Wall clock time and date at job start Mon Mar 30 2020 04:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48505 * 109.46876 * 30.00467 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99932 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99788 * 179.97438 * 7 2 1 10 10 N 1.46497 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99566 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99795 * 180.02562 * 11 10 9 14 14 N 1.46901 * 109.46921 * 179.97438 * 13 11 10 15 15 C 1.46906 * 110.99793 * 179.97438 * 14 13 11 16 16 C 1.52995 * 109.46978 * 180.02562 * 15 14 13 17 17 H 1.09000 * 110.05498 * 53.51244 * 16 15 14 18 18 C 1.54390 * 110.07052 * 291.96677 * 16 15 14 19 19 C 1.54922 * 104.22349 * 217.20421 * 18 16 15 20 20 C 1.54986 * 102.82165 * 37.72806 * 19 18 16 21 21 C 1.53483 * 110.07108 * 175.00372 * 16 15 14 22 22 C 1.52552 * 121.07947 * 335.17545 * 21 16 15 23 23 C 1.52574 * 121.05255 * 263.46283 * 21 16 15 24 24 H 0.97009 * 119.99937 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 26 26 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 27 27 H 0.96995 * 120.00423 * 359.97438 * 10 9 7 28 28 H 1.09002 * 109.47060 * 299.99722 * 13 11 10 29 29 H 1.09001 * 109.47380 * 59.99809 * 13 11 10 30 30 H 1.00898 * 110.99877 * 56.04636 * 14 13 11 31 31 H 1.08995 * 109.47087 * 299.99901 * 15 14 13 32 32 H 1.09002 * 109.46903 * 59.99922 * 15 14 13 33 33 H 1.08999 * 110.48193 * 335.89063 * 18 16 15 34 34 H 1.09003 * 110.47931 * 98.51918 * 18 16 15 35 35 H 1.09004 * 110.74350 * 279.39607 * 19 18 16 36 36 H 1.08998 * 110.74532 * 156.05979 * 19 18 16 37 37 H 1.08996 * 110.51446 * 203.78935 * 20 19 18 38 38 H 1.08994 * 110.63097 * 81.12833 * 20 19 18 39 39 H 1.08997 * 117.51419 * 357.02788 * 22 21 16 40 40 H 1.09009 * 117.50934 * 142.11350 * 22 21 16 41 41 H 1.08999 * 117.51142 * 217.92688 * 23 21 16 42 42 H 1.09000 * 117.50933 * 2.98563 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9997 -2.5753 -0.0022 11 6 5.3248 -2.8216 -0.0024 12 8 6.1130 -1.8998 -0.0021 13 6 5.8271 -4.2424 -0.0041 14 7 7.2961 -4.2424 -0.0046 15 6 7.8226 -5.6139 -0.0056 16 6 9.3520 -5.5731 -0.0054 17 1 9.7093 -4.9552 0.8183 18 6 9.8673 -5.0156 -1.3498 19 6 11.1440 -5.8435 -1.6409 20 6 10.7569 -7.2592 -1.1428 21 6 9.9168 -6.9948 0.1190 22 6 9.1027 -8.1119 0.7643 23 6 10.3417 -7.5572 1.4722 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6805 0.8889 26 1 3.8745 -0.6801 -0.8911 27 1 3.3694 -3.3126 -0.0021 28 1 5.4637 -4.7574 0.8852 29 1 5.4639 -4.7552 -0.8948 30 1 7.6579 -3.7172 0.7773 31 1 7.4734 -6.1378 0.8841 32 1 7.4728 -6.1366 -0.8959 33 1 9.1267 -5.1679 -2.1349 34 1 10.1121 -3.9576 -1.2552 35 1 11.9928 -5.4550 -1.0781 36 1 11.3608 -5.8560 -2.7090 37 1 11.6490 -7.8338 -0.8941 38 1 10.1641 -7.7817 -1.8936 39 1 8.1281 -7.8511 1.1768 40 1 9.1769 -9.1070 0.3255 41 1 11.2307 -8.1873 1.4989 42 1 10.1825 -6.9310 2.3501 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706207920.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:41 Heat of formation + Delta-G solvation = -27.814977 kcal Electronic energy + Delta-G solvation = -19759.665252 eV Core-core repulsion = 16739.474087 eV Total energy + Delta-G solvation = -3020.191166 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.85133 -38.90464 -35.66155 -34.29815 -34.11173 -32.35047 -30.43592 -28.27144 -26.46797 -25.40062 -23.35594 -22.41810 -21.80755 -20.75142 -19.90528 -18.69256 -17.27782 -16.21609 -16.08729 -15.75231 -15.33689 -15.26106 -14.86987 -14.35030 -14.05903 -13.80120 -13.55043 -13.01356 -12.78655 -12.72372 -12.46988 -12.28129 -11.84822 -11.77018 -11.62868 -11.18805 -11.02896 -10.93814 -10.85868 -10.74844 -10.70257 -10.45680 -9.96854 -9.85695 -9.49386 -9.17641 -8.77584 -8.39232 -8.11979 -6.21480 -4.23696 3.24744 3.28627 3.33826 3.42611 3.45186 3.74205 4.17977 4.33301 4.35550 4.46267 4.59527 4.75970 4.94317 5.00397 5.08230 5.13826 5.18957 5.31393 5.37231 5.41580 5.46363 5.53375 5.54623 5.57123 5.65872 5.70963 5.76991 5.82228 5.88593 5.93634 6.02279 6.18799 6.29676 6.77295 6.93818 7.08128 7.24752 7.35323 7.40951 8.14829 8.52871 8.75671 8.96227 9.38891 10.90474 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.042433 B = 0.002981 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.708134 B = 9389.820441 C = 9735.114336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.878 3.122 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.221 3.779 10 N -0.708 5.708 11 C 0.498 3.502 12 O -0.546 6.546 13 C 0.041 3.959 14 N -0.671 5.671 15 C 0.067 3.933 16 C -0.054 4.054 17 H 0.072 0.928 18 C -0.104 4.104 19 C -0.126 4.126 20 C -0.087 4.087 21 C -0.123 4.123 22 C -0.174 4.174 23 C -0.171 4.171 24 H 0.268 0.732 25 H 0.024 0.976 26 H 0.021 0.979 27 H 0.396 0.604 28 H 0.054 0.946 29 H 0.097 0.903 30 H 0.349 0.651 31 H 0.028 0.972 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.980 -16.764 0.207 26.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.127 4.127 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.099 3.901 10 N -0.357 5.357 11 C 0.283 3.717 12 O -0.424 6.424 13 C -0.091 4.091 14 N -0.303 5.303 15 C -0.062 4.062 16 C -0.072 4.072 17 H 0.091 0.909 18 C -0.142 4.142 19 C -0.164 4.164 20 C -0.125 4.125 21 C -0.123 4.123 22 C -0.211 4.211 23 C -0.208 4.208 24 H 0.077 0.923 25 H 0.042 0.958 26 H 0.038 0.962 27 H 0.229 0.771 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.168 0.832 31 H 0.046 0.954 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 20.397 -15.873 -0.474 25.850 hybrid contribution -0.329 0.182 0.973 1.043 sum 20.068 -15.691 0.499 25.479 Atomic orbital electron populations 1.69885 1.06224 1.27426 1.49494 1.24805 0.94798 0.99209 0.93859 0.86803 0.80543 0.83178 0.79084 1.19814 1.20923 1.18512 1.21102 0.88563 0.95209 1.53273 0.90279 1.19471 0.95170 0.78714 0.96732 1.46168 1.05693 1.11005 1.72859 1.20427 0.83125 0.90699 0.77473 1.90652 1.55453 1.46069 1.50229 1.21811 0.89511 0.95417 1.02404 1.60099 1.05587 1.13335 1.51300 1.22104 0.94169 0.89424 1.00493 1.21202 0.93962 0.93109 0.98959 0.90927 1.22278 0.96326 0.99406 0.96182 1.22514 0.98222 0.95047 1.00582 1.21869 0.98201 0.97362 0.95049 1.21771 1.01984 0.94411 0.94159 1.22991 0.96062 0.97907 1.04123 1.22983 0.98744 1.03683 0.95378 0.92266 0.95804 0.96158 0.77090 0.92802 0.88462 0.83192 0.95359 0.90760 0.91089 0.91204 0.91669 0.91612 0.91984 0.91265 0.88538 0.88903 0.88949 0.88921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.62 13.96 55.43 0.77 -25.85 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.54 -14.99 9.83 -34.44 -0.34 -15.33 16 8 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 9 C 0.22 5.49 4.50 -5.19 -0.02 5.47 16 10 N -0.71 -14.34 5.55 -61.47 -0.34 -14.68 16 11 C 0.50 9.47 7.87 -10.98 -0.09 9.38 16 12 O -0.55 -12.49 16.20 5.56 0.09 -12.40 16 13 C 0.04 0.56 6.17 -4.97 -0.03 0.53 16 14 N -0.67 -8.78 5.95 -115.05 -0.68 -9.47 16 15 C 0.07 0.69 4.47 -3.82 -0.02 0.67 16 16 C -0.05 -0.51 2.95 -89.64 -0.26 -0.77 16 17 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 18 C -0.10 -1.03 6.21 -24.99 -0.16 -1.18 16 19 C -0.13 -1.03 6.91 -24.67 -0.17 -1.20 16 20 C -0.09 -0.67 6.58 -25.23 -0.17 -0.84 16 21 C -0.12 -1.02 2.26 -154.25 -0.35 -1.37 16 22 C -0.17 -1.33 9.61 -26.91 -0.26 -1.59 16 23 C -0.17 -1.30 10.24 -26.90 -0.28 -1.58 16 24 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 25 H 0.02 0.63 7.20 -51.93 -0.37 0.25 16 26 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 27 H 0.40 7.00 8.32 -40.82 -0.34 6.66 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.35 4.77 8.43 -39.29 -0.33 4.44 16 31 H 0.03 0.27 6.44 -51.93 -0.33 -0.06 16 32 H 0.07 0.76 8.00 -51.93 -0.42 0.35 16 33 H 0.07 0.75 7.76 -51.93 -0.40 0.35 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.43 8.11 -51.93 -0.42 0.01 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.10 0.75 6.40 -51.93 -0.33 0.42 16 40 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 338.76 15.07 5.10 5.10 Total: -1.00 -31.54 338.76 -9.11 -40.65 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -7.15 Total: 5.42 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -2.23 Total: -5.71 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: -0.25 Total: -49.99 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.09 Total: -12.40 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.54 -9.11 -40.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706207920.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.834 kcal (2) G-P(sol) polarization free energy of solvation -31.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds