Wall clock time and date at job start Mon Mar 30 2020 04:48:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31520 * 1
3 3 Si 1.86798 * 119.99784 * 2 1
4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1
5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1
6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1
7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3
8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1
9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1
10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2
11 11 C 1.53007 * 109.46873 * 179.97438 * 10 9 7
12 12 N 1.46505 * 109.46903 * 179.97438 * 11 10 9
13 13 C 1.34771 * 119.99643 * 180.02562 * 12 11 10
14 14 O 1.21278 * 120.00443 * 0.02562 * 13 12 11
15 15 C 1.50701 * 120.00074 * 180.02562 * 13 12 11
16 16 C 1.54113 * 111.68879 * 299.18370 * 15 13 12
17 17 C 1.54043 * 104.56180 * 261.13782 * 16 15 13
18 18 C 1.54821 * 103.11777 * 322.62058 * 17 16 15
19 19 C 1.54274 * 104.43003 * 37.16218 * 18 17 16
20 20 H 1.08999 * 111.35353 * 98.75647 * 19 18 17
21 21 N 1.47922 * 108.71691 * 222.45292 * 19 18 17
22 22 C 1.48477 * 105.99460 * 139.43252 * 21 19 18
23 23 C 1.54443 * 111.71640 * 62.55546 * 15 13 12
24 24 H 0.96998 * 120.00124 * 0.02562 * 1 2 3
25 25 H 1.09004 * 109.47017 * 299.99842 * 9 7 2
26 26 H 1.08997 * 109.47037 * 59.99777 * 9 7 2
27 27 H 1.09004 * 109.47139 * 299.99623 * 10 9 7
28 28 H 1.08997 * 109.47675 * 60.00023 * 10 9 7
29 29 H 1.08994 * 109.47272 * 300.00031 * 11 10 9
30 30 H 1.09003 * 109.46507 * 60.00134 * 11 10 9
31 31 H 0.96994 * 119.99944 * 0.02562 * 12 11 10
32 32 H 1.09006 * 110.49400 * 20.97145 * 16 15 13
33 33 H 1.08996 * 110.49629 * 143.63476 * 16 15 13
34 34 H 1.09003 * 111.12394 * 203.92652 * 17 16 15
35 35 H 1.08998 * 110.19399 * 80.87890 * 17 16 15
36 36 H 1.08999 * 110.44484 * 278.42744 * 18 17 16
37 37 H 1.09002 * 110.44502 * 155.89818 * 18 17 16
38 38 H 1.00898 * 110.99725 * 260.05937 * 21 19 18
39 39 H 1.08994 * 110.66629 * 79.22073 * 22 21 19
40 40 H 1.09001 * 110.66529 * 202.18632 * 22 21 19
41 41 H 1.08997 * 110.72712 * 217.34254 * 23 15 13
42 42 H 1.08999 * 110.72301 * 340.62054 * 23 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4967 2.0465 -1.4001
5 1 3.5467 1.4403 0.7001
6 1 1.4466 2.6527 0.7000
7 6 2.0046 -1.1941 0.0005
8 1 1.4646 -2.1293 0.0014
9 6 3.5116 -1.1940 0.0011
10 6 4.0216 -2.6365 0.0010
11 6 5.5517 -2.6364 0.0009
12 7 6.0400 -4.0177 0.0014
13 6 7.3650 -4.2639 0.0020
14 8 8.1532 -3.3421 0.0026
15 6 7.8674 -5.6847 0.0019
16 6 7.3984 -6.4547 1.2518
17 6 8.6030 -6.4070 2.2108
18 6 9.8158 -6.5469 1.2587
19 6 9.4128 -5.7471 0.0026
20 1 9.8511 -4.7491 0.0100
21 7 9.8113 -6.5150 -1.1972
22 6 8.6971 -6.3658 -2.1672
23 6 7.4351 -6.4437 -1.2718
24 1 -0.4850 0.8400 -0.0004
25 1 3.8753 -0.6803 -0.8889
26 1 3.8746 -0.6799 0.8911
27 1 3.6579 -3.1505 0.8908
28 1 3.6587 -3.1502 -0.8892
29 1 5.9150 -2.1226 -0.8890
30 1 5.9149 -2.1227 0.8910
31 1 5.4097 -4.7549 0.0014
32 1 6.5241 -5.9739 1.6905
33 1 7.1786 -7.4923 1.0006
34 1 8.5724 -7.2330 2.9213
35 1 8.6303 -5.4508 2.7333
36 1 9.9826 -7.5940 1.0059
37 1 10.7084 -6.1173 1.7135
38 1 10.6751 -6.1626 -1.5816
39 1 8.7523 -5.4008 -2.6710
40 1 8.7076 -7.1787 -2.8932
41 1 7.1908 -7.4801 -1.0390
42 1 6.5917 -5.9456 -1.7499
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000711237409.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:48:38
Heat of formation + Delta-G solvation = -80.385952 kcal
Electronic energy + Delta-G solvation = -20543.777063 eV
Core-core repulsion = 17521.306249 eV
Total energy + Delta-G solvation = -3022.470814 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-41.93464 -39.34167 -37.01570 -35.39553 -35.19463 -33.53247 -32.11436 -29.20102
-28.33912 -27.43518 -24.92848 -23.13003 -22.25965 -22.06019 -21.45084 -19.88945
-18.98964 -18.50765 -17.18032 -16.98417 -16.64881 -16.32447 -16.01338 -15.55355
-15.21610 -14.97050 -14.79475 -14.64208 -14.04542 -13.83447 -13.68577 -13.00796
-12.86332 -12.78467 -12.74177 -12.70091 -12.31493 -12.03614 -11.97009 -11.84830
-11.75420 -11.67182 -11.62720 -11.37167 -11.35228 -10.77896 -10.76206 -10.15714
-9.59249 -8.30923 -6.34828 1.35117 1.36989 1.48461 1.51898 2.09743
2.34660 3.04788 3.06546 3.42573 3.52434 3.68633 3.91638 4.06031
4.13599 4.15392 4.23520 4.33355 4.46074 4.47164 4.52033 4.63233
4.82332 4.83894 4.84999 4.86392 4.95073 4.96853 5.00358 5.02669
5.11438 5.15635 5.22161 5.34276 5.42571 5.46188 5.52616 5.63187
5.78521 6.25689 6.33052 6.49823 6.73245 7.15675 7.30095 8.85470
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.035315 B = 0.003518 C = 0.003505
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 792.664177 B = 7958.040423 C = 7987.536645
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.949 5.949
2 C 0.006 3.994
3 Si 0.946 3.054
4 H -0.267 1.267
5 H -0.249 1.249
6 H -0.284 1.284
7 C -0.531 4.531
8 H 0.039 0.961
9 C -0.012 4.012
10 C -0.099 4.099
11 C 0.127 3.873
12 N -0.712 5.712
13 C 0.524 3.476
14 O -0.587 6.587
15 C -0.091 4.091
16 C -0.105 4.105
17 C -0.126 4.126
18 C -0.103 4.103
19 C 0.074 3.926
20 H 0.050 0.950
21 N -0.659 5.659
22 C 0.034 3.966
23 C -0.107 4.107
24 H 0.266 0.734
25 H 0.018 0.982
26 H 0.020 0.980
27 H 0.065 0.935
28 H 0.065 0.935
29 H 0.056 0.944
30 H 0.055 0.945
31 H 0.414 0.586
32 H 0.071 0.929
33 H 0.102 0.898
34 H 0.092 0.908
35 H 0.049 0.951
36 H 0.089 0.911
37 H 0.063 0.937
38 H 0.342 0.658
39 H 0.026 0.974
40 H 0.103 0.897
41 H 0.109 0.891
42 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.749 -17.047 -0.097 26.089
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.590 5.590
2 C -0.191 4.191
3 Si 0.770 3.230
4 H -0.192 1.192
5 H -0.173 1.173
6 H -0.209 1.209
7 C -0.569 4.569
8 H 0.057 0.943
9 C -0.050 4.050
10 C -0.137 4.137
11 C 0.003 3.997
12 N -0.364 5.364
13 C 0.311 3.689
14 O -0.467 6.467
15 C -0.095 4.095
16 C -0.142 4.142
17 C -0.163 4.163
18 C -0.141 4.141
19 C -0.037 4.037
20 H 0.068 0.932
21 N -0.288 5.288
22 C -0.095 4.095
23 C -0.145 4.145
24 H 0.075 0.925
25 H 0.037 0.963
26 H 0.038 0.962
27 H 0.084 0.916
28 H 0.084 0.916
29 H 0.074 0.926
30 H 0.074 0.926
31 H 0.251 0.749
32 H 0.090 0.910
33 H 0.120 0.880
34 H 0.111 0.889
35 H 0.067 0.933
36 H 0.108 0.892
37 H 0.082 0.918
38 H 0.157 0.843
39 H 0.045 0.955
40 H 0.122 0.878
41 H 0.127 0.873
42 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 19.973 -16.945 0.144 26.193
hybrid contribution -0.403 1.957 -0.407 2.039
sum 19.570 -14.989 -0.263 24.652
Atomic orbital electron populations
1.70054 1.08178 1.28149 1.52636 1.25967 0.95576 1.03362 0.94219
0.85717 0.79483 0.78642 0.79180 1.19244 1.17303 1.20943 1.21454
0.91821 0.93303 1.50287 0.94297 1.19465 0.94162 0.94658 0.96723
1.21478 0.91796 0.98163 1.02289 1.21313 0.94560 0.82665 1.01194
1.45954 1.06959 1.09279 1.74159 1.20814 0.82096 0.91557 0.74450
1.90647 1.56407 1.47791 1.51858 1.22116 0.96835 0.90560 1.00014
1.22341 0.98340 1.00983 0.92561 1.22382 0.94197 1.02003 0.97751
1.22329 0.97668 1.01131 0.92961 1.22803 0.92068 0.95772 0.93060
0.93168 1.63285 1.05424 1.54660 1.05385 1.23121 0.90684 1.00444
0.95270 1.22711 0.97627 1.01708 0.92476 0.92473 0.96317 0.96190
0.91585 0.91583 0.92589 0.92611 0.74913 0.91049 0.87955 0.88944
0.93254 0.89233 0.91802 0.84252 0.95508 0.87833 0.87294 0.90525
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -59.13 13.96 21.45 0.30 -58.83 16
2 C 0.01 0.33 5.47 84.65 0.46 0.80 16
3 Si 0.95 44.34 27.47 68.60 1.88 46.22 16
4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16
5 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16
6 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16
7 C -0.53 -29.99 9.66 25.60 0.25 -29.74 16
8 H 0.04 2.38 7.99 -2.91 -0.02 2.36 16
9 C -0.01 -0.55 4.04 29.85 0.12 -0.43 16
10 C -0.10 -3.55 5.27 30.60 0.16 -3.39 16
11 C 0.13 4.03 5.67 86.38 0.49 4.52 16
12 N -0.71 -18.40 5.12 -463.05 -2.37 -20.77 16
13 C 0.52 14.50 6.49 87.66 0.57 15.07 16
14 O -0.59 -21.36 15.45 -3.02 -0.05 -21.41 16
15 C -0.09 -1.82 0.71 -51.49 -0.04 -1.86 16
16 C -0.10 -1.63 5.92 31.32 0.19 -1.45 16
17 C -0.13 -2.00 6.86 31.57 0.22 -1.78 16
18 C -0.10 -1.72 6.53 31.65 0.21 -1.51 16
19 C 0.07 1.52 3.73 45.72 0.17 1.69 16
20 H 0.05 1.35 6.71 -2.39 -0.02 1.34 16
21 N -0.66 -11.39 6.97 -476.94 -3.33 -14.72 16
22 C 0.03 0.56 7.55 86.66 0.65 1.21 16
23 C -0.11 -1.69 6.20 31.74 0.20 -1.49 16
24 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16
25 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16
26 H 0.02 0.90 7.20 -2.39 -0.02 0.89 16
27 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16
28 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16
29 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16
30 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16
31 H 0.41 8.36 8.36 -92.71 -0.78 7.59 16
32 H 0.07 1.15 7.57 -2.38 -0.02 1.13 16
33 H 0.10 1.17 7.28 -2.39 -0.02 1.15 16
34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16
35 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16
36 H 0.09 1.35 7.97 -2.39 -0.02 1.33 16
37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16
38 H 0.34 5.36 8.92 -89.70 -0.80 4.56 16
39 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16
40 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16
41 H 0.11 1.29 7.29 -2.39 -0.02 1.27 16
42 H 0.08 1.22 7.74 -2.39 -0.02 1.20 16
Total: -1.00 -69.88 330.03 -0.53 -70.42
By element:
Atomic # 1 Polarization: 18.07 SS G_CDS: -0.62 Total: 17.45 kcal
Atomic # 6 Polarization: -22.01 SS G_CDS: 3.65 Total: -18.37 kcal
Atomic # 7 Polarization: -88.92 SS G_CDS: -5.40 Total: -94.31 kcal
Atomic # 8 Polarization: -21.36 SS G_CDS: -0.05 Total: -21.41 kcal
Atomic # 14 Polarization: 44.34 SS G_CDS: 1.88 Total: 46.22 kcal
Total: -69.88 -0.53 -70.42 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000711237409.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.968 kcal
(2) G-P(sol) polarization free energy of solvation -69.884 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.852 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.534 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.418 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.386 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds