Wall clock time and date at job start Mon Mar 30 2020 05:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 115.54802 * 2 1 4 4 C 1.53001 * 117.50112 * 214.28809 * 2 1 3 5 5 C 1.53000 * 60.00014 * 252.51384 * 4 2 1 6 6 C 1.53000 * 117.49944 * 107.48943 * 5 4 2 7 7 C 1.50700 * 117.51950 * 252.51704 * 5 4 2 8 8 O 1.21286 * 119.99894 * 329.26675 * 7 5 4 9 9 N 1.34777 * 120.00317 * 149.25920 * 7 5 4 10 10 C 1.46963 * 120.59702 * 184.60788 * 9 7 5 11 11 C 1.53812 * 108.39848 * 124.75826 * 10 9 7 12 12 N 1.46966 * 108.57557 * 49.64098 * 11 10 9 13 13 C 1.36937 * 120.59303 * 124.62583 * 12 11 10 14 14 H 1.08001 * 120.00171 * 206.81982 * 13 12 11 15 15 C 1.38813 * 120.00061 * 26.81234 * 13 12 11 16 16 N 1.31619 * 119.99899 * 16.46670 * 15 13 12 17 17 Si 1.86803 * 120.00083 * 196.45656 * 15 13 12 18 18 H 1.48506 * 109.46727 * 90.00601 * 17 15 13 19 19 H 1.48496 * 109.47102 * 210.00246 * 17 15 13 20 20 H 1.48493 * 109.47169 * 330.00702 * 17 15 13 21 21 C 1.46958 * 118.81362 * 304.64142 * 12 11 10 22 22 C 1.46966 * 120.59158 * 4.89335 * 9 7 5 23 23 H 1.08994 * 109.47534 * 274.33211 * 1 2 3 24 24 H 1.09000 * 109.46872 * 34.33488 * 1 2 3 25 25 H 1.08998 * 109.46950 * 154.33267 * 1 2 3 26 26 H 1.09007 * 109.46570 * 205.66762 * 3 2 1 27 27 H 1.08999 * 109.47316 * 325.66437 * 3 2 1 28 28 H 1.08995 * 109.47259 * 85.67176 * 3 2 1 29 29 H 1.08993 * 117.50063 * 145.02360 * 4 2 1 30 30 H 1.08996 * 117.49698 * 0.02562 * 4 2 1 31 31 H 1.08996 * 109.47410 * 348.07876 * 6 5 4 32 32 H 1.08997 * 109.47208 * 108.08386 * 6 5 4 33 33 H 1.09009 * 109.47225 * 228.07949 * 6 5 4 34 34 H 1.08998 * 109.61213 * 244.54500 * 10 9 7 35 35 H 1.09001 * 109.60786 * 5.05567 * 10 9 7 36 36 H 1.08996 * 109.74312 * 289.84682 * 11 10 9 37 37 H 1.09004 * 109.52780 * 169.30099 * 11 10 9 38 38 H 0.97004 * 119.99676 * 180.02562 * 16 15 13 39 39 H 1.09004 * 109.60930 * 295.48607 * 21 12 11 40 40 H 1.09000 * 109.61314 * 174.97616 * 21 12 11 41 41 H 1.09004 * 109.60962 * 354.93701 * 22 9 7 42 42 H 1.08990 * 109.61583 * 115.28690 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2365 -1.1213 -0.7645 5 6 2.2364 -1.1207 0.7655 6 6 1.3588 -2.1556 1.4722 7 6 3.5289 -0.7805 1.4617 8 8 4.5890 -1.0569 0.9414 9 7 3.5068 -0.1689 2.6626 10 6 4.7563 0.2594 3.3070 11 6 4.6503 1.7613 3.6213 12 7 3.3767 2.0062 4.3127 13 6 3.3543 2.6267 5.5332 14 1 2.5450 2.4345 6.2219 15 6 4.3720 3.5027 5.8852 16 7 5.1708 3.9896 4.9594 17 14 4.6076 3.9906 7.6729 18 1 5.5394 3.0374 8.3275 19 1 5.1734 5.3619 7.7413 20 1 3.2973 3.9604 8.3711 21 6 2.1277 1.5729 3.6709 22 6 2.2333 0.0759 3.3539 23 1 -0.3634 0.0776 1.0246 24 1 -0.3633 0.8486 -0.5796 25 1 -0.3633 -0.9262 -0.4451 26 1 3.1823 1.3087 -0.4452 27 1 1.5810 2.0742 -0.5796 28 1 2.2766 1.7417 1.0247 29 1 3.1716 -0.8757 -1.2678 30 1 1.6113 -1.8587 -1.2679 31 1 0.6882 -2.6186 0.7483 32 1 1.9907 -2.9207 1.9233 33 1 0.7720 -1.6648 2.2489 34 1 4.9025 -0.3010 4.2304 35 1 5.5945 0.0835 2.6328 36 1 4.6797 2.3344 2.6947 37 1 5.4787 2.0583 4.2645 38 1 5.8821 4.6015 5.2055 39 1 1.9774 2.1326 2.7477 40 1 1.2901 1.7455 4.3467 41 1 1.4049 -0.2210 2.7107 42 1 2.2026 -0.4994 4.2790 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702141085.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:02 Heat of formation + Delta-G solvation = -2.885739 kcal Electronic energy + Delta-G solvation = -21950.443078 eV Core-core repulsion = 18931.332925 eV Total energy + Delta-G solvation = -3019.110153 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.72577 -39.10451 -38.16986 -35.64319 -33.07971 -32.26842 -31.36845 -29.02699 -28.65316 -27.91240 -25.80519 -24.63223 -23.56430 -21.65940 -20.64813 -19.58999 -18.38749 -17.40832 -16.90464 -16.67790 -16.52158 -15.61286 -15.46488 -15.33990 -15.09550 -15.04229 -14.54899 -14.17299 -13.91069 -13.66704 -13.35996 -13.28553 -13.15536 -12.99861 -12.92706 -12.63831 -12.53697 -12.47746 -12.20881 -12.10965 -11.98976 -11.82459 -11.66100 -10.99663 -10.77151 -10.61599 -10.33045 -9.83082 -8.67485 -7.87951 -5.36266 1.47826 1.49969 1.57290 1.58301 2.00088 2.50608 2.67506 3.26532 3.45543 3.58929 3.63829 3.76548 3.96021 4.13868 4.22326 4.25072 4.35860 4.45731 4.54866 4.62912 4.71543 4.73659 4.78317 4.86719 4.89444 4.92767 4.95937 4.99335 5.08696 5.09155 5.12673 5.22806 5.30130 5.38788 5.47507 5.50722 5.60669 5.68817 6.34330 6.52420 7.08647 7.18240 7.78827 8.31428 9.16977 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031261 B = 0.005575 C = 0.005378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.481344 B = 5021.655242 C = 5204.768855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.092 4.092 3 C -0.127 4.127 4 C -0.138 4.138 5 C -0.164 4.164 6 C -0.107 4.107 7 C 0.542 3.458 8 O -0.599 6.599 9 N -0.593 5.593 10 C 0.099 3.901 11 C 0.172 3.828 12 N -0.607 5.607 13 C -0.259 4.259 14 H 0.077 0.923 15 C -0.053 4.053 16 N -0.938 5.938 17 Si 0.970 3.030 18 H -0.287 1.287 19 H -0.299 1.299 20 H -0.264 1.264 21 C 0.126 3.874 22 C 0.096 3.904 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.029 0.971 27 H 0.082 0.918 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.133 0.867 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.068 0.932 36 H -0.009 1.009 37 H 0.074 0.926 38 H 0.250 0.750 39 H 0.023 0.977 40 H 0.079 0.921 41 H 0.118 0.882 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.586 -10.586 -7.897 18.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.092 4.092 3 C -0.184 4.184 4 C -0.175 4.175 5 C -0.167 4.167 6 C -0.163 4.163 7 C 0.332 3.668 8 O -0.481 6.481 9 N -0.324 5.324 10 C -0.025 4.025 11 C 0.046 3.954 12 N -0.331 5.331 13 C -0.389 4.389 14 H 0.095 0.905 15 C -0.248 4.248 16 N -0.585 5.585 17 Si 0.798 3.202 18 H -0.214 1.214 19 H -0.226 1.226 20 H -0.189 1.189 21 C 0.000 4.000 22 C -0.028 4.028 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.099 0.901 26 H 0.049 0.951 27 H 0.101 0.899 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.151 0.849 31 H 0.113 0.887 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.009 0.991 37 H 0.092 0.908 38 H 0.059 0.941 39 H 0.041 0.959 40 H 0.097 0.903 41 H 0.136 0.864 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.946 -10.594 -8.101 17.904 hybrid contribution 1.248 0.808 0.908 1.742 sum -10.698 -9.787 -7.193 16.185 Atomic orbital electron populations 1.21416 0.88502 1.03565 1.03201 1.21762 0.96706 0.89522 1.01231 1.21520 0.99257 0.95678 1.01969 1.23393 1.02010 1.01396 0.90688 1.21629 0.95387 1.04107 0.95530 1.21461 0.98019 0.95880 1.00980 1.20316 0.90416 0.75883 0.80234 1.90604 1.34281 1.56384 1.66806 1.48027 1.08430 1.56879 1.19031 1.22226 0.86610 0.97198 0.96511 1.20963 0.90551 0.89672 0.94261 1.44235 1.01003 1.67947 1.19876 1.19605 1.09169 1.18164 0.91955 0.90509 1.25817 1.00288 0.97278 1.01375 1.70168 1.21643 1.33757 1.32917 0.85224 0.78249 0.76404 0.80305 1.21416 1.22557 1.18873 1.21557 0.89331 0.92799 0.96308 1.22563 0.85164 0.97513 0.97511 0.91014 0.91039 0.90096 0.95132 0.89928 0.93110 0.90662 0.84941 0.88690 0.92923 0.89937 0.91868 0.91325 0.99095 0.90832 0.94110 0.95885 0.90291 0.86420 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 8.87 71.98 0.64 -0.95 16 2 C -0.09 -2.03 2.47 -52.18 -0.13 -2.16 16 3 C -0.13 -3.57 8.87 71.98 0.64 -2.93 16 4 C -0.14 -3.15 8.99 30.59 0.28 -2.87 16 5 C -0.16 -4.17 1.40 -52.93 -0.07 -4.24 16 6 C -0.11 -1.93 8.20 71.98 0.59 -1.34 16 7 C 0.54 19.62 5.99 87.66 0.52 20.14 16 8 O -0.60 -26.55 16.11 -3.05 -0.05 -26.60 16 9 N -0.59 -21.86 2.94 -817.14 -2.40 -24.27 16 10 C 0.10 4.23 6.61 86.56 0.57 4.80 16 11 C 0.17 8.62 5.54 86.56 0.48 9.10 16 12 N -0.61 -29.63 2.97 -697.34 -2.07 -31.71 16 13 C -0.26 -13.68 9.60 84.03 0.81 -12.87 16 14 H 0.08 3.85 7.88 -2.91 -0.02 3.83 16 15 C -0.05 -2.88 4.95 84.86 0.42 -2.46 16 16 N -0.94 -55.31 11.03 21.65 0.24 -55.07 16 17 Si 0.97 44.00 29.58 68.60 2.03 46.03 16 18 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 20 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 21 C 0.13 4.78 6.60 86.42 0.57 5.35 16 22 C 0.10 2.97 5.96 86.42 0.52 3.49 16 23 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.07 0.95 7.92 -2.39 -0.02 0.94 16 25 H 0.08 0.84 7.64 -2.39 -0.02 0.82 16 26 H 0.03 0.98 7.90 -2.38 -0.02 0.97 16 27 H 0.08 1.92 7.92 -2.39 -0.02 1.90 16 28 H 0.05 1.68 5.67 -2.39 -0.01 1.66 16 29 H 0.07 2.12 7.90 -2.39 -0.02 2.10 16 30 H 0.13 2.11 7.98 -2.39 -0.02 2.09 16 31 H 0.09 1.18 7.64 -2.39 -0.02 1.16 16 32 H 0.05 1.06 8.11 -2.39 -0.02 1.04 16 33 H 0.08 1.28 6.05 -2.38 -0.01 1.26 16 34 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.07 3.04 7.02 -2.39 -0.02 3.02 16 36 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 37 H 0.07 4.13 5.84 -2.39 -0.01 4.11 16 38 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 39 H 0.02 0.91 5.91 -2.38 -0.01 0.90 16 40 H 0.08 2.76 7.93 -2.39 -0.02 2.74 16 41 H 0.12 2.81 4.01 -2.39 -0.01 2.80 16 42 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -68.94 322.19 4.57 -64.37 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 1.00 Total: 14.17 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: 5.83 Total: 13.06 kcal Atomic # 7 Polarization: -106.80 SS G_CDS: -4.24 Total: -111.04 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.05 Total: -26.60 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -68.94 4.57 -64.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702141085.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.489 kcal (2) G-P(sol) polarization free energy of solvation -68.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds