Wall clock time and date at job start Mon Mar 30 2020 04:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48505 * 109.46876 * 30.00467 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99932 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99788 * 179.97438 * 7 2 1 10 10 N 1.46497 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99566 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99795 * 180.02562 * 11 10 9 14 14 N 1.46901 * 109.46921 * 179.97438 * 13 11 10 15 15 C 1.46906 * 110.99793 * 179.97438 * 14 13 11 16 16 C 1.52995 * 109.46978 * 180.02562 * 15 14 13 17 17 H 1.09000 * 110.05498 * 53.51244 * 16 15 14 18 18 C 1.54390 * 110.07052 * 291.96677 * 16 15 14 19 19 C 1.54922 * 104.22349 * 217.20421 * 18 16 15 20 20 C 1.54986 * 102.82165 * 37.72806 * 19 18 16 21 21 C 1.53483 * 110.07108 * 175.00372 * 16 15 14 22 22 C 1.52552 * 121.07947 * 335.17545 * 21 16 15 23 23 C 1.52574 * 121.05255 * 263.46283 * 21 16 15 24 24 H 0.97009 * 119.99937 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 26 26 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 27 27 H 0.96995 * 120.00423 * 359.97438 * 10 9 7 28 28 H 1.09002 * 109.47060 * 299.99722 * 13 11 10 29 29 H 1.09001 * 109.47380 * 59.99809 * 13 11 10 30 30 H 1.00898 * 110.99877 * 56.04636 * 14 13 11 31 31 H 1.08995 * 109.47087 * 299.99901 * 15 14 13 32 32 H 1.09002 * 109.46903 * 59.99922 * 15 14 13 33 33 H 1.08999 * 110.48193 * 335.89063 * 18 16 15 34 34 H 1.09003 * 110.47931 * 98.51918 * 18 16 15 35 35 H 1.09004 * 110.74350 * 279.39607 * 19 18 16 36 36 H 1.08998 * 110.74532 * 156.05979 * 19 18 16 37 37 H 1.08996 * 110.51446 * 203.78935 * 20 19 18 38 38 H 1.08994 * 110.63097 * 81.12833 * 20 19 18 39 39 H 1.08997 * 117.51419 * 357.02788 * 22 21 16 40 40 H 1.09009 * 117.50934 * 142.11350 * 22 21 16 41 41 H 1.08999 * 117.51142 * 217.92688 * 23 21 16 42 42 H 1.09000 * 117.50933 * 2.98563 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9997 -2.5753 -0.0022 11 6 5.3248 -2.8216 -0.0024 12 8 6.1130 -1.8998 -0.0021 13 6 5.8271 -4.2424 -0.0041 14 7 7.2961 -4.2424 -0.0046 15 6 7.8226 -5.6139 -0.0056 16 6 9.3520 -5.5731 -0.0054 17 1 9.7093 -4.9552 0.8183 18 6 9.8673 -5.0156 -1.3498 19 6 11.1440 -5.8435 -1.6409 20 6 10.7569 -7.2592 -1.1428 21 6 9.9168 -6.9948 0.1190 22 6 9.1027 -8.1119 0.7643 23 6 10.3417 -7.5572 1.4722 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6805 0.8889 26 1 3.8745 -0.6801 -0.8911 27 1 3.3694 -3.3126 -0.0021 28 1 5.4637 -4.7574 0.8852 29 1 5.4639 -4.7552 -0.8948 30 1 7.6579 -3.7172 0.7773 31 1 7.4734 -6.1378 0.8841 32 1 7.4728 -6.1366 -0.8959 33 1 9.1267 -5.1679 -2.1349 34 1 10.1121 -3.9576 -1.2552 35 1 11.9928 -5.4550 -1.0781 36 1 11.3608 -5.8560 -2.7090 37 1 11.6490 -7.8338 -0.8941 38 1 10.1641 -7.7817 -1.8936 39 1 8.1281 -7.8511 1.1768 40 1 9.1769 -9.1070 0.3255 41 1 11.2307 -8.1873 1.4989 42 1 10.1825 -6.9310 2.3501 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706207920.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:41 Heat of formation + Delta-G solvation = -49.477571 kcal Electronic energy + Delta-G solvation = -19760.604613 eV Core-core repulsion = 16739.474087 eV Total energy + Delta-G solvation = -3021.130526 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.71820 -40.28039 -36.72053 -36.01871 -34.87320 -34.40259 -31.45504 -29.98673 -27.45611 -26.38716 -24.26957 -23.69898 -22.96203 -21.52493 -21.43794 -19.55504 -18.99553 -17.75915 -17.23535 -16.93756 -16.56492 -16.25500 -15.97092 -15.69957 -15.39540 -14.87529 -14.75785 -14.45365 -14.28786 -13.96851 -13.57126 -13.39076 -13.07281 -13.03943 -12.68822 -12.61210 -12.28212 -11.94070 -11.85404 -11.67151 -11.65271 -11.60452 -11.41978 -11.06145 -10.92679 -10.78802 -10.45073 -9.92703 -9.34879 -8.40880 -6.47813 1.32325 1.34441 1.47052 1.74930 2.27252 2.34863 2.87436 2.94563 3.27115 3.58170 3.76964 3.90802 3.97591 4.05680 4.23990 4.31392 4.36147 4.42053 4.47520 4.54298 4.66039 4.78355 4.82712 4.86277 4.91959 4.97776 5.02660 5.03661 5.12713 5.19558 5.25549 5.27538 5.30575 5.36854 5.42351 5.52704 5.54944 5.93703 6.10616 6.33349 6.53471 6.87177 7.15417 7.43520 8.73845 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.042433 B = 0.002981 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.708134 B = 9389.820441 C = 9735.114336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.026 3.974 3 Si 0.938 3.062 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.233 3.767 10 N -0.708 5.708 11 C 0.497 3.503 12 O -0.587 6.587 13 C 0.055 3.945 14 N -0.686 5.686 15 C 0.073 3.927 16 C -0.052 4.052 17 H 0.064 0.936 18 C -0.106 4.106 19 C -0.123 4.123 20 C -0.085 4.085 21 C -0.130 4.130 22 C -0.171 4.171 23 C -0.170 4.170 24 H 0.272 0.728 25 H 0.012 0.988 26 H 0.009 0.991 27 H 0.409 0.591 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.344 0.656 31 H 0.040 0.960 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.262 -18.044 0.278 27.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.174 4.174 3 Si 0.762 3.238 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.585 4.585 8 H 0.078 0.922 9 C 0.109 3.891 10 N -0.358 5.358 11 C 0.284 3.716 12 O -0.467 6.467 13 C -0.077 4.077 14 N -0.318 5.318 15 C -0.055 4.055 16 C -0.071 4.071 17 H 0.083 0.917 18 C -0.143 4.143 19 C -0.160 4.160 20 C -0.122 4.122 21 C -0.130 4.130 22 C -0.207 4.207 23 C -0.207 4.207 24 H 0.082 0.918 25 H 0.029 0.971 26 H 0.027 0.973 27 H 0.245 0.755 28 H 0.100 0.900 29 H 0.136 0.864 30 H 0.162 0.838 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 21.679 -17.199 -0.406 27.676 hybrid contribution -0.728 0.521 0.953 1.307 sum 20.951 -16.678 0.546 26.784 Atomic orbital electron populations 1.69982 1.07674 1.28622 1.50727 1.25608 0.95549 1.02694 0.93595 0.85850 0.79210 0.79338 0.79436 1.19047 1.19755 1.18549 1.21304 0.89973 0.94601 1.52579 0.92191 1.19063 0.93308 0.81240 0.95510 1.46025 1.06853 1.09621 1.73319 1.21360 0.81962 0.92696 0.75564 1.90632 1.56255 1.48032 1.51799 1.21748 0.89918 0.91402 1.04637 1.60111 1.05241 1.15076 1.51378 1.22111 0.94457 0.87849 1.01100 1.21159 0.93577 0.93993 0.98342 0.91748 1.22242 0.97064 0.98810 0.96223 1.22497 0.97324 0.95137 1.01090 1.21862 0.98558 0.96978 0.94791 1.21746 1.02663 0.93766 0.94873 1.23046 0.95986 0.98021 1.03697 1.23047 0.99231 1.03578 0.94832 0.91832 0.97060 0.97308 0.75548 0.90038 0.86372 0.83776 0.94182 0.90442 0.92005 0.92809 0.91547 0.90979 0.90978 0.91007 0.88597 0.87973 0.87972 0.89142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.83 13.96 21.45 0.30 -55.53 16 2 C 0.03 1.47 5.47 84.66 0.46 1.93 16 3 Si 0.94 44.47 27.47 68.60 1.88 46.36 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 6 H -0.26 -12.31 6.54 99.48 0.65 -11.66 16 7 C -0.55 -30.33 9.83 25.60 0.25 -30.08 16 8 H 0.06 3.48 7.84 -2.91 -0.02 3.45 16 9 C 0.23 11.53 4.50 85.63 0.38 11.91 16 10 N -0.71 -28.12 5.55 -466.78 -2.59 -30.71 16 11 C 0.50 18.35 7.87 87.66 0.69 19.04 16 12 O -0.59 -26.70 16.20 -3.03 -0.05 -26.75 16 13 C 0.05 1.37 6.17 85.56 0.53 1.90 16 14 N -0.69 -16.93 5.95 -517.92 -3.08 -20.02 16 15 C 0.07 1.35 4.47 86.30 0.39 1.74 16 16 C -0.05 -0.92 2.95 -10.16 -0.03 -0.95 16 17 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 18 C -0.11 -2.01 6.21 31.72 0.20 -1.81 16 19 C -0.12 -1.84 6.91 31.93 0.22 -1.62 16 20 C -0.08 -1.13 6.58 31.57 0.21 -0.92 16 21 C -0.13 -1.89 2.26 -52.01 -0.12 -2.01 16 22 C -0.17 -2.19 9.61 30.48 0.29 -1.90 16 23 C -0.17 -2.22 10.24 30.48 0.31 -1.91 16 24 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16 25 H 0.01 0.60 7.20 -2.39 -0.02 0.58 16 26 H 0.01 0.47 7.57 -2.39 -0.02 0.45 16 27 H 0.41 14.01 8.32 -92.71 -0.77 13.24 16 28 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.34 9.10 8.43 -89.70 -0.76 8.34 16 31 H 0.04 0.66 6.44 -2.39 -0.02 0.65 16 32 H 0.08 1.40 8.00 -2.39 -0.02 1.39 16 33 H 0.06 1.27 7.76 -2.39 -0.02 1.26 16 34 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 36 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.07 0.83 8.11 -2.39 -0.02 0.81 16 38 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.10 1.24 6.40 -2.39 -0.02 1.23 16 40 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 41 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -67.28 338.76 -0.33 -67.61 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: -0.57 Total: 23.74 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 3.79 Total: -4.70 kcal Atomic # 7 Polarization: -100.88 SS G_CDS: -5.37 Total: -106.25 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.05 Total: -26.75 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.36 kcal Total: -67.28 -0.33 -67.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706207920.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.132 kcal (2) G-P(sol) polarization free energy of solvation -67.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds