Wall clock time and date at job start Mon Mar 30 2020 04:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 119.99759 * 2 1 4 4 H 1.48504 * 109.46948 * 270.00235 * 3 2 1 5 5 H 1.48496 * 109.47251 * 29.99926 * 3 2 1 6 6 H 1.48498 * 109.46995 * 150.00097 * 3 2 1 7 7 C 1.37870 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00018 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00172 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47355 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47040 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47093 * 180.02562 * 11 10 9 13 13 C 1.34772 * 120.00042 * 179.97438 * 12 11 10 14 14 O 1.21282 * 120.00226 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00260 * 179.97438 * 13 12 11 16 16 C 1.50653 * 110.01015 * 286.20873 * 15 13 12 17 17 C 1.54906 * 104.74324 * 279.45497 * 16 15 13 18 18 C 1.56271 * 105.71944 * 352.17755 * 17 16 15 19 19 C 1.51132 * 101.83078 * 335.63543 * 18 17 16 20 20 H 1.08993 * 109.38828 * 290.28738 * 19 18 17 21 21 N 1.44520 * 125.52182 * 156.17816 * 19 18 17 22 22 C 1.50152 * 102.97521 * 202.03098 * 21 19 18 23 23 C 1.50965 * 110.00384 * 66.75451 * 15 13 12 24 24 H 0.97001 * 120.00319 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.46893 * 60.00396 * 9 7 2 26 26 H 1.09001 * 109.47387 * 300.00494 * 9 7 2 27 27 H 1.09005 * 109.46774 * 60.00645 * 10 9 7 28 28 H 1.08999 * 109.47389 * 299.99996 * 10 9 7 29 29 H 1.09001 * 109.47359 * 300.00149 * 11 10 9 30 30 H 1.08998 * 109.47235 * 60.00245 * 11 10 9 31 31 H 0.97001 * 119.99910 * 0.02562 * 12 11 10 32 32 H 1.08995 * 110.46462 * 37.16657 * 16 15 13 33 33 H 1.08994 * 110.46596 * 159.75521 * 16 15 13 34 34 H 1.08997 * 109.81313 * 233.34974 * 17 16 15 35 35 H 1.08999 * 110.73237 * 111.48686 * 17 16 15 36 36 H 1.09001 * 110.95184 * 217.50160 * 18 17 16 37 37 H 1.08999 * 110.98622 * 93.78989 * 18 17 16 38 38 H 1.00900 * 111.00154 * 320.87926 * 21 19 18 39 39 H 1.09004 * 110.08969 * 267.77758 * 22 21 19 40 40 H 1.09001 * 110.08605 * 146.20242 * 22 21 19 41 41 H 1.09006 * 110.72186 * 200.89115 * 23 15 13 42 42 H 1.09002 * 110.72695 * 323.99747 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4324 -6.1006 -0.0006 13 6 1.9832 -7.3712 -0.0005 14 8 0.7908 -7.5929 -0.0004 15 6 2.9625 -8.5167 -0.0004 16 6 3.5978 -8.6519 -1.3597 17 6 2.5530 -9.4183 -2.2087 18 6 1.4373 -9.8613 -1.2082 19 6 2.1887 -9.8858 0.1029 20 1 2.8978 -10.7135 0.0981 21 7 1.5948 -9.7523 1.4136 22 6 2.7466 -9.2932 2.2604 23 6 3.7237 -8.5453 1.3030 24 1 -0.4851 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.8720 -3.6043 0.8896 28 1 2.8721 -3.6043 -0.8905 29 1 0.8534 -5.0451 0.8886 30 1 0.8541 -5.0446 -0.8914 31 1 3.3861 -5.9233 0.0005 32 1 3.7710 -7.6694 -1.7988 33 1 4.5318 -9.2093 -1.2901 34 1 3.0174 -10.2925 -2.6650 35 1 2.1322 -8.7717 -2.9787 36 1 1.0594 -10.8523 -1.4596 37 1 0.6269 -9.1329 -1.1797 38 1 0.8547 -9.0665 1.4072 39 1 3.2465 -10.1514 2.7097 40 1 2.3931 -8.6160 3.0380 41 1 4.6559 -9.0995 1.1931 42 1 3.9177 -7.5334 1.6587 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711237402.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:26 Heat of formation + Delta-G solvation = -40.176167 kcal Electronic energy + Delta-G solvation = -20821.786971 eV Core-core repulsion = 17801.059784 eV Total energy + Delta-G solvation = -3020.727187 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.78283 -38.02509 -35.45686 -34.89352 -33.47260 -31.77908 -30.55364 -27.51574 -26.99494 -26.53610 -23.59841 -21.91145 -21.72738 -20.83458 -20.34664 -19.10499 -16.84116 -16.54866 -16.16419 -15.71414 -15.55664 -15.09488 -14.68154 -14.50379 -13.97123 -13.79286 -13.51465 -13.12278 -12.69625 -12.50641 -12.32144 -11.88581 -11.84622 -11.74342 -11.41485 -11.38908 -10.94219 -10.90825 -10.78217 -10.64431 -10.52657 -10.51088 -9.91981 -9.72882 -9.34367 -9.15071 -8.84791 -8.61959 -8.40763 -6.05194 -4.08649 2.67236 3.21639 3.28303 3.34905 3.37610 3.58214 4.40532 4.43337 4.48338 4.59693 4.80781 4.90323 4.98878 5.04413 5.10719 5.21296 5.30638 5.44893 5.53939 5.61252 5.62189 5.67224 5.69666 5.71071 5.79154 5.85405 5.90780 6.08554 6.09852 6.26338 6.44059 6.53116 6.68283 6.76636 6.94495 7.38659 7.58936 7.62274 7.71039 7.92977 8.30051 8.34892 8.97881 9.55857 11.06069 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.035313 B = 0.003524 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.720067 B = 7944.637272 C = 8030.478934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.116 3.884 12 N -0.720 5.720 13 C 0.525 3.475 14 O -0.541 6.541 15 C -0.151 4.151 16 C -0.098 4.098 17 C -0.121 4.121 18 C -0.129 4.129 19 C 0.093 3.907 20 H 0.087 0.913 21 N -0.659 5.659 22 C 0.038 3.962 23 C -0.130 4.130 24 H 0.261 0.739 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.398 0.602 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.101 0.899 38 H 0.354 0.646 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.731 -19.982 -0.457 21.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.158 4.158 11 C -0.007 4.007 12 N -0.369 5.369 13 C 0.311 3.689 14 O -0.419 6.419 15 C -0.156 4.156 16 C -0.137 4.137 17 C -0.159 4.159 18 C -0.167 4.167 19 C -0.019 4.019 20 H 0.105 0.895 21 N -0.290 5.290 22 C -0.092 4.092 23 C -0.170 4.170 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.232 0.768 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.120 0.880 38 H 0.176 0.824 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.638 -20.713 -0.232 22.078 hybrid contribution 1.178 2.142 -0.321 2.465 sum 8.816 -18.572 -0.553 20.566 Atomic orbital electron populations 1.69962 1.06072 1.26740 1.50464 1.25025 0.94854 0.99314 0.95212 0.86581 0.79806 0.83409 0.78123 1.20633 1.21161 1.19885 1.21191 0.92973 0.90933 1.51083 0.92671 1.19025 0.93820 0.90856 0.97641 1.21888 0.99766 0.93363 1.00825 1.21668 0.91866 0.85148 1.01980 1.46205 1.10814 1.05877 1.74041 1.20299 0.89199 0.83907 0.75510 1.90563 1.16841 1.84281 1.50248 1.22399 0.98741 0.97743 0.96733 1.21377 0.98527 1.01403 0.92352 1.22738 0.95417 0.99803 0.97972 1.22253 0.99169 1.02787 0.92501 1.22407 0.95595 0.93602 0.90284 0.89532 1.62625 1.09242 1.49689 1.07416 1.23650 0.90903 0.98421 0.96193 1.22226 0.99143 1.01992 0.93602 0.92886 0.96294 0.96290 0.92774 0.92773 0.91765 0.91738 0.76848 0.91350 0.90393 0.91416 0.91296 0.91440 0.88038 0.82413 0.90091 0.91240 0.90072 0.90729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.29 55.43 0.74 -25.95 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 11 C 0.12 1.99 5.67 -4.04 -0.02 1.97 16 12 N -0.72 -9.96 5.34 -60.29 -0.32 -10.28 16 13 C 0.52 7.30 5.27 -10.99 -0.06 7.24 16 14 O -0.54 -9.16 11.81 5.56 0.07 -9.09 16 15 C -0.15 -1.60 0.98 -155.34 -0.15 -1.75 16 16 C -0.10 -0.90 6.06 -26.90 -0.16 -1.06 16 17 C -0.12 -1.15 6.80 -23.97 -0.16 -1.31 16 18 C -0.13 -1.46 6.33 -25.92 -0.16 -1.62 16 19 C 0.09 1.04 2.95 -67.41 -0.20 0.84 16 20 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 21 N -0.66 -8.11 7.53 -102.49 -0.77 -8.88 16 22 C 0.04 0.38 7.45 -0.45 0.00 0.38 16 23 C -0.13 -1.19 6.26 -26.20 -0.16 -1.36 16 24 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.40 4.61 8.38 -40.82 -0.34 4.27 16 32 H 0.07 0.65 7.96 -51.93 -0.41 0.24 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.10 1.43 5.58 -51.93 -0.29 1.14 16 38 H 0.35 5.08 6.32 -39.29 -0.25 4.83 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.69 7.70 -51.93 -0.40 0.29 16 LS Contribution 327.39 15.07 4.93 4.93 Total: -1.00 -30.50 327.39 -9.31 -39.82 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -7.15 Total: 5.09 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -1.78 Total: -11.97 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: -0.36 Total: -45.10 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.07 Total: -9.09 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.50 -9.31 -39.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711237402.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.360 kcal (2) G-P(sol) polarization free energy of solvation -30.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds