Wall clock time and date at job start Mon Mar 30 2020 04:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46873 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.46903 * 179.97438 * 11 10 9 13 13 C 1.34771 * 119.99643 * 180.02562 * 12 11 10 14 14 O 1.21278 * 120.00443 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.00074 * 180.02562 * 13 12 11 16 16 C 1.54113 * 111.68879 * 299.18370 * 15 13 12 17 17 C 1.54043 * 104.56180 * 261.13782 * 16 15 13 18 18 C 1.54821 * 103.11777 * 322.62058 * 17 16 15 19 19 C 1.54274 * 104.43003 * 37.16218 * 18 17 16 20 20 H 1.08999 * 111.35353 * 98.75647 * 19 18 17 21 21 N 1.47922 * 108.71691 * 222.45292 * 19 18 17 22 22 C 1.48477 * 105.99460 * 139.43252 * 21 19 18 23 23 C 1.54443 * 111.71640 * 62.55546 * 15 13 12 24 24 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 26 26 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 27 27 H 1.09004 * 109.47139 * 299.99623 * 10 9 7 28 28 H 1.08997 * 109.47675 * 60.00023 * 10 9 7 29 29 H 1.08994 * 109.47272 * 300.00031 * 11 10 9 30 30 H 1.09003 * 109.46507 * 60.00134 * 11 10 9 31 31 H 0.96994 * 119.99944 * 0.02562 * 12 11 10 32 32 H 1.09006 * 110.49400 * 20.97145 * 16 15 13 33 33 H 1.08996 * 110.49629 * 143.63476 * 16 15 13 34 34 H 1.09003 * 111.12394 * 203.92652 * 17 16 15 35 35 H 1.08998 * 110.19399 * 80.87890 * 17 16 15 36 36 H 1.08999 * 110.44484 * 278.42744 * 18 17 16 37 37 H 1.09002 * 110.44502 * 155.89818 * 18 17 16 38 38 H 1.00898 * 110.99725 * 260.05937 * 21 19 18 39 39 H 1.08994 * 110.66629 * 79.22073 * 22 21 19 40 40 H 1.09001 * 110.66529 * 202.18632 * 22 21 19 41 41 H 1.08997 * 110.72712 * 217.34254 * 23 15 13 42 42 H 1.08999 * 110.72301 * 340.62054 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0009 12 7 6.0400 -4.0177 0.0014 13 6 7.3650 -4.2639 0.0020 14 8 8.1532 -3.3421 0.0026 15 6 7.8674 -5.6847 0.0019 16 6 7.3984 -6.4547 1.2518 17 6 8.6030 -6.4070 2.2108 18 6 9.8158 -6.5469 1.2587 19 6 9.4128 -5.7471 0.0026 20 1 9.8511 -4.7491 0.0100 21 7 9.8113 -6.5150 -1.1972 22 6 8.6971 -6.3658 -2.1672 23 6 7.4351 -6.4437 -1.2718 24 1 -0.4850 0.8400 -0.0004 25 1 3.8753 -0.6803 -0.8889 26 1 3.8746 -0.6799 0.8911 27 1 3.6579 -3.1505 0.8908 28 1 3.6587 -3.1502 -0.8892 29 1 5.9150 -2.1226 -0.8890 30 1 5.9149 -2.1227 0.8910 31 1 5.4097 -4.7549 0.0014 32 1 6.5241 -5.9739 1.6905 33 1 7.1786 -7.4923 1.0006 34 1 8.5724 -7.2330 2.9213 35 1 8.6303 -5.4508 2.7333 36 1 9.9826 -7.5940 1.0059 37 1 10.7084 -6.1173 1.7135 38 1 10.6751 -6.1626 -1.5816 39 1 8.7523 -5.4008 -2.6710 40 1 8.7076 -7.1787 -2.8932 41 1 7.1908 -7.4801 -1.0390 42 1 6.5917 -5.9456 -1.7499 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711237409.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:38 Heat of formation + Delta-G solvation = -80.385952 kcal Electronic energy + Delta-G solvation = -20543.777063 eV Core-core repulsion = 17521.306249 eV Total energy + Delta-G solvation = -3022.470814 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.93464 -39.34167 -37.01570 -35.39553 -35.19463 -33.53247 -32.11436 -29.20102 -28.33912 -27.43518 -24.92848 -23.13003 -22.25965 -22.06019 -21.45084 -19.88945 -18.98964 -18.50765 -17.18032 -16.98417 -16.64881 -16.32447 -16.01338 -15.55355 -15.21610 -14.97050 -14.79475 -14.64208 -14.04542 -13.83447 -13.68577 -13.00796 -12.86332 -12.78467 -12.74177 -12.70091 -12.31493 -12.03614 -11.97009 -11.84830 -11.75420 -11.67182 -11.62720 -11.37167 -11.35228 -10.77896 -10.76206 -10.15714 -9.59249 -8.30923 -6.34828 1.35117 1.36989 1.48461 1.51898 2.09743 2.34660 3.04788 3.06546 3.42573 3.52434 3.68633 3.91638 4.06031 4.13599 4.15392 4.23520 4.33355 4.46074 4.47164 4.52033 4.63233 4.82332 4.83894 4.84999 4.86392 4.95073 4.96853 5.00358 5.02669 5.11438 5.15635 5.22161 5.34276 5.42571 5.46188 5.52616 5.63187 5.78521 6.25689 6.33052 6.49823 6.73245 7.15675 7.30095 8.85470 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.035315 B = 0.003518 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.664177 B = 7958.040423 C = 7987.536645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.946 3.054 4 H -0.267 1.267 5 H -0.249 1.249 6 H -0.284 1.284 7 C -0.531 4.531 8 H 0.039 0.961 9 C -0.012 4.012 10 C -0.099 4.099 11 C 0.127 3.873 12 N -0.712 5.712 13 C 0.524 3.476 14 O -0.587 6.587 15 C -0.091 4.091 16 C -0.105 4.105 17 C -0.126 4.126 18 C -0.103 4.103 19 C 0.074 3.926 20 H 0.050 0.950 21 N -0.659 5.659 22 C 0.034 3.966 23 C -0.107 4.107 24 H 0.266 0.734 25 H 0.018 0.982 26 H 0.020 0.980 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.414 0.586 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.342 0.658 39 H 0.026 0.974 40 H 0.103 0.897 41 H 0.109 0.891 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.749 -17.047 -0.097 26.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.173 1.173 6 H -0.209 1.209 7 C -0.569 4.569 8 H 0.057 0.943 9 C -0.050 4.050 10 C -0.137 4.137 11 C 0.003 3.997 12 N -0.364 5.364 13 C 0.311 3.689 14 O -0.467 6.467 15 C -0.095 4.095 16 C -0.142 4.142 17 C -0.163 4.163 18 C -0.141 4.141 19 C -0.037 4.037 20 H 0.068 0.932 21 N -0.288 5.288 22 C -0.095 4.095 23 C -0.145 4.145 24 H 0.075 0.925 25 H 0.037 0.963 26 H 0.038 0.962 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.251 0.749 32 H 0.090 0.910 33 H 0.120 0.880 34 H 0.111 0.889 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.157 0.843 39 H 0.045 0.955 40 H 0.122 0.878 41 H 0.127 0.873 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 19.973 -16.945 0.144 26.193 hybrid contribution -0.403 1.957 -0.407 2.039 sum 19.570 -14.989 -0.263 24.652 Atomic orbital electron populations 1.70054 1.08178 1.28149 1.52636 1.25967 0.95576 1.03362 0.94219 0.85717 0.79483 0.78642 0.79180 1.19244 1.17303 1.20943 1.21454 0.91821 0.93303 1.50287 0.94297 1.19465 0.94162 0.94658 0.96723 1.21478 0.91796 0.98163 1.02289 1.21313 0.94560 0.82665 1.01194 1.45954 1.06959 1.09279 1.74159 1.20814 0.82096 0.91557 0.74450 1.90647 1.56407 1.47791 1.51858 1.22116 0.96835 0.90560 1.00014 1.22341 0.98340 1.00983 0.92561 1.22382 0.94197 1.02003 0.97751 1.22329 0.97668 1.01131 0.92961 1.22803 0.92068 0.95772 0.93060 0.93168 1.63285 1.05424 1.54660 1.05385 1.23121 0.90684 1.00444 0.95270 1.22711 0.97627 1.01708 0.92476 0.92473 0.96317 0.96190 0.91585 0.91583 0.92589 0.92611 0.74913 0.91049 0.87955 0.88944 0.93254 0.89233 0.91802 0.84252 0.95508 0.87833 0.87294 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.13 13.96 21.45 0.30 -58.83 16 2 C 0.01 0.33 5.47 84.65 0.46 0.80 16 3 Si 0.95 44.34 27.47 68.60 1.88 46.22 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 6 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 7 C -0.53 -29.99 9.66 25.60 0.25 -29.74 16 8 H 0.04 2.38 7.99 -2.91 -0.02 2.36 16 9 C -0.01 -0.55 4.04 29.85 0.12 -0.43 16 10 C -0.10 -3.55 5.27 30.60 0.16 -3.39 16 11 C 0.13 4.03 5.67 86.38 0.49 4.52 16 12 N -0.71 -18.40 5.12 -463.05 -2.37 -20.77 16 13 C 0.52 14.50 6.49 87.66 0.57 15.07 16 14 O -0.59 -21.36 15.45 -3.02 -0.05 -21.41 16 15 C -0.09 -1.82 0.71 -51.49 -0.04 -1.86 16 16 C -0.10 -1.63 5.92 31.32 0.19 -1.45 16 17 C -0.13 -2.00 6.86 31.57 0.22 -1.78 16 18 C -0.10 -1.72 6.53 31.65 0.21 -1.51 16 19 C 0.07 1.52 3.73 45.72 0.17 1.69 16 20 H 0.05 1.35 6.71 -2.39 -0.02 1.34 16 21 N -0.66 -11.39 6.97 -476.94 -3.33 -14.72 16 22 C 0.03 0.56 7.55 86.66 0.65 1.21 16 23 C -0.11 -1.69 6.20 31.74 0.20 -1.49 16 24 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 25 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 26 H 0.02 0.90 7.20 -2.39 -0.02 0.89 16 27 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.41 8.36 8.36 -92.71 -0.78 7.59 16 32 H 0.07 1.15 7.57 -2.38 -0.02 1.13 16 33 H 0.10 1.17 7.28 -2.39 -0.02 1.15 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.09 1.35 7.97 -2.39 -0.02 1.33 16 37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.34 5.36 8.92 -89.70 -0.80 4.56 16 39 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.11 1.29 7.29 -2.39 -0.02 1.27 16 42 H 0.08 1.22 7.74 -2.39 -0.02 1.20 16 Total: -1.00 -69.88 330.03 -0.53 -70.42 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -0.62 Total: 17.45 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: 3.65 Total: -18.37 kcal Atomic # 7 Polarization: -88.92 SS G_CDS: -5.40 Total: -94.31 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.05 Total: -21.41 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.88 Total: 46.22 kcal Total: -69.88 -0.53 -70.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711237409.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.968 kcal (2) G-P(sol) polarization free energy of solvation -69.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds