Wall clock time and date at job start Mon Mar 30 2020 05:39:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53003 * 115.56103 * 2 1
4 4 C 1.53076 * 117.51672 * 214.29857 * 2 1 3
5 5 C 1.53000 * 117.50106 * 145.68680 * 2 1 3
6 6 C 1.52998 * 117.49910 * 215.00467 * 5 2 1
7 7 C 1.50696 * 117.49922 * 0.02562 * 5 2 1
8 8 O 1.21283 * 120.00367 * 101.57696 * 7 5 2
9 9 N 1.34784 * 119.99791 * 281.57859 * 7 5 2
10 10 C 1.46957 * 120.59375 * 175.85536 * 9 7 5
11 11 C 1.53371 * 108.63802 * 235.24968 * 10 9 7
12 12 N 1.46965 * 108.63162 * 310.57612 * 11 10 9
13 13 C 1.36937 * 120.59482 * 235.19853 * 12 11 10
14 14 H 1.08003 * 119.99928 * 35.35081 * 13 12 11
15 15 C 1.38809 * 120.00024 * 215.34989 * 13 12 11
16 16 N 1.31622 * 119.99976 * 196.65967 * 15 13 12
17 17 Si 1.86798 * 120.00018 * 16.94000 * 15 13 12
18 18 H 1.48501 * 109.47271 * 271.74564 * 17 15 13
19 19 H 1.48503 * 109.47316 * 31.74962 * 17 15 13
20 20 H 1.48502 * 109.47117 * 151.74891 * 17 15 13
21 21 C 1.46962 * 118.81180 * 55.48336 * 12 11 10
22 22 C 1.46963 * 120.59091 * 355.88287 * 9 7 5
23 23 H 1.09001 * 109.46990 * 274.30813 * 1 2 3
24 24 H 1.08995 * 109.47096 * 34.30933 * 1 2 3
25 25 H 1.08997 * 109.46907 * 154.31231 * 1 2 3
26 26 H 1.09005 * 109.47210 * 205.68868 * 3 2 1
27 27 H 1.09003 * 109.47107 * 325.69149 * 3 2 1
28 28 H 1.09003 * 109.47191 * 85.68968 * 3 2 1
29 29 H 1.08998 * 117.49399 * 145.03762 * 4 2 1
30 30 H 1.08994 * 117.50888 * 359.97438 * 4 2 1
31 31 H 1.09008 * 109.47094 * 209.53534 * 6 5 2
32 32 H 1.08999 * 109.47236 * 329.53086 * 6 5 2
33 33 H 1.09001 * 109.47625 * 89.53677 * 6 5 2
34 34 H 1.09009 * 109.60626 * 115.50285 * 10 9 7
35 35 H 1.09000 * 109.75359 * 355.08140 * 10 9 7
36 36 H 1.08999 * 109.61025 * 190.83899 * 11 10 9
37 37 H 1.08993 * 109.60604 * 70.32231 * 11 10 9
38 38 H 0.97000 * 119.99804 * 179.97438 * 16 15 13
39 39 H 1.08996 * 109.61466 * 64.25925 * 21 12 11
40 40 H 1.09003 * 109.61277 * 184.77544 * 21 12 11
41 41 H 1.09001 * 109.60807 * 244.49448 * 22 9 7
42 42 H 1.09005 * 109.61382 * 4.83533 * 22 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.1901 1.3803 0.0000
4 6 2.2372 -1.1215 -0.7650
5 6 2.2365 -1.1209 0.7650
6 6 3.5487 -0.7757 1.4719
7 6 1.3721 -2.1409 1.4604
8 8 1.1973 -3.2310 0.9585
9 7 0.7932 -1.8416 2.6402
10 6 -0.1241 -2.7912 3.2855
11 6 -1.4576 -2.0813 3.5507
12 7 -1.1830 -0.7993 4.2147
13 6 -1.7719 -0.4947 5.4129
14 1 -1.9470 -1.2724 6.1416
15 6 -2.1439 0.8134 5.6908
16 7 -2.3992 1.1758 6.9301
17 14 -2.2896 2.0575 4.3050
18 1 -0.9718 2.7036 4.0792
19 1 -2.7218 1.3670 3.0633
20 1 -3.2913 3.0909 4.6709
21 6 -0.2701 0.1528 3.5666
22 6 1.0677 -0.5595 3.3041
23 1 -0.3633 0.0772 1.0248
24 1 -0.3633 0.8488 -0.5792
25 1 -0.3633 -0.9261 -0.4454
26 1 3.1824 1.3085 -0.4455
27 1 1.5811 2.0743 -0.5793
28 1 2.2772 1.7414 1.0248
29 1 3.1724 -0.8756 -1.2679
30 1 1.6124 -1.8596 -1.2679
31 1 4.1844 -1.6604 1.5104
32 1 4.0598 0.0153 0.9232
33 1 3.3369 -0.4362 2.4858
34 1 0.3041 -3.1299 4.2290
35 1 -0.2891 -3.6468 2.6307
36 1 -2.0801 -2.7013 4.1958
37 1 -1.9705 -1.9016 2.6060
38 1 -2.6587 2.0900 7.1244
39 1 -0.7005 0.4879 2.6230
40 1 -0.1082 1.0085 4.2221
41 1 1.5807 -0.7392 4.2488
42 1 1.6928 0.0594 2.6603
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000702141082.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:39:58
Heat of formation + Delta-G solvation = -1.540711 kcal
Electronic energy + Delta-G solvation = -22174.155926 eV
Core-core repulsion = 19155.104098 eV
Total energy + Delta-G solvation = -3019.051828 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-41.80435 -39.23183 -38.29839 -35.64860 -33.57289 -32.41096 -31.56240 -29.15031
-28.81136 -27.94330 -25.73880 -24.80299 -23.77135 -21.76845 -20.72198 -19.67259
-18.46699 -17.66228 -16.98877 -16.80640 -16.51053 -16.09096 -15.62623 -15.49897
-15.23896 -14.74702 -14.54493 -14.26106 -14.14204 -13.92738 -13.70818 -13.43938
-13.30016 -13.16607 -12.92962 -12.76336 -12.63400 -12.46739 -12.25807 -12.11551
-12.05932 -11.78027 -11.66469 -11.03614 -10.84830 -10.77623 -10.34673 -9.89863
-8.77765 -8.19121 -5.61475 1.28555 1.41977 1.50271 1.52672 1.92259
2.39620 2.62681 3.06652 3.25427 3.39858 3.60131 3.73468 3.92046
4.05256 4.08910 4.10550 4.27270 4.30114 4.48485 4.50722 4.60409
4.62109 4.70199 4.78496 4.81139 4.84419 4.88781 4.89114 4.91405
5.00635 5.04008 5.06982 5.12730 5.27430 5.33442 5.45488 5.48801
5.87797 6.12293 6.42810 6.87234 7.12291 7.54498 7.98654 9.00336
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.022952 B = 0.007438 C = 0.006419
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1219.622229 B = 3763.750494 C = 4361.118095
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.098 4.098
3 C -0.115 4.115
4 C -0.131 4.131
5 C -0.167 4.167
6 C -0.113 4.113
7 C 0.548 3.452
8 O -0.588 6.588
9 N -0.596 5.596
10 C 0.102 3.898
11 C 0.136 3.864
12 N -0.617 5.617
13 C -0.256 4.256
14 H 0.049 0.951
15 C -0.023 4.023
16 N -0.953 5.953
17 Si 0.944 3.056
18 H -0.256 1.256
19 H -0.270 1.270
20 H -0.310 1.310
21 C 0.108 3.892
22 C 0.099 3.901
23 H 0.051 0.949
24 H 0.080 0.920
25 H 0.040 0.960
26 H 0.081 0.919
27 H 0.071 0.929
28 H 0.066 0.934
29 H 0.130 0.870
30 H 0.081 0.919
31 H 0.061 0.939
32 H 0.097 0.903
33 H 0.068 0.932
34 H 0.067 0.933
35 H 0.087 0.913
36 H 0.074 0.926
37 H 0.027 0.973
38 H 0.264 0.736
39 H 0.040 0.960
40 H 0.069 0.931
41 H 0.070 0.930
42 H 0.115 0.885
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.351 0.934 -15.143 19.563
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.099 4.099
3 C -0.171 4.171
4 C -0.168 4.168
5 C -0.170 4.170
6 C -0.170 4.170
7 C 0.338 3.662
8 O -0.470 6.470
9 N -0.326 5.326
10 C -0.022 4.022
11 C 0.010 3.990
12 N -0.342 5.342
13 C -0.386 4.386
14 H 0.066 0.934
15 C -0.219 4.219
16 N -0.598 5.598
17 Si 0.772 3.228
18 H -0.182 1.182
19 H -0.195 1.195
20 H -0.238 1.238
21 C -0.017 4.017
22 C -0.025 4.025
23 H 0.070 0.930
24 H 0.099 0.901
25 H 0.060 0.940
26 H 0.100 0.900
27 H 0.090 0.910
28 H 0.085 0.915
29 H 0.148 0.852
30 H 0.100 0.900
31 H 0.080 0.920
32 H 0.116 0.884
33 H 0.087 0.913
34 H 0.085 0.915
35 H 0.105 0.895
36 H 0.092 0.908
37 H 0.045 0.955
38 H 0.073 0.927
39 H 0.058 0.942
40 H 0.087 0.913
41 H 0.089 0.911
42 H 0.133 0.867
Dipole moment (debyes) X Y Z Total
from point charges 12.195 0.474 -15.266 19.545
hybrid contribution -0.836 0.250 0.174 0.890
sum 11.358 0.723 -15.092 18.903
Atomic orbital electron populations
1.21602 0.93206 1.02009 1.02107 1.21805 0.94104 0.92314 1.01662
1.21462 1.00918 0.91811 1.02948 1.23350 1.03268 0.99692 0.90485
1.21644 0.99327 1.00230 0.95826 1.21487 0.92208 1.02717 1.00577
1.20148 0.79000 0.87241 0.79836 1.90612 1.64217 1.25577 1.66552
1.47984 1.44835 1.18826 1.21003 1.22020 0.90512 0.92187 0.97445
1.21395 0.94539 0.87222 0.95846 1.44345 1.50649 1.17096 1.22062
1.18762 1.34165 0.94264 0.91376 0.93364 1.26075 0.98110 0.99765
0.97956 1.69931 1.51264 1.18872 1.19702 0.85925 0.77996 0.78580
0.80332 1.18151 1.19484 1.23838 1.21989 0.90217 0.93119 0.96355
1.22508 0.97640 0.84298 0.98062 0.92982 0.90072 0.94046 0.89976
0.90962 0.91522 0.85241 0.90009 0.92008 0.88439 0.91318 0.91489
0.89473 0.90792 0.95531 0.92721 0.94242 0.91311 0.91124 0.86731
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.38 8.87 71.98 0.64 -2.74 16
2 C -0.10 -2.07 2.31 -52.16 -0.12 -2.19 16
3 C -0.11 -1.70 8.60 71.98 0.62 -1.08 16
4 C -0.13 -2.73 9.07 30.62 0.28 -2.45 16
5 C -0.17 -4.01 1.36 -52.93 -0.07 -4.08 16
6 C -0.11 -2.05 8.86 71.98 0.64 -1.42 16
7 C 0.55 17.86 5.98 87.65 0.52 18.38 16
8 O -0.59 -23.09 16.16 -3.04 -0.05 -23.14 16
9 N -0.60 -19.79 2.95 -817.14 -2.41 -22.20 16
10 C 0.10 3.59 6.58 86.42 0.57 4.16 16
11 C 0.14 5.36 6.67 86.42 0.58 5.94 16
12 N -0.62 -28.08 2.62 -697.35 -1.83 -29.91 16
13 C -0.26 -14.08 9.97 84.03 0.84 -13.24 16
14 H 0.05 2.94 8.06 -2.91 -0.02 2.91 16
15 C -0.02 -1.30 5.25 84.86 0.45 -0.86 16
16 N -0.95 -58.00 13.97 21.65 0.30 -57.70 16
17 Si 0.94 44.20 24.46 68.60 1.68 45.88 16
18 H -0.26 -10.74 6.57 99.48 0.65 -10.09 16
19 H -0.27 -12.44 6.95 99.48 0.69 -11.75 16
20 H -0.31 -14.91 7.11 99.48 0.71 -14.20 16
21 C 0.11 4.25 4.27 86.57 0.37 4.62 16
22 C 0.10 3.11 5.32 86.57 0.46 3.57 16
23 H 0.05 1.57 4.98 -2.39 -0.01 1.56 16
24 H 0.08 1.74 7.92 -2.39 -0.02 1.72 16
25 H 0.04 1.16 7.90 -2.39 -0.02 1.14 16
26 H 0.08 0.88 7.22 -2.38 -0.02 0.86 16
27 H 0.07 0.99 7.92 -2.39 -0.02 0.97 16
28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16
29 H 0.13 1.92 8.05 -2.39 -0.02 1.90 16
30 H 0.08 2.04 7.93 -2.39 -0.02 2.02 16
31 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16
32 H 0.10 1.22 6.59 -2.39 -0.02 1.21 16
33 H 0.07 1.27 5.81 -2.39 -0.01 1.25 16
34 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16
35 H 0.09 3.02 7.02 -2.39 -0.02 3.00 16
36 H 0.07 2.90 7.93 -2.39 -0.02 2.88 16
37 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16
38 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16
39 H 0.04 1.53 4.71 -2.39 -0.01 1.51 16
40 H 0.07 2.88 5.03 -2.39 -0.01 2.87 16
41 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16
42 H 0.11 2.90 4.42 -2.38 -0.01 2.89 16
Total: -1.00 -68.04 314.41 4.39 -63.64
By element:
Atomic # 1 Polarization: 13.87 SS G_CDS: 0.94 Total: 14.81 kcal
Atomic # 6 Polarization: 2.85 SS G_CDS: 5.76 Total: 8.62 kcal
Atomic # 7 Polarization: -105.87 SS G_CDS: -3.94 Total: -109.81 kcal
Atomic # 8 Polarization: -23.09 SS G_CDS: -0.05 Total: -23.14 kcal
Atomic # 14 Polarization: 44.20 SS G_CDS: 1.68 Total: 45.88 kcal
Total: -68.04 4.39 -63.64 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000702141082.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.103 kcal
(2) G-P(sol) polarization free energy of solvation -68.038 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.936 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.395 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.643 kcal
(6) G-S(sol) free energy of system = (1) + (5) -1.541 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds