Wall clock time and date at job start Mon Mar 30 2020 04:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99728 * 2 1 4 4 H 1.48503 * 109.46896 * 269.99853 * 3 2 1 5 5 H 1.48498 * 109.47087 * 30.00050 * 3 2 1 6 6 H 1.48500 * 109.46729 * 150.00020 * 3 2 1 7 7 C 1.37879 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00113 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99791 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47059 * 180.02562 * 9 7 2 11 11 C 1.34782 * 120.00235 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99389 * 359.97438 * 11 10 9 13 13 C 1.50696 * 119.99855 * 179.97438 * 11 10 9 14 14 N 1.46904 * 109.46800 * 180.02562 * 13 11 10 15 15 C 1.46899 * 111.00029 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47254 * 179.97438 * 15 14 13 17 17 H 1.09004 * 110.45715 * 307.60777 * 16 15 14 18 18 C 1.54990 * 110.51298 * 70.35319 * 16 15 14 19 19 C 1.54920 * 102.81987 * 156.21164 * 18 16 15 20 20 C 1.54381 * 104.22512 * 322.28135 * 19 18 16 21 21 C 1.53480 * 106.39932 * 23.55778 * 20 19 18 22 22 C 1.52556 * 121.08354 * 144.06778 * 21 20 19 23 23 C 1.52570 * 121.05136 * 215.77810 * 21 20 19 24 24 H 0.96998 * 120.00283 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47179 * 59.99950 * 9 7 2 26 26 H 1.09003 * 109.47014 * 299.99639 * 9 7 2 27 27 H 0.97000 * 120.00198 * 359.97438 * 10 9 7 28 28 H 1.08995 * 109.47455 * 60.00021 * 13 11 10 29 29 H 1.09003 * 109.47449 * 299.99253 * 13 11 10 30 30 H 1.00902 * 111.00190 * 56.03702 * 14 13 11 31 31 H 1.09002 * 109.47043 * 299.99792 * 15 14 13 32 32 H 1.09001 * 109.47354 * 59.99854 * 15 14 13 33 33 H 1.08994 * 110.74646 * 274.55133 * 18 16 15 34 34 H 1.09008 * 110.74068 * 37.88289 * 18 16 15 35 35 H 1.09005 * 110.48025 * 203.59596 * 19 18 16 36 36 H 1.09002 * 110.59328 * 81.02608 * 19 18 16 37 37 H 1.09001 * 110.07146 * 264.32184 * 20 19 18 38 38 H 1.09004 * 110.11753 * 142.81884 * 20 19 18 39 39 H 1.09005 * 117.50545 * 217.88812 * 22 21 20 40 40 H 1.08999 * 117.51211 * 2.96407 * 22 21 20 41 41 H 1.09001 * 117.51293 * 356.97809 * 23 21 20 42 42 H 1.09003 * 117.50897 * 142.06167 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 7 2.2031 -3.6126 -0.0015 11 6 1.7539 -4.8834 -0.0029 12 8 0.5615 -5.1049 -0.0039 13 6 2.7333 -6.0287 -0.0032 14 7 1.9988 -7.3010 -0.0055 15 6 2.9233 -8.4425 -0.0053 16 6 2.1233 -9.7467 -0.0070 17 1 1.3920 -9.7461 0.8013 18 6 1.4248 -9.9535 -1.3750 19 6 1.2206 -11.4883 -1.4282 20 6 2.4990 -12.0637 -0.7816 21 6 3.0650 -10.9571 0.1188 22 6 3.7377 -11.2895 1.4470 23 6 4.5701 -10.7627 0.2752 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5563 -0.8919 26 1 0.6242 -2.5575 0.8881 27 1 3.1568 -3.4354 -0.0010 28 1 3.3593 -5.9718 0.8872 29 1 3.3605 -5.9702 -0.8928 30 1 1.3631 -7.3501 -0.7875 31 1 3.5525 -8.4007 -0.8944 32 1 3.5501 -8.4024 0.8856 33 1 0.4662 -9.4354 -1.4013 34 1 2.0670 -9.6211 -2.1906 35 1 1.1305 -11.8255 -2.4608 36 1 0.3398 -11.7780 -0.8551 37 1 3.2232 -12.3252 -1.5531 38 1 2.2545 -12.9427 -0.1852 39 1 3.5616 -10.6133 2.2837 40 1 3.8448 -12.3424 1.7076 41 1 5.2248 -11.4692 -0.2351 42 1 4.9416 -9.7400 0.3410 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706207918.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:37 Heat of formation + Delta-G solvation = -54.330154 kcal Electronic energy + Delta-G solvation = -19710.539746 eV Core-core repulsion = 16689.198796 eV Total energy + Delta-G solvation = -3021.340950 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.72090 -40.26787 -36.69739 -36.00814 -34.89767 -34.33916 -31.39647 -29.52815 -27.38723 -26.44041 -24.56659 -23.90251 -23.14149 -21.41917 -21.24872 -19.46413 -18.84441 -17.68403 -17.21056 -16.99590 -16.57666 -16.27087 -15.88951 -15.65156 -15.53618 -14.78379 -14.49843 -14.35424 -14.08399 -13.84196 -13.68922 -13.29326 -13.17910 -12.91939 -12.75976 -12.64981 -12.29416 -12.22936 -11.96083 -11.64613 -11.52978 -11.48889 -11.42453 -11.05627 -10.80561 -10.73499 -10.43059 -9.82877 -9.38357 -8.29378 -6.46224 1.42966 1.45573 1.56839 1.78536 2.29016 2.49707 2.89521 3.05420 3.27633 3.57756 3.71049 3.94710 3.97127 4.03988 4.24351 4.28330 4.35032 4.40708 4.48161 4.54431 4.58948 4.79558 4.84531 4.91550 4.98731 5.00368 5.09517 5.10880 5.17597 5.22293 5.24060 5.31048 5.35970 5.38008 5.48565 5.48918 5.68760 5.84686 5.98712 6.32785 6.65225 6.94060 7.23412 7.51878 8.82951 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.045633 B = 0.002817 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.442216 B = 9937.252065 C =10312.456596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.986 3.014 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.556 4.556 8 H 0.085 0.915 9 C 0.267 3.733 10 N -0.709 5.709 11 C 0.491 3.509 12 O -0.593 6.593 13 C 0.056 3.944 14 N -0.691 5.691 15 C 0.073 3.927 16 C -0.054 4.054 17 H 0.069 0.931 18 C -0.122 4.122 19 C -0.121 4.121 20 C -0.085 4.085 21 C -0.130 4.130 22 C -0.172 4.172 23 C -0.168 4.168 24 H 0.269 0.731 25 H -0.013 1.013 26 H -0.015 1.015 27 H 0.409 0.591 28 H 0.120 0.880 29 H 0.084 0.916 30 H 0.344 0.656 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.994 -23.251 -1.720 26.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.179 1.179 7 C -0.594 4.594 8 H 0.103 0.897 9 C 0.144 3.856 10 N -0.359 5.359 11 C 0.279 3.721 12 O -0.473 6.473 13 C -0.076 4.076 14 N -0.324 5.324 15 C -0.055 4.055 16 C -0.073 4.073 17 H 0.088 0.912 18 C -0.160 4.160 19 C -0.158 4.158 20 C -0.122 4.122 21 C -0.131 4.131 22 C -0.209 4.209 23 C -0.205 4.205 24 H 0.078 0.922 25 H 0.005 0.995 26 H 0.003 0.997 27 H 0.244 0.756 28 H 0.138 0.862 29 H 0.102 0.898 30 H 0.163 0.837 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 10.916 -23.294 -1.037 25.746 hybrid contribution 0.351 1.189 -0.767 1.458 sum 11.267 -22.105 -1.804 24.876 Atomic orbital electron populations 1.70144 1.08327 1.28580 1.50013 1.26096 0.95784 1.03997 0.93861 0.85142 0.78487 0.76877 0.78617 1.19546 1.21001 1.17850 1.21630 0.94338 0.90562 1.52835 0.89724 1.18516 0.88729 0.84422 0.93950 1.46179 1.11183 1.05510 1.73075 1.21461 0.89977 0.84980 0.75728 1.90638 1.19389 1.85414 1.51909 1.21756 0.94017 0.87090 1.04695 1.60114 1.20041 1.00666 1.51550 1.22070 0.93764 0.88646 1.01035 1.21407 0.96186 0.91680 0.98020 0.91241 1.22558 1.00104 0.96899 0.96432 1.22313 0.97767 0.94621 1.01103 1.21625 0.96727 0.96239 0.97619 1.21747 0.94176 0.97188 0.99989 1.23003 1.04028 1.02230 0.91672 1.23103 0.92495 1.02815 1.02112 0.92247 0.99545 0.99711 0.75560 0.86234 0.89828 0.83684 0.93906 0.90534 0.92236 0.91338 0.90735 0.91740 0.90956 0.91162 0.89212 0.87984 0.87951 0.88424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.79 13.29 21.45 0.28 -56.51 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.99 42.42 29.54 68.60 2.03 44.45 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.25 -10.16 7.11 99.48 0.71 -9.46 16 7 C -0.56 -30.42 9.28 25.60 0.24 -30.19 16 8 H 0.08 4.16 7.60 -2.91 -0.02 4.13 16 9 C 0.27 14.85 5.43 85.63 0.46 15.32 16 10 N -0.71 -30.07 5.55 -466.79 -2.59 -32.66 16 11 C 0.49 19.86 7.87 87.65 0.69 20.55 16 12 O -0.59 -30.05 16.20 -3.03 -0.05 -30.10 16 13 C 0.06 1.51 6.17 85.55 0.53 2.04 16 14 N -0.69 -18.69 6.12 -517.93 -3.17 -21.87 16 15 C 0.07 1.45 3.95 86.30 0.34 1.79 16 16 C -0.05 -1.03 2.96 -9.82 -0.03 -1.06 16 17 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 18 C -0.12 -2.22 5.70 31.93 0.18 -2.04 16 19 C -0.12 -1.81 6.84 31.72 0.22 -1.59 16 20 C -0.08 -1.16 6.54 31.22 0.20 -0.96 16 21 C -0.13 -2.02 2.40 -52.02 -0.12 -2.15 16 22 C -0.17 -2.47 10.26 30.48 0.31 -2.15 16 23 C -0.17 -2.26 9.56 30.48 0.29 -1.97 16 24 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 25 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 26 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 27 H 0.41 14.07 8.32 -92.71 -0.77 13.30 16 28 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 29 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.34 10.03 7.74 -89.69 -0.69 9.33 16 31 H 0.04 0.76 7.98 -2.39 -0.02 0.74 16 32 H 0.08 1.43 7.22 -2.39 -0.02 1.42 16 33 H 0.06 1.23 8.06 -2.39 -0.02 1.21 16 34 H 0.07 1.20 7.96 -2.38 -0.02 1.18 16 35 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.10 1.30 6.42 -2.39 -0.02 1.28 16 Total: -1.00 -71.11 341.75 -0.18 -71.29 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: -0.46 Total: 27.24 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 3.78 Total: -1.84 kcal Atomic # 7 Polarization: -105.56 SS G_CDS: -5.48 Total: -111.03 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -0.05 Total: -30.10 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -71.11 -0.18 -71.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706207918.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.961 kcal (2) G-P(sol) polarization free energy of solvation -71.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds