0.051 0.949 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.992 -0.938 -12.860 16.313 hybrid contribution -0.119 0.827 -0.557 1.004 sum 9.873 -0.111 -13.417 16.658 Atomic orbital electron populations 1.21619 0.91626 1.02051 1.03533 1.21711 0.95181 0.91044 1.02598 1.21405 0.99811 0.93682 1.02365 1.23272 1.02354 1.00465 0.91549 1.21554 0.98650 1.00323 0.94977 1.21457 0.93539 1.01790 1.00595 1.19460 0.79321 0.86927 0.80444 1.90632 1.62979 1.23799 1.65928 1.47913 1.44907 1.18889 1.20632 1.22222 0.91376 0.92154 0.97204 1.21361 0.93257 0.88293 0.96313 1.44262 1.49966 1.15783 1.22830 1.18884 1.34784 0.95089 0.90645 0.89846 1.25473 0.97774 0.97703 0.96020 1.69798 1.49041 1.18328 1.17620 0.86917 0.77090 0.81117 0.83592 1.21172 1.19630 1.22856 1.21926 0.88935 0.93643 0.96874 1.22622 0.99459 0.84475 0.97276 0.90738 0.91828 0.92403 0.92226 0.91776 0.91734 0.88255 0.88154 0.91898 0.91318 0.91118 0.91558 0.89782 0.90557 0.95567 0.92604 0.94925 0.89986 0.91105 0.89869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 8.87 37.16 0.33 -1.49 16 2 C -0.10 -1.29 2.31 -154.47 -0.36 -1.64 16 3 C -0.12 -1.15 8.60 37.16 0.32 -0.83 16 4 C -0.14 -1.68 9.07 -26.69 -0.24 -1.92 16 5 C -0.15 -2.05 1.36 -155.66 -0.21 -2.26 16 6 C -0.12 -1.29 8.86 37.16 0.33 -0.97 16 7 C 0.55 9.39 5.98 -10.98 -0.07 9.33 16 8 O -0.55 -11.06 16.16 5.56 0.09 -10.97 16 9 N -0.59 -10.22 2.95 -172.21 -0.51 -10.73 16 10 C 0.09 1.67 6.58 -3.60 -0.02 1.64 16 11 C 0.13 2.64 6.67 -3.60 -0.02 2.62 16 12 N -0.60 -13.79 2.62 -171.77 -0.45 -14.24 16 13 C -0.27 -7.15 9.97 -15.06 -0.15 -7.30 16 14 H 0.08 2.42 8.06 -52.48 -0.42 2.00 16 15 C 0.03 0.84 5.25 -17.43 -0.09 0.75 16 16 N -0.91 -26.93 13.97 55.49 0.78 -26.15 16 17 Si 0.88 21.51 24.46 -169.99 -4.16 17.35 16 18 H -0.28 -6.51 6.57 56.52 0.37 -6.14 16 19 H -0.27 -6.58 6.95 56.52 0.39 -6.19 16 20 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 21 C 0.11 2.29 4.27 -3.36 -0.01 2.27 16 22 C 0.09 1.45 5.32 -3.36 -0.02 1.43 16 23 H 0.07 1.20 4.98 -51.93 -0.26 0.94 16 24 H 0.06 0.77 7.92 -51.93 -0.41 0.36 16 25 H 0.06 0.84 7.90 -51.93 -0.41 0.43 16 26 H 0.06 0.50 7.22 -51.93 -0.37 0.12 16 27 H 0.06 0.59 7.92 -51.93 -0.41 0.18 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.10 0.97 8.05 -51.93 -0.42 0.56 16 30 H 0.10 1.34 7.93 -51.93 -0.41 0.92 16 31 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 32 H 0.07 0.62 6.59 -51.93 -0.34 0.28 16 33 H 0.07 0.79 5.81 -51.93 -0.30 0.49 16 34 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 35 H 0.08 1.46 7.02 -51.93 -0.36 1.10 16 36 H 0.08 1.46 7.93 -51.93 -0.41 1.05 16 37 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.03 0.67 4.71 -51.93 -0.24 0.43 16 40 H 0.08 1.80 5.03 -51.93 -0.26 1.54 16 41 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.08 1.19 4.42 -51.93 -0.23 0.96 16 LS Contribution 314.41 15.07 4.74 4.74 Total: -1.00 -30.94 314.41 -6.29 -37.24 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -6.56 Total: 1.14 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -0.22 Total: 1.63 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -0.18 Total: -51.12 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.16 Total: 17.35 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.94 -6.29 -37.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702141082.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.244 kcal (2) G-P(sol) polarization free energy of solvation -30.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds