Wall clock time and date at job start Mon Mar 30 2020 04:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00142 * 2 1 4 4 H 1.48503 * 109.46928 * 269.99740 * 3 2 1 5 5 H 1.48497 * 109.47130 * 29.99998 * 3 2 1 6 6 H 1.48499 * 109.47231 * 149.99984 * 3 2 1 7 7 C 1.37882 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00050 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99891 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47087 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47345 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47080 * 54.99155 * 11 10 9 13 13 N 1.46905 * 109.46631 * 294.99589 * 11 10 9 14 14 C 1.50700 * 109.47277 * 174.99661 * 11 10 9 15 15 O 1.21283 * 119.99803 * 99.99659 * 14 11 10 16 16 N 1.34777 * 119.99675 * 280.27534 * 14 11 10 17 17 C 1.47252 * 136.46869 * 359.71691 * 16 14 11 18 18 C 1.53995 * 87.66444 * 151.82126 * 17 16 14 19 19 H 1.09003 * 114.97333 * 141.29440 * 18 17 16 20 20 C 1.53027 * 111.64008 * 272.89337 * 18 17 16 21 21 C 1.52923 * 108.94630 * 140.49827 * 20 18 17 22 22 C 1.52546 * 109.49287 * 297.54850 * 21 20 18 23 23 C 1.51643 * 111.24356 * 62.90415 * 22 21 20 24 24 C 1.46559 * 136.46187 * 179.35972 * 16 14 11 25 25 H 1.08992 * 111.29009 * 96.07332 * 24 16 14 26 26 H 0.96995 * 120.00318 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.47199 * 59.99731 * 9 7 2 28 28 H 1.09008 * 109.46860 * 299.99618 * 9 7 2 29 29 H 1.09000 * 109.47628 * 59.99118 * 10 9 7 30 30 H 1.09003 * 109.46966 * 299.99465 * 10 9 7 31 31 H 1.00898 * 110.99843 * 299.99868 * 13 11 10 32 32 H 1.00899 * 110.99818 * 63.95660 * 13 11 10 33 33 H 1.08998 * 113.52361 * 266.52377 * 17 16 14 34 34 H 1.09003 * 113.51245 * 37.12565 * 17 16 14 35 35 H 1.09008 * 109.53699 * 260.82234 * 20 18 17 36 36 H 1.08997 * 109.54443 * 21.07773 * 20 18 17 37 37 H 1.09000 * 109.54154 * 177.39250 * 21 20 18 38 38 H 1.09002 * 109.04901 * 57.40696 * 21 20 18 39 39 H 1.08999 * 109.12760 * 302.44878 * 22 21 20 40 40 H 1.09009 * 109.07394 * 183.32448 * 22 21 20 41 41 H 1.09001 * 108.55160 * 191.44157 * 23 22 21 42 42 H 1.09007 * 108.42831 * 73.77516 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4801 -4.9872 -0.0020 12 1 0.7883 -5.0069 -0.8440 13 7 0.7279 -5.1187 1.2530 14 6 2.4548 -6.1299 -0.1257 15 8 2.7862 -6.7536 0.8603 16 7 2.9623 -6.4552 -1.3311 17 6 2.8237 -5.9693 -2.7142 18 6 4.2561 -6.4743 -2.9684 19 1 4.4166 -6.9308 -3.9451 20 6 5.3004 -5.4178 -2.6011 21 6 6.4888 -6.1070 -1.9292 22 6 6.0272 -6.7720 -0.6363 23 6 5.0071 -7.8597 -0.9116 24 6 3.9054 -7.4476 -1.8541 25 1 3.3844 -8.3234 -2.2407 26 1 -0.4850 0.8400 -0.0004 27 1 0.6246 -2.5563 -0.8919 28 1 0.6239 -2.5575 0.8881 29 1 2.8712 -3.6048 0.8889 30 1 2.8724 -3.6040 -0.8910 31 1 1.3475 -5.1031 2.0492 32 1 0.0231 -4.4007 1.3291 33 1 2.0661 -6.5023 -3.2887 34 1 2.7250 -4.8861 -2.7868 35 1 5.6304 -4.9023 -3.5031 36 1 4.8637 -4.6989 -1.9079 37 1 7.2591 -5.3691 -1.7051 38 1 6.8905 -6.8622 -2.6047 39 1 5.5800 -6.0190 0.0127 40 1 6.8895 -7.2100 -0.1334 41 1 4.5587 -8.1622 0.0347 42 1 5.5256 -8.7183 -1.3386 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706866522.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:42 Heat of formation + Delta-G solvation = -45.710688 kcal Electronic energy + Delta-G solvation = -21263.032742 eV Core-core repulsion = 18242.065560 eV Total energy + Delta-G solvation = -3020.967182 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.20244 -39.68317 -37.03703 -35.94145 -34.85480 -32.30359 -31.74448 -30.71684 -27.98247 -26.76655 -25.66966 -23.95075 -22.50186 -22.15491 -20.85443 -19.23021 -18.48642 -18.04089 -17.15789 -16.99690 -16.52705 -16.00771 -15.78301 -15.48008 -15.15488 -15.10148 -14.65713 -14.44472 -14.23765 -13.77322 -13.58371 -13.37486 -13.21815 -12.94219 -12.68619 -12.61529 -12.53975 -12.37868 -12.03150 -11.83048 -11.73506 -11.50111 -11.39067 -11.32402 -10.86270 -10.58968 -10.51852 -9.75454 -9.56100 -8.23532 -6.34491 1.37936 1.38960 1.49647 1.62720 1.84528 2.38274 3.09887 3.26504 3.46910 3.68436 3.80620 3.89800 4.03742 4.05316 4.16142 4.20288 4.33504 4.41523 4.50283 4.57918 4.62271 4.67192 4.75001 4.77296 4.86152 4.95458 5.01855 5.06214 5.07985 5.20246 5.28670 5.36541 5.41924 5.45576 5.58155 5.60382 5.76817 6.02923 6.18034 6.41280 6.76508 6.79950 7.20450 7.34764 8.87437 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020814 B = 0.005244 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.931563 B = 5338.133749 C = 6008.048031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.960 3.040 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.545 4.545 8 H 0.053 0.947 9 C 0.033 3.967 10 C -0.113 4.113 11 C 0.087 3.913 12 H 0.099 0.901 13 N -0.829 5.829 14 C 0.552 3.448 15 O -0.575 6.575 16 N -0.647 5.647 17 C 0.088 3.912 18 C -0.098 4.098 19 H 0.142 0.858 20 C -0.106 4.106 21 C -0.110 4.110 22 C -0.111 4.111 23 C -0.122 4.122 24 C 0.135 3.865 25 H 0.101 0.899 26 H 0.265 0.735 27 H 0.001 0.999 28 H 0.001 0.999 29 H 0.038 0.962 30 H 0.060 0.940 31 H 0.343 0.657 32 H 0.352 0.648 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.033 0.967 37 H 0.062 0.938 38 H 0.088 0.912 39 H 0.018 0.982 40 H 0.068 0.932 41 H 0.044 0.956 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.530 -14.285 -9.948 20.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.784 3.216 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.583 4.583 8 H 0.071 0.929 9 C -0.004 4.004 10 C -0.152 4.152 11 C -0.028 4.028 12 H 0.117 0.883 13 N -0.361 5.361 14 C 0.342 3.658 15 O -0.454 6.454 16 N -0.382 5.382 17 C -0.034 4.034 18 C -0.116 4.116 19 H 0.160 0.840 20 C -0.143 4.143 21 C -0.147 4.147 22 C -0.149 4.149 23 C -0.160 4.160 24 C 0.033 3.967 25 H 0.119 0.881 26 H 0.074 0.926 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.156 0.844 32 H 0.167 0.833 33 H 0.130 0.870 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.052 0.948 37 H 0.081 0.919 38 H 0.107 0.893 39 H 0.037 0.963 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.215 -15.172 -9.479 20.601 hybrid contribution 0.197 2.088 0.833 2.257 sum 10.411 -13.084 -8.647 18.824 Atomic orbital electron populations 1.70058 1.07523 1.27850 1.51185 1.25860 0.95721 1.02960 0.94578 0.85530 0.78572 0.78834 0.78637 1.19437 1.20669 1.19351 1.21567 0.93217 0.92378 1.51153 0.92910 1.18942 0.93895 0.91994 0.95572 1.22043 0.98634 0.93825 1.00743 1.21306 0.94565 0.91574 0.95394 0.88269 1.58750 1.18393 1.55626 1.03313 1.20165 0.80221 0.84071 0.81373 1.90591 1.61841 1.55382 1.37618 1.49720 1.45337 1.36889 1.06284 1.23633 0.98718 1.01409 0.79666 1.22779 0.93341 0.95968 0.99530 0.84042 1.21400 0.95428 0.96649 1.00832 1.21323 0.97196 1.00092 0.96108 1.21033 0.98185 0.97474 0.98163 1.20863 0.96173 0.99554 0.99443 1.22068 0.89235 0.93271 0.92173 0.88082 0.92643 0.98079 0.98065 0.94341 0.92158 0.84403 0.83256 0.87000 0.90768 0.89207 0.94764 0.91937 0.89343 0.96281 0.91326 0.93676 0.88597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.78 13.29 21.45 0.28 -54.49 16 2 C 0.01 0.42 5.46 84.66 0.46 0.88 16 3 Si 0.96 43.64 29.54 68.60 2.03 45.67 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.55 -30.53 9.11 25.60 0.23 -30.29 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 9 C 0.03 1.68 4.74 29.85 0.14 1.82 16 10 C -0.11 -4.71 4.78 30.59 0.15 -4.57 16 11 C 0.09 3.21 3.06 44.17 0.14 3.35 16 12 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 13 N -0.83 -31.14 8.94 -171.79 -1.54 -32.67 16 14 C 0.55 20.00 7.26 87.66 0.64 20.64 16 15 O -0.57 -24.40 15.63 -3.04 -0.05 -24.45 16 16 N -0.65 -17.85 3.41 -863.04 -2.94 -20.79 16 17 C 0.09 1.74 7.79 81.45 0.63 2.37 16 18 C -0.10 -1.50 4.52 -10.76 -0.05 -1.55 16 19 H 0.14 1.12 8.14 -2.39 -0.02 1.10 16 20 C -0.11 -1.98 5.58 30.58 0.17 -1.81 16 21 C -0.11 -1.94 5.86 30.42 0.18 -1.76 16 22 C -0.11 -2.55 5.87 30.00 0.18 -2.38 16 23 C -0.12 -2.71 5.40 29.41 0.16 -2.55 16 24 C 0.13 2.75 3.94 38.80 0.15 2.90 16 25 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 27 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 28 H 0.00 0.06 6.87 -2.38 -0.02 0.04 16 29 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.06 2.43 7.74 -2.39 -0.02 2.41 16 31 H 0.34 13.15 8.58 -89.70 -0.77 12.38 16 32 H 0.35 13.21 7.55 -89.69 -0.68 12.54 16 33 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.07 1.68 7.62 -2.39 -0.02 1.66 16 35 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.03 0.89 7.71 -2.39 -0.02 0.88 16 37 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 41 H 0.04 1.33 6.99 -2.39 -0.02 1.31 16 42 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -69.65 332.29 0.52 -69.13 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: -0.44 Total: 30.56 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: 3.18 Total: -12.95 kcal Atomic # 7 Polarization: -103.77 SS G_CDS: -4.19 Total: -107.96 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.05 Total: -24.45 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -69.65 0.52 -69.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706866522.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.419 kcal (2) G-P(sol) polarization free energy of solvation -69.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds