Wall clock time and date at job start Mon Mar 30 2020 05:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.23292 * 2 1 4 4 C 1.53138 * 109.23337 * 119.42228 * 2 1 3 5 5 C 1.51490 * 108.38265 * 36.16865 * 4 2 1 6 6 O 1.21281 * 120.05264 * 250.03860 * 5 4 2 7 7 N 1.33630 * 119.90132 * 70.01201 * 5 4 2 8 8 C 1.46497 * 119.95225 * 180.25079 * 7 5 4 9 9 C 1.52999 * 109.46911 * 272.97453 * 8 7 5 10 10 C 1.50697 * 115.54642 * 91.01213 * 9 8 7 11 11 H 1.08011 * 119.99536 * 219.61579 * 10 9 8 12 12 C 1.37873 * 120.00515 * 39.61594 * 10 9 8 13 13 N 1.31517 * 119.99931 * 17.41220 * 12 10 9 14 14 Si 1.86803 * 120.00170 * 197.41374 * 12 10 9 15 15 H 1.48508 * 109.47085 * 94.99443 * 14 12 10 16 16 H 1.48498 * 109.47513 * 214.99361 * 14 12 10 17 17 H 1.48499 * 109.47210 * 334.99874 * 14 12 10 18 18 C 1.52998 * 117.50077 * 305.33485 * 9 8 7 19 19 C 1.53002 * 60.03270 * 252.50140 * 18 9 8 20 20 C 1.47265 * 120.09504 * 0.52507 * 7 5 4 21 21 C 1.53607 * 108.26800 * 289.07679 * 20 7 5 22 22 N 1.45558 * 110.78237 * 85.87756 * 21 20 7 23 23 H 1.08999 * 109.46677 * 298.28717 * 1 2 3 24 24 H 1.08999 * 109.46581 * 58.27901 * 1 2 3 25 25 H 1.08992 * 109.47372 * 178.28161 * 1 2 3 26 26 H 1.09001 * 109.47114 * 179.42251 * 3 2 1 27 27 H 1.09001 * 109.46590 * 299.42069 * 3 2 1 28 28 H 1.08998 * 109.47528 * 59.41859 * 3 2 1 29 29 H 1.09003 * 109.68096 * 276.45073 * 4 2 1 30 30 H 1.09004 * 109.68929 * 155.89498 * 4 2 1 31 31 H 1.09003 * 109.46884 * 152.97512 * 8 7 5 32 32 H 1.09000 * 109.47162 * 32.98035 * 8 7 5 33 33 H 0.97001 * 119.99607 * 184.95994 * 13 12 10 34 34 H 1.09002 * 117.49736 * 0.02562 * 18 9 8 35 35 H 1.08998 * 117.49495 * 144.99556 * 18 9 8 36 36 H 1.08994 * 117.49733 * 107.50316 * 19 18 9 37 37 H 1.08998 * 117.49396 * 252.52299 * 19 18 9 38 38 H 1.08999 * 109.62189 * 48.77226 * 20 7 5 39 39 H 1.09000 * 109.61675 * 169.33101 * 20 7 5 40 40 H 1.08991 * 109.30245 * 325.50424 * 21 20 7 41 41 H 1.09002 * 109.13247 * 206.14168 * 21 20 7 42 42 H 1.00900 * 111.00327 * 163.54006 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0340 1.4446 0.0000 4 6 2.0345 -0.7103 1.2594 5 6 1.0961 -1.8587 1.5685 6 8 0.3682 -1.8044 2.5371 7 7 1.0711 -2.9314 0.7721 8 6 0.1601 -4.0402 1.0669 9 6 0.8364 -5.0119 2.0360 10 6 0.5970 -4.7423 3.4993 11 1 1.4016 -4.8643 4.2095 12 6 -0.6489 -4.3399 3.9314 13 7 -1.7003 -4.5151 3.1610 14 14 -0.8435 -3.5459 5.6110 15 1 -0.8069 -2.0683 5.4673 16 1 -2.1427 -3.9535 6.2038 17 1 0.2643 -3.9846 6.4973 18 6 2.2019 -5.5737 1.6353 19 6 0.9646 -6.4730 1.5979 20 6 1.9623 -3.0032 -0.3981 21 6 1.4611 -1.9995 -1.4473 22 7 2.0096 -0.6745 -1.1978 23 1 -0.3633 0.4870 0.9050 24 1 -0.3632 0.5403 -0.8742 25 1 -0.3634 -1.0271 -0.0308 26 1 3.1240 1.4492 0.0104 27 1 1.6770 1.9539 -0.8952 28 1 1.6601 1.9599 0.8847 29 1 2.0465 -0.0109 2.0954 30 1 3.0400 -1.0941 1.0867 31 1 -0.0877 -4.5623 0.1426 32 1 -0.7516 -3.6507 1.5198 33 1 -2.5642 -4.1679 3.4332 34 1 2.6187 -5.2507 0.6813 35 1 2.9271 -5.7482 2.4300 36 1 0.5673 -6.7419 0.6192 37 1 0.8758 -7.2389 2.3683 38 1 2.9791 -2.7476 -0.1001 39 1 1.9418 -4.0112 -0.8124 40 1 0.3731 -1.9503 -1.4080 41 1 1.7693 -2.3343 -2.4378 42 1 1.9109 -0.0835 -2.0097 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711675729.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:23 Heat of formation + Delta-G solvation = 5.015171 kcal Electronic energy + Delta-G solvation = -22373.778617 eV Core-core repulsion = 19355.011073 eV Total energy + Delta-G solvation = -3018.767543 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.15297 -37.33065 -36.33877 -34.38096 -31.98117 -31.88844 -28.72415 -27.36242 -27.28164 -25.57206 -24.70633 -22.69300 -21.08942 -19.58519 -19.14289 -17.89197 -16.39390 -16.25330 -16.01202 -15.32562 -14.72070 -14.60338 -14.34893 -13.80608 -13.33036 -13.15022 -13.02904 -12.62717 -12.26448 -12.00004 -11.93463 -11.65141 -11.46894 -11.41302 -11.21500 -11.03214 -10.94799 -10.71727 -10.66029 -10.46251 -10.24937 -10.06757 -9.57906 -8.95679 -8.70248 -8.49440 -8.32831 -7.86814 -7.61638 -5.93992 -3.86343 3.47018 3.54919 3.62111 3.63221 3.89079 4.08384 4.63652 4.80500 4.94584 5.14563 5.18350 5.26914 5.33284 5.50319 5.61317 5.63271 5.70143 5.72046 5.83934 5.86607 5.94609 6.02141 6.07726 6.12853 6.20532 6.29531 6.40181 6.46152 6.53752 6.69856 6.71748 7.00083 7.22779 7.25452 7.36832 7.43046 7.65397 7.71845 8.06585 8.38187 8.60341 9.04950 9.25697 9.74722 11.14575 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020668 B = 0.008288 C = 0.006657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.405674 B = 3377.423789 C = 4204.867087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.132 3.868 3 C -0.139 4.139 4 C -0.130 4.130 5 C 0.510 3.490 6 O -0.513 6.513 7 N -0.601 5.601 8 C 0.144 3.856 9 C 0.048 3.952 10 C -0.481 4.481 11 H 0.052 0.948 12 C 0.096 3.904 13 N -0.876 5.876 14 Si 0.884 3.116 15 H -0.273 1.273 16 H -0.293 1.293 17 H -0.279 1.279 18 C -0.208 4.208 19 C -0.202 4.202 20 C 0.113 3.887 21 C 0.048 3.952 22 N -0.700 5.700 23 H 0.064 0.936 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.038 0.962 32 H 0.125 0.875 33 H 0.258 0.742 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.041 0.959 41 H 0.077 0.923 42 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.446 8.534 -11.305 15.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.041 3.959 3 C -0.197 4.197 4 C -0.171 4.171 5 C 0.296 3.704 6 O -0.388 6.388 7 N -0.334 5.334 8 C 0.023 3.977 9 C 0.047 3.953 10 C -0.517 4.517 11 H 0.070 0.930 12 C -0.106 4.106 13 N -0.513 5.513 14 Si 0.712 3.288 15 H -0.198 1.198 16 H -0.220 1.220 17 H -0.205 1.205 18 C -0.245 4.245 19 C -0.241 4.241 20 C -0.012 4.012 21 C -0.082 4.082 22 N -0.334 5.334 23 H 0.083 0.917 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.057 0.943 32 H 0.143 0.857 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.059 0.941 41 H 0.096 0.904 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 6.303 8.272 -10.409 14.714 hybrid contribution -0.789 0.511 0.380 1.014 sum 5.514 8.783 -10.029 14.426 Atomic orbital electron populations 1.22666 0.96840 1.03173 1.01992 1.20379 0.92541 0.93343 0.89665 1.21892 1.01833 0.94072 1.01880 1.22182 1.00135 0.97040 0.97748 1.20121 0.84252 0.83224 0.82822 1.90786 1.41631 1.79682 1.26687 1.47979 1.40188 1.18903 1.26362 1.21381 0.94422 0.86362 0.95523 1.19317 0.91578 0.89149 0.95272 1.20323 0.95425 1.46071 0.89905 0.92953 1.24633 0.95093 0.93831 0.97091 1.69942 0.99301 1.43107 1.38944 0.86723 0.76616 0.81160 0.84306 1.19814 1.22006 1.20450 1.22802 0.92502 1.08887 1.00320 1.23015 1.02887 0.98116 1.00036 1.21916 0.94400 0.98588 0.86273 1.22225 0.98122 0.88949 0.98941 1.58098 1.65284 1.04387 1.05590 0.91655 0.93188 0.91225 0.91677 0.92776 0.91777 0.89019 0.89168 0.94314 0.85741 0.93200 0.91648 0.91121 0.92019 0.90558 0.90690 0.89960 0.94053 0.90443 0.83716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.72 7.26 37.16 0.27 -2.45 16 2 C 0.13 1.69 0.96 -132.24 -0.13 1.56 16 3 C -0.14 -1.41 8.42 37.16 0.31 -1.10 16 4 C -0.13 -2.06 4.86 -27.42 -0.13 -2.20 16 5 C 0.51 10.60 4.83 -11.11 -0.05 10.54 16 6 O -0.51 -13.28 15.43 5.56 0.09 -13.19 16 7 N -0.60 -11.75 2.00 -172.69 -0.35 -12.10 16 8 C 0.14 3.35 5.09 -4.04 -0.02 3.33 16 9 C 0.05 1.21 1.94 -155.62 -0.30 0.90 16 10 C -0.48 -13.77 8.44 -34.44 -0.29 -14.07 16 11 H 0.05 1.54 7.88 -52.48 -0.41 1.13 16 12 C 0.10 2.78 4.31 -17.82 -0.08 2.70 16 13 N -0.88 -25.48 11.24 55.43 0.62 -24.85 16 14 Si 0.88 23.27 29.58 -169.99 -5.03 18.24 16 15 H -0.27 -7.39 7.11 56.52 0.40 -6.99 16 16 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 17 H -0.28 -7.26 7.11 56.52 0.40 -6.85 16 18 C -0.21 -4.52 9.62 -26.73 -0.26 -4.78 16 19 C -0.20 -4.64 9.89 -26.69 -0.26 -4.91 16 20 C 0.11 1.67 4.95 -3.31 -0.02 1.66 16 21 C 0.05 0.58 6.05 -4.23 -0.03 0.56 16 22 N -0.70 -7.94 5.89 -101.36 -0.60 -8.54 16 23 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 1.20 4.90 -51.93 -0.25 0.95 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.47 8.11 -51.93 -0.42 0.05 16 28 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 29 H 0.09 1.43 7.90 -51.93 -0.41 1.02 16 30 H 0.09 1.35 7.06 -51.93 -0.37 0.99 16 31 H 0.04 0.83 7.71 -51.93 -0.40 0.43 16 32 H 0.13 3.39 4.86 -51.93 -0.25 3.14 16 33 H 0.26 7.29 8.32 -40.82 -0.34 6.95 16 34 H 0.07 1.25 6.23 -51.93 -0.32 0.93 16 35 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 36 H 0.06 1.30 8.03 -51.93 -0.42 0.89 16 37 H 0.08 1.82 8.14 -51.93 -0.42 1.39 16 38 H 0.07 1.09 7.01 -51.93 -0.36 0.73 16 39 H 0.08 1.16 6.98 -51.93 -0.36 0.80 16 40 H 0.04 0.58 6.05 -51.93 -0.31 0.26 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.34 3.19 8.57 -39.29 -0.34 2.85 16 LS Contribution 318.65 15.07 4.80 4.80 Total: -1.00 -31.50 318.65 -8.17 -39.68 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -6.73 Total: 4.20 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -0.98 Total: -8.24 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: -0.32 Total: -45.49 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.09 Total: -13.19 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.03 Total: 18.24 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.50 -8.17 -39.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711675729.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.692 kcal (2) G-P(sol) polarization free energy of solvation -31.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds