Wall clock time and date at job start Mon Mar 30 2020 05:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 115.54802 * 2 1 4 4 C 1.53001 * 117.50112 * 214.28809 * 2 1 3 5 5 C 1.53000 * 60.00014 * 252.51384 * 4 2 1 6 6 C 1.53000 * 117.49944 * 107.48943 * 5 4 2 7 7 C 1.50700 * 117.51950 * 252.51704 * 5 4 2 8 8 O 1.21286 * 119.99894 * 329.26675 * 7 5 4 9 9 N 1.34777 * 120.00317 * 149.25920 * 7 5 4 10 10 C 1.46963 * 120.59702 * 184.60788 * 9 7 5 11 11 C 1.53812 * 108.39848 * 124.75826 * 10 9 7 12 12 N 1.46966 * 108.57557 * 49.64098 * 11 10 9 13 13 C 1.36937 * 120.59303 * 124.62583 * 12 11 10 14 14 H 1.08001 * 120.00171 * 206.81982 * 13 12 11 15 15 C 1.38813 * 120.00061 * 26.81234 * 13 12 11 16 16 N 1.31619 * 119.99899 * 16.46670 * 15 13 12 17 17 Si 1.86803 * 120.00083 * 196.45656 * 15 13 12 18 18 H 1.48506 * 109.46727 * 90.00601 * 17 15 13 19 19 H 1.48496 * 109.47102 * 210.00246 * 17 15 13 20 20 H 1.48493 * 109.47169 * 330.00702 * 17 15 13 21 21 C 1.46958 * 118.81362 * 304.64142 * 12 11 10 22 22 C 1.46966 * 120.59158 * 4.89335 * 9 7 5 23 23 H 1.08994 * 109.47534 * 274.33211 * 1 2 3 24 24 H 1.09000 * 109.46872 * 34.33488 * 1 2 3 25 25 H 1.08998 * 109.46950 * 154.33267 * 1 2 3 26 26 H 1.09007 * 109.46570 * 205.66762 * 3 2 1 27 27 H 1.08999 * 109.47316 * 325.66437 * 3 2 1 28 28 H 1.08995 * 109.47259 * 85.67176 * 3 2 1 29 29 H 1.08993 * 117.50063 * 145.02360 * 4 2 1 30 30 H 1.08996 * 117.49698 * 0.02562 * 4 2 1 31 31 H 1.08996 * 109.47410 * 348.07876 * 6 5 4 32 32 H 1.08997 * 109.47208 * 108.08386 * 6 5 4 33 33 H 1.09009 * 109.47225 * 228.07949 * 6 5 4 34 34 H 1.08998 * 109.61213 * 244.54500 * 10 9 7 35 35 H 1.09001 * 109.60786 * 5.05567 * 10 9 7 36 36 H 1.08996 * 109.74312 * 289.84682 * 11 10 9 37 37 H 1.09004 * 109.52780 * 169.30099 * 11 10 9 38 38 H 0.97004 * 119.99676 * 180.02562 * 16 15 13 39 39 H 1.09004 * 109.60930 * 295.48607 * 21 12 11 40 40 H 1.09000 * 109.61314 * 174.97616 * 21 12 11 41 41 H 1.09004 * 109.60962 * 354.93701 * 22 9 7 42 42 H 1.08990 * 109.61583 * 115.28690 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2365 -1.1213 -0.7645 5 6 2.2364 -1.1207 0.7655 6 6 1.3588 -2.1556 1.4722 7 6 3.5289 -0.7805 1.4617 8 8 4.5890 -1.0569 0.9414 9 7 3.5068 -0.1689 2.6626 10 6 4.7563 0.2594 3.3070 11 6 4.6503 1.7613 3.6213 12 7 3.3767 2.0062 4.3127 13 6 3.3543 2.6267 5.5332 14 1 2.5450 2.4345 6.2219 15 6 4.3720 3.5027 5.8852 16 7 5.1708 3.9896 4.9594 17 14 4.6076 3.9906 7.6729 18 1 5.5394 3.0374 8.3275 19 1 5.1734 5.3619 7.7413 20 1 3.2973 3.9604 8.3711 21 6 2.1277 1.5729 3.6709 22 6 2.2333 0.0759 3.3539 23 1 -0.3634 0.0776 1.0246 24 1 -0.3633 0.8486 -0.5796 25 1 -0.3633 -0.9262 -0.4451 26 1 3.1823 1.3087 -0.4452 27 1 1.5810 2.0742 -0.5796 28 1 2.2766 1.7417 1.0247 29 1 3.1716 -0.8757 -1.2678 30 1 1.6113 -1.8587 -1.2679 31 1 0.6882 -2.6186 0.7483 32 1 1.9907 -2.9207 1.9233 33 1 0.7720 -1.6648 2.2489 34 1 4.9025 -0.3010 4.2304 35 1 5.5945 0.0835 2.6328 36 1 4.6797 2.3344 2.6947 37 1 5.4787 2.0583 4.2645 38 1 5.8821 4.6015 5.2055 39 1 1.9774 2.1326 2.7477 40 1 1.2901 1.7455 4.3467 41 1 1.4049 -0.2210 2.7107 42 1 2.2026 -0.4994 4.2790 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702141085.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:03 Heat of formation + Delta-G solvation = 15.182189 kcal Electronic energy + Delta-G solvation = -21949.659594 eV Core-core repulsion = 18931.332925 eV Total energy + Delta-G solvation = -3018.326668 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.41359 -37.73641 -36.57747 -33.85865 -31.21892 -30.88101 -30.00645 -28.12021 -27.01315 -26.80646 -24.06461 -23.01001 -22.06153 -20.25070 -19.30353 -18.08835 -16.69872 -15.89181 -15.49185 -15.24073 -14.80873 -14.26417 -14.02467 -13.81356 -13.55143 -13.32948 -13.24508 -13.08797 -12.63512 -12.39715 -12.23030 -12.07071 -11.99559 -11.69123 -11.48018 -11.19140 -11.12678 -10.80971 -10.70216 -10.51467 -10.22646 -9.95866 -9.92575 -9.81992 -9.61758 -9.08481 -8.58768 -8.18759 -6.72045 -5.84188 -3.29166 2.96940 3.34475 3.39335 3.42139 3.43000 3.76603 4.43535 4.58734 4.67550 4.79846 4.99888 5.07735 5.25277 5.32841 5.48851 5.58656 5.68261 5.69681 5.77679 5.78537 5.81742 5.85141 5.91277 5.96960 6.05338 6.06212 6.13035 6.21923 6.22697 6.37269 6.40288 6.41634 6.52796 6.80417 6.94656 7.28339 7.58399 7.71449 7.98599 8.35833 8.65326 9.12192 9.75079 10.30768 11.22665 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031261 B = 0.005575 C = 0.005378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.481344 B = 5021.655242 C = 5204.768855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.103 4.103 3 C -0.128 4.128 4 C -0.142 4.142 5 C -0.151 4.151 6 C -0.111 4.111 7 C 0.548 3.452 8 O -0.557 6.557 9 N -0.589 5.589 10 C 0.085 3.915 11 C 0.158 3.842 12 N -0.591 5.591 13 C -0.255 4.255 14 H 0.068 0.932 15 C 0.002 3.998 16 N -0.903 5.903 17 Si 0.905 3.095 18 H -0.287 1.287 19 H -0.291 1.291 20 H -0.279 1.279 21 C 0.130 3.870 22 C 0.085 3.915 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.022 0.978 37 H 0.104 0.896 38 H 0.255 0.745 39 H 0.027 0.973 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.359 -8.974 -7.904 15.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.103 4.103 3 C -0.184 4.184 4 C -0.179 4.179 5 C -0.155 4.155 6 C -0.168 4.168 7 C 0.335 3.665 8 O -0.436 6.436 9 N -0.320 5.320 10 C -0.038 4.038 11 C 0.032 3.968 12 N -0.314 5.314 13 C -0.384 4.384 14 H 0.086 0.914 15 C -0.197 4.197 16 N -0.547 5.547 17 Si 0.735 3.265 18 H -0.214 1.214 19 H -0.217 1.217 20 H -0.204 1.204 21 C 0.003 3.997 22 C -0.040 4.040 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.040 0.960 37 H 0.122 0.878 38 H 0.065 0.935 39 H 0.045 0.955 40 H 0.082 0.918 41 H 0.100 0.900 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.663 -8.959 -8.109 14.868 hybrid contribution 0.228 0.277 0.988 1.051 sum -8.435 -8.682 -7.120 14.044 Atomic orbital electron populations 1.21361 0.91613 1.01858 1.02189 1.21671 0.94798 0.91344 1.02493 1.21553 0.99878 0.93473 1.03541 1.23295 1.02422 1.00586 0.91593 1.21562 0.96939 1.02087 0.94871 1.21418 0.98294 0.96944 1.00155 1.19453 0.89069 0.77108 0.80876 1.90631 1.32119 1.54819 1.66046 1.47957 1.08653 1.56875 1.18551 1.22628 0.85305 0.99509 0.96349 1.21327 0.90999 0.88038 0.96462 1.44004 0.99604 1.67836 1.19928 1.19221 1.09287 1.18937 0.90944 0.91428 1.25047 1.00128 0.96691 0.97786 1.69999 1.20926 1.32707 1.31061 0.86246 0.78026 0.77500 0.84715 1.21386 1.21731 1.20430 1.21355 0.90909 0.90953 0.96508 1.22544 0.85108 0.99835 0.96505 0.91846 0.91863 0.92438 0.92478 0.91973 0.90665 0.88163 0.88387 0.91770 0.92052 0.91161 0.92301 0.90336 0.95991 0.87824 0.93457 0.95545 0.91753 0.90021 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 8.87 37.16 0.33 -0.76 16 2 C -0.10 -1.28 2.47 -154.51 -0.38 -1.66 16 3 C -0.13 -1.83 8.87 37.16 0.33 -1.50 16 4 C -0.14 -1.79 8.99 -26.73 -0.24 -2.03 16 5 C -0.15 -2.11 1.40 -155.66 -0.22 -2.33 16 6 C -0.11 -1.24 8.20 37.16 0.30 -0.94 16 7 C 0.55 9.99 5.99 -10.99 -0.07 9.92 16 8 O -0.56 -12.03 16.11 5.55 0.09 -11.94 16 9 N -0.59 -10.93 2.94 -172.21 -0.51 -11.44 16 10 C 0.09 1.77 6.61 -3.37 -0.02 1.75 16 11 C 0.16 3.77 5.54 -3.37 -0.02 3.76 16 12 N -0.59 -14.27 2.97 -171.76 -0.51 -14.78 16 13 C -0.25 -6.72 9.60 -15.06 -0.14 -6.87 16 14 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 15 C 0.00 0.06 4.95 -17.43 -0.09 -0.03 16 16 N -0.90 -25.66 11.03 55.49 0.61 -25.05 16 17 Si 0.91 21.20 29.58 -169.99 -5.03 16.18 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 C 0.13 2.54 6.60 -3.60 -0.02 2.52 16 22 C 0.08 1.40 5.96 -3.59 -0.02 1.38 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.57 7.92 -51.93 -0.41 0.15 16 25 H 0.06 0.47 7.64 -51.93 -0.40 0.08 16 26 H 0.06 0.90 7.90 -51.92 -0.41 0.49 16 27 H 0.06 0.76 7.92 -51.93 -0.41 0.35 16 28 H 0.07 1.25 5.67 -51.93 -0.29 0.95 16 29 H 0.10 1.43 7.90 -51.93 -0.41 1.02 16 30 H 0.10 1.00 7.98 -51.93 -0.41 0.59 16 31 H 0.06 0.58 7.64 -51.93 -0.40 0.19 16 32 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 33 H 0.07 0.72 6.05 -51.92 -0.31 0.41 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.08 1.65 7.02 -51.93 -0.36 1.28 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.10 2.75 5.84 -51.93 -0.30 2.44 16 38 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 39 H 0.03 0.53 5.91 -51.93 -0.31 0.22 16 40 H 0.06 1.20 7.93 -51.93 -0.41 0.78 16 41 H 0.08 1.12 4.01 -51.93 -0.21 0.92 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 322.19 15.07 4.86 4.86 Total: -1.00 -30.44 322.19 -7.46 -37.90 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -6.71 Total: 1.07 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -0.26 Total: 3.21 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: -0.41 Total: -51.27 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.09 Total: -11.94 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.44 -7.46 -37.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702141085.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.082 kcal (2) G-P(sol) polarization free energy of solvation -30.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds