Wall clock time and date at job start Mon Mar 30 2020 05:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48497 * 109.46762 * 240.00249 * 3 2 1 5 5 H 1.48506 * 109.46725 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99904 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99868 * 89.99907 * 10 9 7 12 12 O 1.21289 * 120.00200 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00038 * 180.02562 * 11 10 9 14 14 H 1.09003 * 109.47504 * 60.00089 * 13 11 10 15 15 C 1.52994 * 109.47431 * 179.97438 * 13 11 10 16 16 C 1.53006 * 109.47606 * 179.97438 * 15 13 11 17 17 C 1.52996 * 109.46915 * 300.00544 * 16 15 13 18 18 H 1.08999 * 109.47304 * 299.99513 * 17 16 15 19 19 N 1.46906 * 109.46879 * 179.97438 * 17 16 15 20 20 C 1.52999 * 109.47175 * 59.99573 * 17 16 15 21 21 C 1.52996 * 109.47359 * 299.99698 * 20 17 16 22 22 C 1.46498 * 119.99755 * 270.00096 * 10 9 7 23 23 C 1.52996 * 117.50299 * 8.74397 * 22 10 9 24 24 C 1.52996 * 117.50195 * 300.08115 * 22 10 9 25 25 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 27 27 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 28 28 H 1.09000 * 109.47405 * 300.00123 * 15 13 11 29 29 H 1.08999 * 109.47194 * 59.99898 * 15 13 11 30 30 H 1.08999 * 109.46737 * 60.00405 * 16 15 13 31 31 H 1.08992 * 109.47308 * 179.97438 * 16 15 13 32 32 H 1.00902 * 110.99799 * 179.97438 * 19 17 16 33 33 H 1.00899 * 111.00037 * 303.94744 * 19 17 16 34 34 H 1.09003 * 109.47253 * 60.00520 * 20 17 16 35 35 H 1.09008 * 109.46554 * 179.97438 * 20 17 16 36 36 H 1.08999 * 109.47109 * 300.00054 * 21 20 17 37 37 H 1.08997 * 109.47037 * 179.97438 * 21 20 17 38 38 H 1.09002 * 115.54567 * 154.41151 * 22 10 9 39 39 H 1.09004 * 117.49609 * 0.02562 * 23 22 10 40 40 H 1.09000 * 117.50088 * 145.01927 * 23 22 10 41 41 H 1.08997 * 117.50149 * 214.98203 * 24 22 10 42 42 H 1.09001 * 117.49378 * 0.02562 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6409 -4.1249 1.1677 12 8 2.2465 -3.6642 2.2181 13 6 3.6206 -5.2700 1.1678 14 1 4.5332 -4.9675 0.6541 15 6 3.9524 -5.6573 2.6102 16 6 4.9466 -6.8203 2.6103 17 6 4.3282 -8.0198 1.8895 18 1 3.4158 -8.3219 2.4036 19 7 5.2830 -9.1363 1.8890 20 6 3.9965 -7.6325 0.4470 21 6 3.0023 -6.4695 0.4469 22 6 2.6790 -4.1694 -1.2682 23 6 2.3105 -3.4209 -2.5507 24 6 1.6332 -4.7532 -2.2202 25 1 -0.4849 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 4.3925 -4.8026 3.1239 29 1 3.0401 -5.9597 3.1243 30 1 5.8590 -6.5183 2.0962 31 1 5.1833 -7.0959 3.6379 32 1 4.8976 -9.9415 1.4186 33 1 6.1610 -8.8611 1.4748 34 1 4.9090 -7.3305 -0.0672 35 1 3.5563 -8.4873 -0.0667 36 1 2.0898 -6.7716 0.9610 37 1 2.7663 -6.1933 -0.5807 38 1 3.6537 -4.6560 -1.2318 39 1 1.7143 -2.5139 -2.4504 40 1 3.0426 -3.4153 -3.3582 41 1 1.9199 -5.6235 -2.8104 42 1 0.5909 -4.7226 -1.9026 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710851964.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:56 Heat of formation + Delta-G solvation = -48.095352 kcal Electronic energy + Delta-G solvation = -21286.937978 eV Core-core repulsion = 18265.867390 eV Total energy + Delta-G solvation = -3021.070589 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.42332 -39.14331 -38.24418 -35.30848 -34.49181 -33.73398 -31.75380 -30.10559 -28.55541 -25.29927 -23.94894 -23.59258 -23.12825 -22.42239 -20.95583 -19.76888 -18.64005 -18.26263 -17.24261 -16.81840 -16.43061 -16.20666 -15.65288 -15.50323 -15.15304 -15.05760 -14.55204 -14.08518 -13.85975 -13.77238 -13.39831 -13.23894 -13.10536 -12.84557 -12.64817 -12.30529 -12.21789 -12.20905 -12.12595 -12.10418 -11.96310 -11.55942 -11.37097 -11.33252 -11.10327 -10.65788 -10.44030 -9.46995 -9.25137 -8.23154 -6.37961 1.34092 1.38437 1.45638 1.76379 2.22430 2.40721 3.05461 3.06771 3.45298 3.72979 3.75224 3.83964 3.92879 4.03454 4.16543 4.20413 4.27444 4.35912 4.46009 4.51253 4.56582 4.81979 4.84792 4.87826 4.97816 5.01399 5.09911 5.15105 5.17428 5.21504 5.25018 5.26503 5.40372 5.40591 5.50475 5.54837 5.82431 6.04733 6.33751 6.68192 6.72428 6.79266 7.26951 7.46876 8.83286 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.026746 B = 0.005214 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.632484 B = 5369.177451 C = 5941.835641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.259 1.259 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.534 4.534 8 H 0.051 0.949 9 C 0.263 3.737 10 N -0.577 5.577 11 C 0.499 3.501 12 O -0.599 6.599 13 C -0.091 4.091 14 H 0.110 0.890 15 C -0.095 4.095 16 C -0.099 4.099 17 C 0.092 3.908 18 H 0.067 0.933 19 N -0.849 5.849 20 C -0.136 4.136 21 C -0.111 4.111 22 C 0.061 3.939 23 C -0.186 4.186 24 C -0.178 4.178 25 H 0.267 0.733 26 H 0.025 0.975 27 H -0.010 1.010 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.349 0.651 33 H 0.347 0.653 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.049 0.951 37 H 0.091 0.909 38 H 0.156 0.844 39 H 0.072 0.928 40 H 0.127 0.873 41 H 0.140 0.860 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.179 -17.718 -5.312 21.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.183 1.183 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.573 4.573 8 H 0.069 0.931 9 C 0.142 3.858 10 N -0.305 5.305 11 C 0.289 3.711 12 O -0.481 6.481 13 C -0.112 4.112 14 H 0.128 0.872 15 C -0.133 4.133 16 C -0.137 4.137 17 C -0.020 4.020 18 H 0.085 0.915 19 N -0.379 5.379 20 C -0.176 4.176 21 C -0.149 4.149 22 C -0.043 4.043 23 C -0.224 4.224 24 C -0.216 4.216 25 H 0.075 0.925 26 H 0.043 0.957 27 H 0.008 0.992 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.163 0.837 33 H 0.160 0.840 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.109 0.891 38 H 0.173 0.827 39 H 0.091 0.909 40 H 0.145 0.855 41 H 0.158 0.842 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.749 -17.342 -3.968 20.785 hybrid contribution -0.483 1.698 -0.614 1.869 sum 10.266 -15.644 -4.582 19.264 Atomic orbital electron populations 1.70049 1.07560 1.28150 1.51154 1.25834 0.95757 1.02953 0.94520 0.85504 0.78350 0.78209 0.78986 1.18337 1.20338 1.20462 1.21576 0.93028 0.91736 1.50920 0.93107 1.18673 0.88037 0.83888 0.95242 1.47729 1.44158 1.33155 1.05474 1.21491 0.82465 0.84519 0.82654 1.90629 1.60527 1.63994 1.32930 1.21323 0.97450 0.92955 0.99460 0.87171 1.21254 0.99542 0.98344 0.94188 1.21452 0.97721 0.93083 1.01463 1.21389 0.95318 0.90702 0.94594 0.91495 1.58872 1.07159 1.07721 1.64141 1.22316 0.99603 0.97710 0.97929 1.21677 0.98470 0.93315 1.01446 1.22003 0.99056 1.02639 0.80563 1.23359 1.04444 0.96164 0.98400 1.23480 0.97578 0.97884 1.02655 0.92455 0.95724 0.99219 0.93153 0.93289 0.90674 0.91331 0.83706 0.83972 0.90192 0.90089 0.93229 0.89062 0.82687 0.90942 0.85454 0.84234 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.12 13.29 21.45 0.28 -56.84 16 2 C 0.01 0.48 5.46 84.65 0.46 0.94 16 3 Si 0.97 45.60 29.54 68.60 2.03 47.63 16 4 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 7 C -0.53 -31.29 9.18 25.60 0.24 -31.05 16 8 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 9 C 0.26 14.52 4.46 85.63 0.38 14.91 16 10 N -0.58 -25.04 2.79 -802.13 -2.24 -27.28 16 11 C 0.50 21.55 7.07 87.66 0.62 22.17 16 12 O -0.60 -32.58 15.56 -3.06 -0.05 -32.63 16 13 C -0.09 -2.61 1.74 -11.54 -0.02 -2.63 16 14 H 0.11 2.71 7.57 -2.39 -0.02 2.69 16 15 C -0.09 -2.69 4.49 30.59 0.14 -2.55 16 16 C -0.10 -2.00 5.46 30.60 0.17 -1.83 16 17 C 0.09 1.55 3.25 44.91 0.15 1.70 16 18 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 19 N -0.85 -11.38 9.25 -168.68 -1.56 -12.94 16 20 C -0.14 -2.00 5.49 30.59 0.17 -1.83 16 21 C -0.11 -2.44 4.82 30.59 0.15 -2.29 16 22 C 0.06 1.90 4.33 44.99 0.19 2.09 16 23 C -0.19 -5.76 9.72 30.62 0.30 -5.46 16 24 C -0.18 -4.65 9.31 30.62 0.28 -4.37 16 25 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 26 H 0.02 1.39 6.32 -2.39 -0.02 1.37 16 27 H -0.01 -0.67 7.42 -2.38 -0.02 -0.69 16 28 H 0.05 1.62 8.10 -2.39 -0.02 1.60 16 29 H 0.05 1.57 8.10 -2.39 -0.02 1.55 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.35 3.58 9.04 -89.69 -0.81 2.77 16 33 H 0.35 3.68 8.98 -89.69 -0.81 2.87 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16 37 H 0.09 1.86 4.41 -2.39 -0.01 1.85 16 38 H 0.16 3.57 6.16 -2.39 -0.01 3.56 16 39 H 0.07 2.97 6.29 -2.38 -0.02 2.95 16 40 H 0.13 3.00 8.14 -2.39 -0.02 2.98 16 41 H 0.14 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.07 2.25 8.12 -2.39 -0.02 2.23 16 Total: -1.00 -75.80 328.31 1.09 -74.71 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -0.59 Total: 17.57 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: 3.22 Total: -10.21 kcal Atomic # 7 Polarization: -93.55 SS G_CDS: -3.52 Total: -97.06 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -0.05 Total: -32.63 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -75.80 1.09 -74.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710851964.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.615 kcal (2) G-P(sol) polarization free energy of solvation -75.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds