Wall clock time and date at job start Mon Mar 30 2020 05:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48497 * 109.46762 * 240.00249 * 3 2 1 5 5 H 1.48506 * 109.46725 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99904 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99868 * 89.99907 * 10 9 7 12 12 O 1.21289 * 120.00200 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00038 * 180.02562 * 11 10 9 14 14 H 1.09003 * 109.47504 * 60.00089 * 13 11 10 15 15 C 1.52994 * 109.47431 * 179.97438 * 13 11 10 16 16 C 1.53006 * 109.47606 * 179.97438 * 15 13 11 17 17 C 1.52996 * 109.46915 * 300.00544 * 16 15 13 18 18 H 1.08999 * 109.47304 * 299.99513 * 17 16 15 19 19 N 1.46906 * 109.46879 * 179.97438 * 17 16 15 20 20 C 1.52999 * 109.47175 * 59.99573 * 17 16 15 21 21 C 1.52996 * 109.47359 * 299.99698 * 20 17 16 22 22 C 1.46498 * 119.99755 * 270.00096 * 10 9 7 23 23 C 1.52996 * 117.50299 * 8.74397 * 22 10 9 24 24 C 1.52996 * 117.50195 * 300.08115 * 22 10 9 25 25 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 27 27 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 28 28 H 1.09000 * 109.47405 * 300.00123 * 15 13 11 29 29 H 1.08999 * 109.47194 * 59.99898 * 15 13 11 30 30 H 1.08999 * 109.46737 * 60.00405 * 16 15 13 31 31 H 1.08992 * 109.47308 * 179.97438 * 16 15 13 32 32 H 1.00902 * 110.99799 * 179.97438 * 19 17 16 33 33 H 1.00899 * 111.00037 * 303.94744 * 19 17 16 34 34 H 1.09003 * 109.47253 * 60.00520 * 20 17 16 35 35 H 1.09008 * 109.46554 * 179.97438 * 20 17 16 36 36 H 1.08999 * 109.47109 * 300.00054 * 21 20 17 37 37 H 1.08997 * 109.47037 * 179.97438 * 21 20 17 38 38 H 1.09002 * 115.54567 * 154.41151 * 22 10 9 39 39 H 1.09004 * 117.49609 * 0.02562 * 23 22 10 40 40 H 1.09000 * 117.50088 * 145.01927 * 23 22 10 41 41 H 1.08997 * 117.50149 * 214.98203 * 24 22 10 42 42 H 1.09001 * 117.49378 * 0.02562 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6409 -4.1249 1.1677 12 8 2.2465 -3.6642 2.2181 13 6 3.6206 -5.2700 1.1678 14 1 4.5332 -4.9675 0.6541 15 6 3.9524 -5.6573 2.6102 16 6 4.9466 -6.8203 2.6103 17 6 4.3282 -8.0198 1.8895 18 1 3.4158 -8.3219 2.4036 19 7 5.2830 -9.1363 1.8890 20 6 3.9965 -7.6325 0.4470 21 6 3.0023 -6.4695 0.4469 22 6 2.6790 -4.1694 -1.2682 23 6 2.3105 -3.4209 -2.5507 24 6 1.6332 -4.7532 -2.2202 25 1 -0.4849 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 4.3925 -4.8026 3.1239 29 1 3.0401 -5.9597 3.1243 30 1 5.8590 -6.5183 2.0962 31 1 5.1833 -7.0959 3.6379 32 1 4.8976 -9.9415 1.4186 33 1 6.1610 -8.8611 1.4748 34 1 4.9090 -7.3305 -0.0672 35 1 3.5563 -8.4873 -0.0667 36 1 2.0898 -6.7716 0.9610 37 1 2.7663 -6.1933 -0.5807 38 1 3.6537 -4.6560 -1.2318 39 1 1.7143 -2.5139 -2.4504 40 1 3.0426 -3.4153 -3.3582 41 1 1.9199 -5.6235 -2.8104 42 1 0.5909 -4.7226 -1.9026 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710851964.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:56 Heat of formation + Delta-G solvation = -25.806450 kcal Electronic energy + Delta-G solvation = -21285.971459 eV Core-core repulsion = 18265.867390 eV Total energy + Delta-G solvation = -3020.104069 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.00091 -38.00779 -36.73195 -33.64129 -33.14043 -31.95455 -30.74369 -28.72681 -26.93833 -23.42992 -22.78452 -22.36561 -21.92908 -21.15867 -19.97317 -18.24237 -16.87240 -16.39192 -16.07763 -15.53943 -15.16815 -14.43869 -14.41924 -14.17447 -13.99660 -13.87582 -13.11356 -12.85035 -12.55684 -12.24112 -12.14933 -11.79503 -11.43808 -11.22018 -11.19921 -11.06534 -10.98450 -10.81657 -10.63048 -10.50690 -10.34405 -10.19144 -10.09810 -10.05641 -9.51825 -8.89521 -8.68646 -8.43083 -7.52215 -6.03985 -4.08488 3.31721 3.34919 3.36385 3.40837 3.83654 4.30396 4.38424 4.46387 4.66195 4.72057 4.90410 5.14940 5.19797 5.22802 5.27769 5.30173 5.34568 5.42849 5.48097 5.49702 5.51654 5.78854 5.86484 5.96345 6.01019 6.05200 6.12868 6.15981 6.26566 6.40697 6.44497 6.51886 6.72562 6.96618 7.06427 7.24867 7.43881 7.54493 7.92402 8.23601 8.43653 8.90892 9.11115 9.56418 11.03840 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.026746 B = 0.005214 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.632484 B = 5369.177451 C = 5941.835641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.244 3.756 10 N -0.570 5.570 11 C 0.513 3.487 12 O -0.538 6.538 13 C -0.105 4.105 14 H 0.087 0.913 15 C -0.097 4.097 16 C -0.109 4.109 17 C 0.088 3.912 18 H 0.080 0.920 19 N -0.847 5.847 20 C -0.148 4.148 21 C -0.117 4.117 22 C 0.079 3.921 23 C -0.177 4.177 24 C -0.204 4.204 25 H 0.263 0.737 26 H 0.033 0.967 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.338 0.662 33 H 0.337 0.663 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.490 -15.854 -3.236 18.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.075 0.925 9 C 0.125 3.875 10 N -0.300 5.300 11 C 0.299 3.701 12 O -0.416 6.416 13 C -0.127 4.127 14 H 0.105 0.895 15 C -0.136 4.136 16 C -0.147 4.147 17 C -0.024 4.024 18 H 0.099 0.901 19 N -0.375 5.375 20 C -0.187 4.187 21 C -0.155 4.155 22 C -0.027 4.027 23 C -0.214 4.214 24 C -0.243 4.243 25 H 0.073 0.927 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.037 -15.435 -1.843 17.500 hybrid contribution 0.418 1.131 -1.281 1.759 sum 8.455 -14.304 -3.124 16.907 Atomic orbital electron populations 1.69923 1.05964 1.27082 1.50499 1.24921 0.94854 0.99135 0.95150 0.86578 0.79539 0.82809 0.78629 1.20255 1.21205 1.20210 1.21358 0.93275 0.90509 1.50880 0.92542 1.19283 0.87622 0.82258 0.98319 1.47740 1.45014 1.34245 1.02988 1.20282 0.82299 0.83683 0.83790 1.90670 1.58234 1.61868 1.30799 1.21322 0.98576 0.94462 0.98331 0.89473 1.21303 0.99610 0.97706 0.94942 1.21551 0.98263 0.94001 1.00906 1.21538 0.95586 0.90817 0.94430 0.90138 1.58958 1.07056 1.07978 1.63482 1.22377 0.99737 0.98554 0.98082 1.21698 0.98348 0.93561 1.01895 1.21494 0.96713 1.01711 0.82824 1.23389 1.03627 0.97025 0.97381 1.23432 0.99355 0.97295 1.04235 0.92692 0.94868 0.93939 0.90978 0.91182 0.92295 0.91155 0.84951 0.85041 0.92082 0.92096 0.91565 0.89904 0.86596 0.86330 0.89006 0.89049 0.88698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.52 -14.69 9.18 -34.44 -0.32 -15.00 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.24 6.35 4.46 -5.19 -0.02 6.32 16 10 N -0.57 -12.05 2.79 -167.47 -0.47 -12.52 16 11 C 0.51 10.69 7.07 -10.99 -0.08 10.62 16 12 O -0.54 -13.67 15.56 5.55 0.09 -13.58 16 13 C -0.11 -1.57 1.74 -91.78 -0.16 -1.73 16 14 H 0.09 1.21 7.57 -51.93 -0.39 0.81 16 15 C -0.10 -1.38 4.49 -26.73 -0.12 -1.50 16 16 C -0.11 -1.21 5.46 -26.73 -0.15 -1.35 16 17 C 0.09 0.87 3.25 -67.71 -0.22 0.65 16 18 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 19 N -0.85 -7.20 9.25 -4.67 -0.04 -7.24 16 20 C -0.15 -1.40 5.49 -26.73 -0.15 -1.55 16 21 C -0.12 -1.43 4.82 -26.73 -0.13 -1.56 16 22 C 0.08 1.29 4.33 -67.94 -0.29 1.00 16 23 C -0.18 -2.86 9.72 -26.70 -0.26 -3.12 16 24 C -0.20 -2.93 9.31 -26.70 -0.25 -3.18 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 26 H 0.03 0.87 6.32 -51.93 -0.33 0.54 16 27 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 28 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 29 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.34 2.38 9.04 -39.29 -0.36 2.02 16 33 H 0.34 2.50 8.98 -39.29 -0.35 2.15 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.08 1.00 4.41 -51.93 -0.23 0.77 16 38 H 0.12 1.59 6.16 -51.93 -0.32 1.27 16 39 H 0.12 2.36 6.29 -51.93 -0.33 2.04 16 40 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.09 1.51 8.12 -51.93 -0.42 1.09 16 LS Contribution 328.31 15.07 4.95 4.95 Total: -1.00 -31.96 328.31 -8.88 -40.84 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -6.88 Total: 5.22 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -2.24 Total: -8.77 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 0.23 Total: -45.54 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.09 Total: -13.58 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.96 -8.88 -40.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710851964.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.030 kcal (2) G-P(sol) polarization free energy of solvation -31.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds