Wall clock time and date at job start Mon Mar 30 2020 04:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00142 * 2 1 4 4 H 1.48503 * 109.46928 * 269.99740 * 3 2 1 5 5 H 1.48497 * 109.47130 * 29.99998 * 3 2 1 6 6 H 1.48499 * 109.47231 * 149.99984 * 3 2 1 7 7 C 1.37882 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00050 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99891 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47087 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47345 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47080 * 54.99155 * 11 10 9 13 13 N 1.46905 * 109.46631 * 294.99589 * 11 10 9 14 14 C 1.50700 * 109.47277 * 174.99661 * 11 10 9 15 15 O 1.21283 * 119.99803 * 99.99659 * 14 11 10 16 16 N 1.34777 * 119.99675 * 280.27534 * 14 11 10 17 17 C 1.47252 * 136.46869 * 359.71691 * 16 14 11 18 18 C 1.53995 * 87.66444 * 151.82126 * 17 16 14 19 19 H 1.09003 * 114.97333 * 141.29440 * 18 17 16 20 20 C 1.53027 * 111.64008 * 272.89337 * 18 17 16 21 21 C 1.52923 * 108.94630 * 140.49827 * 20 18 17 22 22 C 1.52546 * 109.49287 * 297.54850 * 21 20 18 23 23 C 1.51643 * 111.24356 * 62.90415 * 22 21 20 24 24 C 1.46559 * 136.46187 * 179.35972 * 16 14 11 25 25 H 1.08992 * 111.29009 * 96.07332 * 24 16 14 26 26 H 0.96995 * 120.00318 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.47199 * 59.99731 * 9 7 2 28 28 H 1.09008 * 109.46860 * 299.99618 * 9 7 2 29 29 H 1.09000 * 109.47628 * 59.99118 * 10 9 7 30 30 H 1.09003 * 109.46966 * 299.99465 * 10 9 7 31 31 H 1.00898 * 110.99843 * 299.99868 * 13 11 10 32 32 H 1.00899 * 110.99818 * 63.95660 * 13 11 10 33 33 H 1.08998 * 113.52361 * 266.52377 * 17 16 14 34 34 H 1.09003 * 113.51245 * 37.12565 * 17 16 14 35 35 H 1.09008 * 109.53699 * 260.82234 * 20 18 17 36 36 H 1.08997 * 109.54443 * 21.07773 * 20 18 17 37 37 H 1.09000 * 109.54154 * 177.39250 * 21 20 18 38 38 H 1.09002 * 109.04901 * 57.40696 * 21 20 18 39 39 H 1.08999 * 109.12760 * 302.44878 * 22 21 20 40 40 H 1.09009 * 109.07394 * 183.32448 * 22 21 20 41 41 H 1.09001 * 108.55160 * 191.44157 * 23 22 21 42 42 H 1.09007 * 108.42831 * 73.77516 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4801 -4.9872 -0.0020 12 1 0.7883 -5.0069 -0.8440 13 7 0.7279 -5.1187 1.2530 14 6 2.4548 -6.1299 -0.1257 15 8 2.7862 -6.7536 0.8603 16 7 2.9623 -6.4552 -1.3311 17 6 2.8237 -5.9693 -2.7142 18 6 4.2561 -6.4743 -2.9684 19 1 4.4166 -6.9308 -3.9451 20 6 5.3004 -5.4178 -2.6011 21 6 6.4888 -6.1070 -1.9292 22 6 6.0272 -6.7720 -0.6363 23 6 5.0071 -7.8597 -0.9116 24 6 3.9054 -7.4476 -1.8541 25 1 3.3844 -8.3234 -2.2407 26 1 -0.4850 0.8400 -0.0004 27 1 0.6246 -2.5563 -0.8919 28 1 0.6239 -2.5575 0.8881 29 1 2.8712 -3.6048 0.8889 30 1 2.8724 -3.6040 -0.8910 31 1 1.3475 -5.1031 2.0492 32 1 0.0231 -4.4007 1.3291 33 1 2.0661 -6.5023 -3.2887 34 1 2.7250 -4.8861 -2.7868 35 1 5.6304 -4.9023 -3.5031 36 1 4.8637 -4.6989 -1.9079 37 1 7.2591 -5.3691 -1.7051 38 1 6.8905 -6.8622 -2.6047 39 1 5.5800 -6.0190 0.0127 40 1 6.8895 -7.2100 -0.1334 41 1 4.5587 -8.1622 0.0347 42 1 5.5256 -8.7183 -1.3386 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706866522.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:42 Heat of formation + Delta-G solvation = -24.980324 kcal Electronic energy + Delta-G solvation = -21262.133806 eV Core-core repulsion = 18242.065560 eV Total energy + Delta-G solvation = -3020.068246 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.19019 -38.33994 -35.37546 -34.98397 -32.83481 -31.39844 -29.93019 -29.53389 -26.31699 -25.80466 -24.03310 -22.83813 -21.41274 -20.66028 -19.63383 -17.94617 -17.09359 -16.37273 -16.06908 -15.70721 -14.85163 -14.60617 -14.45720 -14.17720 -13.93142 -13.89756 -13.37273 -12.92619 -12.77070 -12.51618 -12.36910 -12.07847 -11.80177 -11.63896 -11.46655 -11.12301 -11.04282 -10.91718 -10.69010 -10.57049 -10.53031 -10.01639 -9.95372 -9.78143 -9.25633 -9.09181 -8.52799 -8.44089 -8.14224 -6.08591 -4.11686 2.92835 3.03753 3.26480 3.33413 3.36782 4.13920 4.38964 4.56329 4.66013 4.84995 4.93508 5.02991 5.18850 5.22601 5.26931 5.27884 5.40279 5.42843 5.51734 5.54997 5.64145 5.73083 5.80697 5.83549 5.89825 5.98847 6.07742 6.17798 6.20208 6.32262 6.34942 6.43759 6.56885 6.88948 7.49135 7.53892 7.63362 7.88415 7.92823 7.96230 8.31375 8.52841 8.94235 9.53174 11.02382 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020814 B = 0.005244 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.931563 B = 5338.133749 C = 6008.048031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.025 3.975 10 C -0.134 4.134 11 C 0.080 3.920 12 H 0.093 0.907 13 N -0.831 5.831 14 C 0.557 3.443 15 O -0.538 6.538 16 N -0.642 5.642 17 C 0.095 3.905 18 C -0.119 4.119 19 H 0.098 0.902 20 C -0.102 4.102 21 C -0.115 4.115 22 C -0.112 4.112 23 C -0.124 4.124 24 C 0.144 3.856 25 H 0.078 0.922 26 H 0.261 0.739 27 H 0.017 0.983 28 H 0.017 0.983 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.345 0.655 32 H 0.354 0.646 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.079 0.921 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.083 -13.622 -7.573 18.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.174 4.174 11 C -0.034 4.034 12 H 0.111 0.889 13 N -0.363 5.363 14 C 0.347 3.653 15 O -0.414 6.414 16 N -0.379 5.379 17 C -0.028 4.028 18 C -0.138 4.138 19 H 0.116 0.884 20 C -0.139 4.139 21 C -0.153 4.153 22 C -0.149 4.149 23 C -0.162 4.162 24 C 0.041 3.959 25 H 0.096 0.904 26 H 0.071 0.929 27 H 0.036 0.964 28 H 0.035 0.965 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.158 0.842 32 H 0.169 0.831 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.752 -14.500 -7.054 18.347 hybrid contribution 0.640 1.908 0.119 2.016 sum 9.392 -12.592 -6.936 17.172 Atomic orbital electron populations 1.69946 1.06025 1.26768 1.50481 1.25005 0.94850 0.99266 0.95134 0.86595 0.79881 0.83411 0.78150 1.20598 1.21138 1.19892 1.21173 0.92985 0.90874 1.51059 0.92758 1.19097 0.93709 0.91133 0.97276 1.22342 0.99796 0.93919 1.01301 1.21395 0.94511 0.92284 0.95260 0.88950 1.58736 1.18485 1.55887 1.03228 1.20408 0.80167 0.84265 0.80418 1.90615 1.60516 1.54170 1.36058 1.49593 1.45887 1.36260 1.06165 1.23299 0.96471 1.01602 0.81473 1.22787 0.95146 0.97342 0.98564 0.88416 1.21359 0.94985 0.96773 1.00817 1.21346 0.97447 0.99593 0.96890 1.21040 0.98016 0.98308 0.97576 1.20876 0.95987 0.98602 1.00719 1.21676 0.89744 0.92560 0.91937 0.90398 0.92885 0.96423 0.96458 0.92854 0.92657 0.84176 0.83081 0.89875 0.89508 0.91237 0.91066 0.91883 0.92144 0.92040 0.92207 0.90211 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.61 4.74 -27.88 -0.13 0.48 16 10 C -0.13 -2.70 4.78 -26.73 -0.13 -2.83 16 11 C 0.08 1.45 3.06 -68.86 -0.21 1.24 16 12 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 13 N -0.83 -15.07 8.94 -5.65 -0.05 -15.12 16 14 C 0.56 9.89 7.26 -10.98 -0.08 9.81 16 15 O -0.54 -11.00 15.63 5.55 0.09 -10.91 16 16 N -0.64 -9.11 3.41 -186.72 -0.64 -9.74 16 17 C 0.09 1.05 7.79 -11.02 -0.09 0.96 16 18 C -0.12 -1.14 4.52 -90.57 -0.41 -1.54 16 19 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 20 C -0.10 -1.07 5.58 -26.76 -0.15 -1.22 16 21 C -0.12 -1.15 5.86 -27.00 -0.16 -1.31 16 22 C -0.11 -1.32 5.87 -27.65 -0.16 -1.48 16 23 C -0.12 -1.46 5.40 -28.56 -0.15 -1.61 16 24 C 0.14 1.65 3.94 -77.43 -0.31 1.35 16 25 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.02 0.44 6.87 -51.92 -0.36 0.09 16 29 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.05 1.08 7.74 -51.93 -0.40 0.68 16 31 H 0.35 6.31 8.58 -39.29 -0.34 5.98 16 32 H 0.35 6.37 7.55 -39.29 -0.30 6.07 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 1.03 7.62 -51.93 -0.40 0.64 16 35 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 36 H 0.07 0.94 7.71 -51.93 -0.40 0.54 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 41 H 0.08 1.16 6.99 -51.93 -0.36 0.80 16 42 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 LS Contribution 332.29 15.07 5.01 5.01 Total: -1.00 -31.26 332.29 -9.43 -40.68 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -7.17 Total: 8.48 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -2.39 Total: -9.30 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: 0.05 Total: -50.23 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.26 -9.43 -40.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706866522.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.704 kcal (2) G-P(sol) polarization free energy of solvation -31.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds