Wall clock time and date at job start Mon Mar 30 2020 04:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 119.99759 * 2 1 4 4 H 1.48504 * 109.46948 * 270.00235 * 3 2 1 5 5 H 1.48496 * 109.47251 * 29.99926 * 3 2 1 6 6 H 1.48498 * 109.46995 * 150.00097 * 3 2 1 7 7 C 1.37870 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00018 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00172 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47355 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47040 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47093 * 180.02562 * 11 10 9 13 13 C 1.34772 * 120.00042 * 179.97438 * 12 11 10 14 14 O 1.21282 * 120.00226 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00260 * 179.97438 * 13 12 11 16 16 C 1.50653 * 110.01015 * 286.20873 * 15 13 12 17 17 C 1.54906 * 104.74324 * 279.45497 * 16 15 13 18 18 C 1.56271 * 105.71944 * 352.17755 * 17 16 15 19 19 C 1.51132 * 101.83078 * 335.63543 * 18 17 16 20 20 H 1.08993 * 109.38828 * 290.28738 * 19 18 17 21 21 N 1.44520 * 125.52182 * 156.17816 * 19 18 17 22 22 C 1.50152 * 102.97521 * 202.03098 * 21 19 18 23 23 C 1.50965 * 110.00384 * 66.75451 * 15 13 12 24 24 H 0.97001 * 120.00319 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.46893 * 60.00396 * 9 7 2 26 26 H 1.09001 * 109.47387 * 300.00494 * 9 7 2 27 27 H 1.09005 * 109.46774 * 60.00645 * 10 9 7 28 28 H 1.08999 * 109.47389 * 299.99996 * 10 9 7 29 29 H 1.09001 * 109.47359 * 300.00149 * 11 10 9 30 30 H 1.08998 * 109.47235 * 60.00245 * 11 10 9 31 31 H 0.97001 * 119.99910 * 0.02562 * 12 11 10 32 32 H 1.08995 * 110.46462 * 37.16657 * 16 15 13 33 33 H 1.08994 * 110.46596 * 159.75521 * 16 15 13 34 34 H 1.08997 * 109.81313 * 233.34974 * 17 16 15 35 35 H 1.08999 * 110.73237 * 111.48686 * 17 16 15 36 36 H 1.09001 * 110.95184 * 217.50160 * 18 17 16 37 37 H 1.08999 * 110.98622 * 93.78989 * 18 17 16 38 38 H 1.00900 * 111.00154 * 320.87926 * 21 19 18 39 39 H 1.09004 * 110.08969 * 267.77758 * 22 21 19 40 40 H 1.09001 * 110.08605 * 146.20242 * 22 21 19 41 41 H 1.09006 * 110.72186 * 200.89115 * 23 15 13 42 42 H 1.09002 * 110.72695 * 323.99747 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4324 -6.1006 -0.0006 13 6 1.9832 -7.3712 -0.0005 14 8 0.7908 -7.5929 -0.0004 15 6 2.9625 -8.5167 -0.0004 16 6 3.5978 -8.6519 -1.3597 17 6 2.5530 -9.4183 -2.2087 18 6 1.4373 -9.8613 -1.2082 19 6 2.1887 -9.8858 0.1029 20 1 2.8978 -10.7135 0.0981 21 7 1.5948 -9.7523 1.4136 22 6 2.7466 -9.2932 2.2604 23 6 3.7237 -8.5453 1.3030 24 1 -0.4851 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.8720 -3.6043 0.8896 28 1 2.8721 -3.6043 -0.8905 29 1 0.8534 -5.0451 0.8886 30 1 0.8541 -5.0446 -0.8914 31 1 3.3861 -5.9233 0.0005 32 1 3.7710 -7.6694 -1.7988 33 1 4.5318 -9.2093 -1.2901 34 1 3.0174 -10.2925 -2.6650 35 1 2.1322 -8.7717 -2.9787 36 1 1.0594 -10.8523 -1.4596 37 1 0.6269 -9.1329 -1.1797 38 1 0.8547 -9.0665 1.4072 39 1 3.2465 -10.1514 2.7097 40 1 2.3931 -8.6160 3.0380 41 1 4.6559 -9.0995 1.1931 42 1 3.9177 -7.5334 1.6587 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711237402.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:26 Heat of formation + Delta-G solvation = -61.457094 kcal Electronic energy + Delta-G solvation = -20822.709781 eV Core-core repulsion = 17801.059784 eV Total energy + Delta-G solvation = -3021.649997 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.71629 -39.14608 -36.93035 -35.68399 -35.28802 -33.34210 -31.72576 -28.80835 -27.92111 -27.72503 -25.27120 -23.13956 -22.52134 -22.35756 -21.31876 -20.21005 -18.57042 -17.75647 -17.20262 -16.96303 -16.65120 -16.43644 -16.18124 -15.81064 -15.02636 -14.74069 -14.55835 -14.30862 -14.00050 -13.78725 -13.64549 -13.39918 -13.33576 -12.76778 -12.63313 -12.56499 -12.40856 -12.19662 -12.14796 -11.72569 -11.67169 -11.58234 -11.33949 -11.31259 -11.23313 -10.57742 -10.54197 -10.11541 -9.51497 -8.21546 -6.33495 1.40664 1.41960 1.52983 1.57424 2.10863 2.40918 2.72672 3.12338 3.53988 3.68556 3.77926 4.00122 4.05022 4.14768 4.16496 4.22604 4.28226 4.31914 4.46906 4.49890 4.68988 4.77758 4.85859 4.89162 4.91610 4.95471 4.97393 5.05476 5.11459 5.12607 5.17085 5.27460 5.37532 5.47004 5.51019 5.66468 5.81085 5.85990 6.19350 6.36300 6.51811 6.83884 7.21655 7.36522 8.90585 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.035313 B = 0.003524 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.720067 B = 7944.637272 C = 8030.478934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.024 3.976 10 C -0.101 4.101 11 C 0.132 3.868 12 N -0.712 5.712 13 C 0.519 3.481 14 O -0.575 6.575 15 C -0.139 4.139 16 C -0.096 4.096 17 C -0.118 4.118 18 C -0.134 4.134 19 C 0.089 3.911 20 H 0.107 0.893 21 N -0.675 5.675 22 C 0.034 3.966 23 C -0.125 4.125 24 H 0.263 0.737 25 H -0.009 1.009 26 H -0.009 1.009 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.412 0.588 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.338 0.662 39 H 0.099 0.901 40 H 0.060 0.940 41 H 0.111 0.889 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.020 -20.780 -0.568 24.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.085 0.915 9 C -0.014 4.014 10 C -0.139 4.139 11 C 0.008 3.992 12 N -0.362 5.362 13 C 0.307 3.693 14 O -0.455 6.455 15 C -0.144 4.144 16 C -0.134 4.134 17 C -0.157 4.157 18 C -0.172 4.172 19 C -0.023 4.023 20 H 0.125 0.875 21 N -0.304 5.304 22 C -0.095 4.095 23 C -0.164 4.164 24 H 0.072 0.928 25 H 0.009 0.991 26 H 0.010 0.990 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.249 0.751 32 H 0.084 0.916 33 H 0.127 0.873 34 H 0.111 0.889 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.157 0.843 39 H 0.117 0.883 40 H 0.079 0.921 41 H 0.130 0.870 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.976 -21.537 -0.343 24.175 hybrid contribution 0.060 2.331 -0.279 2.348 sum 11.036 -19.206 -0.622 22.160 Atomic orbital electron populations 1.70110 1.07983 1.27841 1.51613 1.26024 0.95730 1.03579 0.94693 0.85412 0.78703 0.78229 0.78488 1.19789 1.21022 1.18365 1.21669 0.93733 0.91988 1.50601 0.91542 1.18937 0.94418 0.93038 0.94978 1.21585 0.98400 0.91855 1.02011 1.21201 0.91932 0.85648 1.00449 1.45987 1.10966 1.05128 1.74153 1.21056 0.89472 0.84465 0.74286 1.90572 1.18766 1.84759 1.51393 1.22402 0.98014 0.95552 0.98415 1.21449 0.99410 1.01731 0.90805 1.22743 0.94945 1.00646 0.97318 1.22224 0.98983 1.02200 0.93751 1.22529 0.95755 0.94413 0.89596 0.87479 1.62676 1.09833 1.49309 1.08581 1.23768 0.90539 0.99186 0.96038 1.22259 0.99746 1.02400 0.91964 0.92784 0.99071 0.99045 0.91444 0.91468 0.93390 0.93449 0.75127 0.91636 0.87270 0.88918 0.92547 0.90659 0.91564 0.84276 0.88294 0.92083 0.87047 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.13 13.29 21.44 0.28 -56.84 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.32 16 3 Si 0.97 43.56 29.54 68.60 2.03 45.59 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 7 C -0.54 -30.16 9.11 25.60 0.23 -29.93 16 8 H 0.07 3.47 7.74 -2.91 -0.02 3.44 16 9 C 0.02 1.25 4.97 29.85 0.15 1.40 16 10 C -0.10 -3.85 5.27 30.60 0.16 -3.69 16 11 C 0.13 4.62 5.67 86.38 0.49 5.11 16 12 N -0.71 -19.17 5.34 -463.06 -2.47 -21.64 16 13 C 0.52 14.26 5.27 87.66 0.46 14.72 16 14 O -0.57 -20.20 11.81 -3.03 -0.04 -20.24 16 15 C -0.14 -2.64 0.98 -52.72 -0.05 -2.69 16 16 C -0.10 -1.45 6.06 30.48 0.18 -1.26 16 17 C -0.12 -2.00 6.80 32.38 0.22 -1.78 16 18 C -0.13 -2.93 6.33 31.12 0.20 -2.73 16 19 C 0.09 1.82 2.95 46.38 0.14 1.96 16 20 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 21 N -0.67 -16.15 7.53 -478.17 -3.60 -19.75 16 22 C 0.03 0.61 7.45 86.67 0.65 1.26 16 23 C -0.12 -1.89 6.26 30.94 0.19 -1.70 16 24 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 25 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 26 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 27 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 28 H 0.07 2.40 8.14 -2.39 -0.02 2.39 16 29 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.41 8.70 8.38 -92.71 -0.78 7.92 16 32 H 0.06 1.06 7.96 -2.39 -0.02 1.04 16 33 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.10 16 35 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.07 1.95 5.58 -2.39 -0.01 1.94 16 38 H 0.34 9.97 6.32 -89.69 -0.57 9.40 16 39 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 42 H 0.07 1.16 7.70 -2.39 -0.02 1.14 16 Total: -1.00 -68.01 327.39 -0.65 -68.67 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: -0.34 Total: 23.23 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: 3.48 Total: -19.01 kcal Atomic # 7 Polarization: -92.44 SS G_CDS: -5.79 Total: -98.23 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.04 Total: -20.24 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -68.01 -0.65 -68.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711237402.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.211 kcal (2) G-P(sol) polarization free energy of solvation -68.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds