Wall clock time and date at job start Mon Mar 30 2020 04:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99728 * 2 1 4 4 H 1.48503 * 109.46896 * 269.99853 * 3 2 1 5 5 H 1.48498 * 109.47087 * 30.00050 * 3 2 1 6 6 H 1.48500 * 109.46729 * 150.00020 * 3 2 1 7 7 C 1.37879 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00113 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99791 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47059 * 180.02562 * 9 7 2 11 11 C 1.34782 * 120.00235 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99389 * 359.97438 * 11 10 9 13 13 C 1.50696 * 119.99855 * 179.97438 * 11 10 9 14 14 N 1.46904 * 109.46800 * 180.02562 * 13 11 10 15 15 C 1.46899 * 111.00029 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47254 * 179.97438 * 15 14 13 17 17 H 1.09004 * 110.45715 * 307.60777 * 16 15 14 18 18 C 1.54990 * 110.51298 * 70.35319 * 16 15 14 19 19 C 1.54920 * 102.81987 * 156.21164 * 18 16 15 20 20 C 1.54381 * 104.22512 * 322.28135 * 19 18 16 21 21 C 1.53480 * 106.39932 * 23.55778 * 20 19 18 22 22 C 1.52556 * 121.08354 * 144.06778 * 21 20 19 23 23 C 1.52570 * 121.05136 * 215.77810 * 21 20 19 24 24 H 0.96998 * 120.00283 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47179 * 59.99950 * 9 7 2 26 26 H 1.09003 * 109.47014 * 299.99639 * 9 7 2 27 27 H 0.97000 * 120.00198 * 359.97438 * 10 9 7 28 28 H 1.08995 * 109.47455 * 60.00021 * 13 11 10 29 29 H 1.09003 * 109.47449 * 299.99253 * 13 11 10 30 30 H 1.00902 * 111.00190 * 56.03702 * 14 13 11 31 31 H 1.09002 * 109.47043 * 299.99792 * 15 14 13 32 32 H 1.09001 * 109.47354 * 59.99854 * 15 14 13 33 33 H 1.08994 * 110.74646 * 274.55133 * 18 16 15 34 34 H 1.09008 * 110.74068 * 37.88289 * 18 16 15 35 35 H 1.09005 * 110.48025 * 203.59596 * 19 18 16 36 36 H 1.09002 * 110.59328 * 81.02608 * 19 18 16 37 37 H 1.09001 * 110.07146 * 264.32184 * 20 19 18 38 38 H 1.09004 * 110.11753 * 142.81884 * 20 19 18 39 39 H 1.09005 * 117.50545 * 217.88812 * 22 21 20 40 40 H 1.08999 * 117.51211 * 2.96407 * 22 21 20 41 41 H 1.09001 * 117.51293 * 356.97809 * 23 21 20 42 42 H 1.09003 * 117.50897 * 142.06167 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 7 2.2031 -3.6126 -0.0015 11 6 1.7539 -4.8834 -0.0029 12 8 0.5615 -5.1049 -0.0039 13 6 2.7333 -6.0287 -0.0032 14 7 1.9988 -7.3010 -0.0055 15 6 2.9233 -8.4425 -0.0053 16 6 2.1233 -9.7467 -0.0070 17 1 1.3920 -9.7461 0.8013 18 6 1.4248 -9.9535 -1.3750 19 6 1.2206 -11.4883 -1.4282 20 6 2.4990 -12.0637 -0.7816 21 6 3.0650 -10.9571 0.1188 22 6 3.7377 -11.2895 1.4470 23 6 4.5701 -10.7627 0.2752 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5563 -0.8919 26 1 0.6242 -2.5575 0.8881 27 1 3.1568 -3.4354 -0.0010 28 1 3.3593 -5.9718 0.8872 29 1 3.3605 -5.9702 -0.8928 30 1 1.3631 -7.3501 -0.7875 31 1 3.5525 -8.4007 -0.8944 32 1 3.5501 -8.4024 0.8856 33 1 0.4662 -9.4354 -1.4013 34 1 2.0670 -9.6211 -2.1906 35 1 1.1305 -11.8255 -2.4608 36 1 0.3398 -11.7780 -0.8551 37 1 3.2232 -12.3252 -1.5531 38 1 2.2545 -12.9427 -0.1852 39 1 3.5616 -10.6133 2.2837 40 1 3.8448 -12.3424 1.7076 41 1 5.2248 -11.4692 -0.2351 42 1 4.9416 -9.7400 0.3410 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706207918.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:37 Heat of formation + Delta-G solvation = -32.411339 kcal Electronic energy + Delta-G solvation = -19709.589275 eV Core-core repulsion = 16689.198796 eV Total energy + Delta-G solvation = -3020.390479 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.85505 -38.74608 -35.57098 -34.25026 -34.04922 -32.30816 -30.38230 -27.75374 -26.34404 -25.34366 -23.38979 -22.58057 -22.18446 -20.52848 -19.70559 -18.60084 -17.20690 -16.23570 -15.89647 -15.58660 -15.29058 -15.08262 -14.92978 -14.37882 -14.12160 -13.68809 -13.28624 -13.05416 -12.86516 -12.57532 -12.25823 -12.04416 -11.90255 -11.69985 -11.41210 -11.28790 -10.99702 -10.91446 -10.87132 -10.77632 -10.70506 -10.40982 -10.31107 -9.79809 -9.38795 -9.01510 -8.72494 -8.33951 -7.84731 -6.15827 -4.22787 3.24423 3.30454 3.32981 3.41399 3.51745 3.82760 4.19188 4.31951 4.41035 4.54016 4.62360 4.74392 4.92591 4.97970 5.11845 5.20111 5.25834 5.36576 5.39492 5.43425 5.49307 5.56385 5.58205 5.62392 5.65049 5.69289 5.78237 5.86544 5.90582 5.91284 6.00970 6.09358 6.24153 6.95609 7.33510 7.43183 7.47487 7.53877 7.68733 7.98373 8.65450 8.80041 9.14074 9.43998 10.94413 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.045633 B = 0.002817 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.442216 B = 9937.252065 C =10312.456596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.715 5.715 11 C 0.496 3.504 12 O -0.544 6.544 13 C 0.040 3.960 14 N -0.672 5.672 15 C 0.067 3.933 16 C -0.055 4.055 17 H 0.089 0.911 18 C -0.122 4.122 19 C -0.122 4.122 20 C -0.087 4.087 21 C -0.123 4.123 22 C -0.171 4.171 23 C -0.174 4.174 24 H 0.266 0.734 25 H 0.026 0.974 26 H 0.027 0.973 27 H 0.390 0.610 28 H 0.095 0.905 29 H 0.052 0.948 30 H 0.350 0.650 31 H 0.030 0.970 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.023 -22.715 -1.475 24.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.364 5.364 11 C 0.280 3.720 12 O -0.422 6.422 13 C -0.093 4.093 14 N -0.305 5.305 15 C -0.062 4.062 16 C -0.073 4.073 17 H 0.107 0.893 18 C -0.159 4.159 19 C -0.159 4.159 20 C -0.125 4.125 21 C -0.123 4.123 22 C -0.208 4.208 23 C -0.211 4.211 24 H 0.076 0.924 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.222 0.778 28 H 0.113 0.887 29 H 0.070 0.930 30 H 0.170 0.830 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.886 -22.721 -0.795 24.063 hybrid contribution 1.334 1.093 -0.855 1.925 sum 9.220 -21.627 -1.651 23.568 Atomic orbital electron populations 1.69977 1.06108 1.27293 1.48917 1.24960 0.94917 0.99457 0.94727 0.86414 0.79623 0.82664 0.78198 1.20479 1.20989 1.19753 1.21233 0.93250 0.90493 1.53171 0.91924 1.19085 0.88307 0.81931 0.97701 1.46447 1.11057 1.06131 1.72776 1.20367 0.89557 0.84242 0.77832 1.90660 1.16686 1.84716 1.50097 1.21834 0.95682 0.89603 1.02134 1.60102 1.19022 0.99937 1.51434 1.22046 0.94187 0.89709 1.00278 1.21474 0.96208 0.91226 0.98437 0.89264 1.22577 1.00799 0.95926 0.96633 1.22312 0.97506 0.95686 1.00429 1.21629 0.96928 0.96392 0.97527 1.21754 0.93811 0.97610 0.99169 1.22952 1.04167 1.01680 0.91972 1.23040 0.93051 1.02471 1.02539 0.92445 0.95626 0.95534 0.77814 0.88703 0.92980 0.82988 0.95178 0.91120 0.90853 0.91620 0.91709 0.91462 0.91777 0.91751 0.88619 0.88993 0.89065 0.88481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -14.84 9.28 -34.44 -0.32 -15.16 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.72 5.43 -5.19 -0.03 6.69 16 10 N -0.71 -15.15 5.55 -61.48 -0.34 -15.49 16 11 C 0.50 10.00 7.87 -10.99 -0.09 9.91 16 12 O -0.54 -13.29 16.20 5.56 0.09 -13.20 16 13 C 0.04 0.58 6.17 -4.98 -0.03 0.55 16 14 N -0.67 -9.42 6.12 -115.06 -0.70 -10.12 16 15 C 0.07 0.72 3.95 -3.83 -0.02 0.71 16 16 C -0.05 -0.55 2.96 -89.12 -0.26 -0.81 16 17 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 18 C -0.12 -1.14 5.70 -24.67 -0.14 -1.28 16 19 C -0.12 -0.98 6.84 -24.99 -0.17 -1.15 16 20 C -0.09 -0.68 6.54 -25.76 -0.17 -0.85 16 21 C -0.12 -1.06 2.40 -154.26 -0.37 -1.43 16 22 C -0.17 -1.38 10.26 -26.91 -0.28 -1.65 16 23 C -0.17 -1.39 9.56 -26.91 -0.26 -1.64 16 24 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.39 7.01 8.32 -40.82 -0.34 6.67 16 28 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.35 5.11 7.74 -39.29 -0.30 4.80 16 31 H 0.03 0.31 7.98 -51.93 -0.41 -0.10 16 32 H 0.07 0.75 7.22 -51.93 -0.38 0.37 16 33 H 0.07 0.73 8.06 -51.93 -0.42 0.32 16 34 H 0.07 0.61 7.96 -51.92 -0.41 0.20 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.10 0.78 6.42 -51.93 -0.33 0.45 16 LS Contribution 341.75 15.07 5.15 5.15 Total: -1.00 -31.74 341.75 -9.52 -41.26 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -7.21 Total: 6.52 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -2.22 Total: -4.46 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: -0.31 Total: -51.18 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.09 Total: -13.20 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.74 -9.52 -41.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706207918.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.850 kcal (2) G-P(sol) polarization free energy of solvation -31.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds