Wall clock time and date at job start Mon Mar 30 2020 05:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 115.56103 * 2 1 4 4 C 1.53076 * 117.51672 * 214.29857 * 2 1 3 5 5 C 1.53000 * 117.50106 * 145.68680 * 2 1 3 6 6 C 1.52998 * 117.49910 * 215.00467 * 5 2 1 7 7 C 1.50696 * 117.49922 * 0.02562 * 5 2 1 8 8 O 1.21283 * 120.00367 * 101.57696 * 7 5 2 9 9 N 1.34784 * 119.99791 * 281.57859 * 7 5 2 10 10 C 1.46957 * 120.59375 * 175.85536 * 9 7 5 11 11 C 1.53371 * 108.63802 * 235.24968 * 10 9 7 12 12 N 1.46965 * 108.63162 * 310.57612 * 11 10 9 13 13 C 1.36937 * 120.59482 * 235.19853 * 12 11 10 14 14 H 1.08003 * 119.99928 * 35.35081 * 13 12 11 15 15 C 1.38809 * 120.00024 * 215.34989 * 13 12 11 16 16 N 1.31622 * 119.99976 * 196.65967 * 15 13 12 17 17 Si 1.86798 * 120.00018 * 16.94000 * 15 13 12 18 18 H 1.48501 * 109.47271 * 271.74564 * 17 15 13 19 19 H 1.48503 * 109.47316 * 31.74962 * 17 15 13 20 20 H 1.48502 * 109.47117 * 151.74891 * 17 15 13 21 21 C 1.46962 * 118.81180 * 55.48336 * 12 11 10 22 22 C 1.46963 * 120.59091 * 355.88287 * 9 7 5 23 23 H 1.09001 * 109.46990 * 274.30813 * 1 2 3 24 24 H 1.08995 * 109.47096 * 34.30933 * 1 2 3 25 25 H 1.08997 * 109.46907 * 154.31231 * 1 2 3 26 26 H 1.09005 * 109.47210 * 205.68868 * 3 2 1 27 27 H 1.09003 * 109.47107 * 325.69149 * 3 2 1 28 28 H 1.09003 * 109.47191 * 85.68968 * 3 2 1 29 29 H 1.08998 * 117.49399 * 145.03762 * 4 2 1 30 30 H 1.08994 * 117.50888 * 359.97438 * 4 2 1 31 31 H 1.09008 * 109.47094 * 209.53534 * 6 5 2 32 32 H 1.08999 * 109.47236 * 329.53086 * 6 5 2 33 33 H 1.09001 * 109.47625 * 89.53677 * 6 5 2 34 34 H 1.09009 * 109.60626 * 115.50285 * 10 9 7 35 35 H 1.09000 * 109.75359 * 355.08140 * 10 9 7 36 36 H 1.08999 * 109.61025 * 190.83899 * 11 10 9 37 37 H 1.08993 * 109.60604 * 70.32231 * 11 10 9 38 38 H 0.97000 * 119.99804 * 179.97438 * 16 15 13 39 39 H 1.08996 * 109.61466 * 64.25925 * 21 12 11 40 40 H 1.09003 * 109.61277 * 184.77544 * 21 12 11 41 41 H 1.09001 * 109.60807 * 244.49448 * 22 9 7 42 42 H 1.09005 * 109.61382 * 4.83533 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2372 -1.1215 -0.7650 5 6 2.2365 -1.1209 0.7650 6 6 3.5487 -0.7757 1.4719 7 6 1.3721 -2.1409 1.4604 8 8 1.1973 -3.2310 0.9585 9 7 0.7932 -1.8416 2.6402 10 6 -0.1241 -2.7912 3.2855 11 6 -1.4576 -2.0813 3.5507 12 7 -1.1830 -0.7993 4.2147 13 6 -1.7719 -0.4947 5.4129 14 1 -1.9470 -1.2724 6.1416 15 6 -2.1439 0.8134 5.6908 16 7 -2.3992 1.1758 6.9301 17 14 -2.2896 2.0575 4.3050 18 1 -0.9718 2.7036 4.0792 19 1 -2.7218 1.3670 3.0633 20 1 -3.2913 3.0909 4.6709 21 6 -0.2701 0.1528 3.5666 22 6 1.0677 -0.5595 3.3041 23 1 -0.3633 0.0772 1.0248 24 1 -0.3633 0.8488 -0.5792 25 1 -0.3633 -0.9261 -0.4454 26 1 3.1824 1.3085 -0.4455 27 1 1.5811 2.0743 -0.5793 28 1 2.2772 1.7414 1.0248 29 1 3.1724 -0.8756 -1.2679 30 1 1.6124 -1.8596 -1.2679 31 1 4.1844 -1.6604 1.5104 32 1 4.0598 0.0153 0.9232 33 1 3.3369 -0.4362 2.4858 34 1 0.3041 -3.1299 4.2290 35 1 -0.2891 -3.6468 2.6307 36 1 -2.0801 -2.7013 4.1958 37 1 -1.9705 -1.9016 2.6060 38 1 -2.6587 2.0900 7.1244 39 1 -0.7005 0.4879 2.6230 40 1 -0.1082 1.0085 4.2221 41 1 1.5807 -0.7392 4.2488 42 1 1.6928 0.0594 2.6603 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702141082.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:58 Heat of formation + Delta-G solvation = -1.540711 kcal Electronic energy + Delta-G solvation = -22174.155926 eV Core-core repulsion = 19155.104098 eV Total energy + Delta-G solvation = -3019.051828 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.80435 -39.23183 -38.29839 -35.64860 -33.57289 -32.41096 -31.56240 -29.15031 -28.81136 -27.94330 -25.73880 -24.80299 -23.77135 -21.76845 -20.72198 -19.67259 -18.46699 -17.66228 -16.98877 -16.80640 -16.51053 -16.09096 -15.62623 -15.49897 -15.23896 -14.74702 -14.54493 -14.26106 -14.14204 -13.92738 -13.70818 -13.43938 -13.30016 -13.16607 -12.92962 -12.76336 -12.63400 -12.46739 -12.25807 -12.11551 -12.05932 -11.78027 -11.66469 -11.03614 -10.84830 -10.77623 -10.34673 -9.89863 -8.77765 -8.19121 -5.61475 1.28555 1.41977 1.50271 1.52672 1.92259 2.39620 2.62681 3.06652 3.25427 3.39858 3.60131 3.73468 3.92046 4.05256 4.08910 4.10550 4.27270 4.30114 4.48485 4.50722 4.60409 4.62109 4.70199 4.78496 4.81139 4.84419 4.88781 4.89114 4.91405 5.00635 5.04008 5.06982 5.12730 5.27430 5.33442 5.45488 5.48801 5.87797 6.12293 6.42810 6.87234 7.12291 7.54498 7.98654 9.00336 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.022952 B = 0.007438 C = 0.006419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.622229 B = 3763.750494 C = 4361.118095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.098 4.098 3 C -0.115 4.115 4 C -0.131 4.131 5 C -0.167 4.167 6 C -0.113 4.113 7 C 0.548 3.452 8 O -0.588 6.588 9 N -0.596 5.596 10 C 0.102 3.898 11 C 0.136 3.864 12 N -0.617 5.617 13 C -0.256 4.256 14 H 0.049 0.951 15 C -0.023 4.023 16 N -0.953 5.953 17 Si 0.944 3.056 18 H -0.256 1.256 19 H -0.270 1.270 20 H -0.310 1.310 21 C 0.108 3.892 22 C 0.099 3.901 23 H 0.051 0.949 24 H 0.080 0.920 25 H 0.040 0.960 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.130 0.870 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.027 0.973 38 H 0.264 0.736 39 H 0.040 0.960 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.351 0.934 -15.143 19.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.099 4.099 3 C -0.171 4.171 4 C -0.168 4.168 5 C -0.170 4.170 6 C -0.170 4.170 7 C 0.338 3.662 8 O -0.470 6.470 9 N -0.326 5.326 10 C -0.022 4.022 11 C 0.010 3.990 12 N -0.342 5.342 13 C -0.386 4.386 14 H 0.066 0.934 15 C -0.219 4.219 16 N -0.598 5.598 17 Si 0.772 3.228 18 H -0.182 1.182 19 H -0.195 1.195 20 H -0.238 1.238 21 C -0.017 4.017 22 C -0.025 4.025 23 H 0.070 0.930 24 H 0.099 0.901 25 H 0.060 0.940 26 H 0.100 0.900 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.148 0.852 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.045 0.955 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 12.195 0.474 -15.266 19.545 hybrid contribution -0.836 0.250 0.174 0.890 sum 11.358 0.723 -15.092 18.903 Atomic orbital electron populations 1.21602 0.93206 1.02009 1.02107 1.21805 0.94104 0.92314 1.01662 1.21462 1.00918 0.91811 1.02948 1.23350 1.03268 0.99692 0.90485 1.21644 0.99327 1.00230 0.95826 1.21487 0.92208 1.02717 1.00577 1.20148 0.79000 0.87241 0.79836 1.90612 1.64217 1.25577 1.66552 1.47984 1.44835 1.18826 1.21003 1.22020 0.90512 0.92187 0.97445 1.21395 0.94539 0.87222 0.95846 1.44345 1.50649 1.17096 1.22062 1.18762 1.34165 0.94264 0.91376 0.93364 1.26075 0.98110 0.99765 0.97956 1.69931 1.51264 1.18872 1.19702 0.85925 0.77996 0.78580 0.80332 1.18151 1.19484 1.23838 1.21989 0.90217 0.93119 0.96355 1.22508 0.97640 0.84298 0.98062 0.92982 0.90072 0.94046 0.89976 0.90962 0.91522 0.85241 0.90009 0.92008 0.88439 0.91318 0.91489 0.89473 0.90792 0.95531 0.92721 0.94242 0.91311 0.91124 0.86731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 8.87 71.98 0.64 -2.74 16 2 C -0.10 -2.07 2.31 -52.16 -0.12 -2.19 16 3 C -0.11 -1.70 8.60 71.98 0.62 -1.08 16 4 C -0.13 -2.73 9.07 30.62 0.28 -2.45 16 5 C -0.17 -4.01 1.36 -52.93 -0.07 -4.08 16 6 C -0.11 -2.05 8.86 71.98 0.64 -1.42 16 7 C 0.55 17.86 5.98 87.65 0.52 18.38 16 8 O -0.59 -23.09 16.16 -3.04 -0.05 -23.14 16 9 N -0.60 -19.79 2.95 -817.14 -2.41 -22.20 16 10 C 0.10 3.59 6.58 86.42 0.57 4.16 16 11 C 0.14 5.36 6.67 86.42 0.58 5.94 16 12 N -0.62 -28.08 2.62 -697.35 -1.83 -29.91 16 13 C -0.26 -14.08 9.97 84.03 0.84 -13.24 16 14 H 0.05 2.94 8.06 -2.91 -0.02 2.91 16 15 C -0.02 -1.30 5.25 84.86 0.45 -0.86 16 16 N -0.95 -58.00 13.97 21.65 0.30 -57.70 16 17 Si 0.94 44.20 24.46 68.60 1.68 45.88 16 18 H -0.26 -10.74 6.57 99.48 0.65 -10.09 16 19 H -0.27 -12.44 6.95 99.48 0.69 -11.75 16 20 H -0.31 -14.91 7.11 99.48 0.71 -14.20 16 21 C 0.11 4.25 4.27 86.57 0.37 4.62 16 22 C 0.10 3.11 5.32 86.57 0.46 3.57 16 23 H 0.05 1.57 4.98 -2.39 -0.01 1.56 16 24 H 0.08 1.74 7.92 -2.39 -0.02 1.72 16 25 H 0.04 1.16 7.90 -2.39 -0.02 1.14 16 26 H 0.08 0.88 7.22 -2.38 -0.02 0.86 16 27 H 0.07 0.99 7.92 -2.39 -0.02 0.97 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.13 1.92 8.05 -2.39 -0.02 1.90 16 30 H 0.08 2.04 7.93 -2.39 -0.02 2.02 16 31 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.10 1.22 6.59 -2.39 -0.02 1.21 16 33 H 0.07 1.27 5.81 -2.39 -0.01 1.25 16 34 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 35 H 0.09 3.02 7.02 -2.39 -0.02 3.00 16 36 H 0.07 2.90 7.93 -2.39 -0.02 2.88 16 37 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 39 H 0.04 1.53 4.71 -2.39 -0.01 1.51 16 40 H 0.07 2.88 5.03 -2.39 -0.01 2.87 16 41 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.11 2.90 4.42 -2.38 -0.01 2.89 16 Total: -1.00 -68.04 314.41 4.39 -63.64 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.94 Total: 14.81 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 5.76 Total: 8.62 kcal Atomic # 7 Polarization: -105.87 SS G_CDS: -3.94 Total: -109.81 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.05 Total: -23.14 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.68 Total: 45.88 kcal Total: -68.04 4.39 -63.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702141082.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.103 kcal (2) G-P(sol) polarization free energy of solvation -68.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds